Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->YAB1     --------->YAB1 --------DOF2              --------->AHL20(2) ----------->GT1 -->RVE1(1)             --------->YAB1    --------->AHL20(2) ->ARR11(3)        <---------TOE2(3)      <---------AHL20(2)                                  <------ --ARR11(3)   --------->AHL20(2)      ----------->TBP            ----------->HVH21      ---------->DOF2 ->GLK1(2)    <---------AHL20(2)     --------->AHL20(2)        --------->ANAC55(2)  --------->ZAT6 -GLK1(2)  <---------GLK1(2)    ------------>CBF  ------------>CBF               ----------->HVH21   ctttcaaatatcagaattttttagattaataaaaaacaatataaaaaaatgtgacaataccattcacttgacaacaccattcactgacactaaagacttt  15345400                                                                                <----------DOF2                    <-------TEIL                          ---------->DOF2   <---------GLK1(1)       <------ZmHOX2a(1)                        --------->TOE2(3)           --------->GLK1(1)      --     <---------TOE2(3)    <---------YAB1      <---------ARR11(3)           <---------ARR11(3)    ---- ----DOF2       <---------------AtSPL8        --------->ARR11(3)     --------->MYB52(1)          <---   tgaagtttaggaatagagggagtacattttgatagaaaacaaaactaaaatctaaatcacaaaagatagcctaacgagatttcttttttttttttttgtg  15345500                                                                                        <----------DOF2           <---------ANAC46                                                            <---------ANAC58           <---------ANAC58                                                            <---------ANAC58           <---------ANAC58                                                        <---------WOX13(1)   <---------CCA1(2)                                                       <----------DOF2 ---->ZmHOX2a(2)                            <---------MYB46(3)            <---------ANAC58  <-------- ----->ARR11(3)                          <----------DOF2       <---------ANAC46 <---------YAB1      < ------ARR11(3)---------->ID1       <---------At4g35610  <---------YAB1   <---------ANAC58  ---------   atcttgtatattggcttgttgtttaagcctgtaagtttggctgctttggttagagcatcatggttgtgtttttgatgcttttgtaattggctttctgaaa  15345600                                                                            --------->O2                                                                            <---------TGA1a                                                                     <----------ID1                                                                     ----------->GT1                                                                   --------->DAG2     <---------TOE1(3)                          ---------->DOF2                         ====================bZIP_DOF          --------->CCA1(2)                                       ---------->DOF2     <---------TOE2(3)         <---------ARR11(3) ----------->GT1                  ----------->GT1<---------ANAC55(2) -HSFB2a(2)           <---------ETT(2)                      --------->ANAC58<---------O2 <--------P ----------DOF2       --------->ETT(2)                      --------->ANAC58--------->TGA1a--------->MYB52(2) >HSFB2a(2)    --------->YAB1        --------->MYB52(1)----------->HVH21    ======================MYC_MYB   ctctttatctagatatatcatcagtcgacaaagaaaaaaaaacgattcagtttcagtgtgacaaggaaaaaaggagaaacgtgagtttaaggttagtttg  15345700                                                                                               ------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                           ------>NtERF2                                                                                        <---------ATERF1(1)                                                                                        <---------RAP2.3(1)                                                                                        ------>NtERF2                                                                                        <xxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       --------->ANAC46                                                                                     ------->GAMYB                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   ----------->RAV1(2)                                                                                   <---------At4g35610                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   --------->At4g35610                        <xxxxxxxxxxxxxxxsmallRNA(le3)------------>CBF              <---------ZAT2                   <xxxxxxxxxxxxxxxsmallRNA(le3)     *TSS                          --------->ZAT2  <-                   <xxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58               <xxxxxxxxxxxxxxxxx                   --------->ALFIN1         <-----------RAV1(2)                    <xxxxxxxxxxxxxxxxx                  <xxxxxxxxxxxxxxxsmallRNA(le3)     --------->ANAC58           <xxxxxxxxxxxxxxxxxxxxx                  <xxxxxxxxxxxxxxxsmallRNA(si3)  <------ZmHOX2a(2)            --------->ANAC58 ------                  <xxxxxxxxxxxxxxxxsmallRNA(le3)<---------ARR11(3)            --------->ANAC58-------                 <---------ANAC58         --------->AtMYB61               --------->ANAC58--------->DEAR3(1)                 <---------ANAC58     <---------ETT(2)                    --------->ANAC58--------->RAP2.3(3)            --------->CCA1(2)        <xxxxxxxxxxxxxxxsmallRNA(le3)        --------->ANAC46<---------ALFIN1           --------->ARR11(3)        <xxxxxxxxxxxxxxxsmallRNA(si3)     ------>MYB46(1)--------->ZAT18           --------->AHL20(1)       <xxxxxxxxxxxxxxxxsmallRNA(se3)     ------>MYB83<xxxxxxxxxxxxxxxxx          --------->AHL20(2)        <xxxxxxxxxxxxxxxxsmallRNA(le3)     -------->P --------->MYB52(1)        --------->AHL20(2)  <xxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ATERF1(1)  <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(s)<------ZmHOX2a(1)     --------->TOE1(2)<xxxxxxxxxxxxxx <----------ID1  <---------ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->AtMYB61<xxxxxxxxxxxxxx   aagaggacaaaaatatatggggtgagagaggctcgaactctcgacctcaggatcactcaatagctatgagacctacgcgctagccaactgcgccaccacc  15345800 >MYB46(1) --ALFIN1 ->DEAR3(1) ->AtMYB61 >MYB46(3) xxxsmallRNA(le3) xxsmallRNA(fl3) xxsmallRNA(se3) xxsmallRNA(le3) xxsmallRNA(se3) xsmallRNA(le3) xxsmallRNA(fl3) xxsmallRNA(si3) xxsmallRNA(se3) xsmallRNA(si3) ---------DOF2 xxsmallRNA(si3)                                                                               ------ xxsmallRNA(le3)                                                                             <------- xxsmallRNA(se3)                                                                           --------->AtMYB61 >MYB83  <-----------GT1         <------------CBF                                         --------->MYB46(3) -->ABI4(1)                    <---------AHL20(2)                                       --------->ANAC46 xxsmallRNA(fl3)               <---------YAB1 <----------DOF2                      ---------->ID1 xxsmallRNA(i)                 --------->AHL20(2)     <---------MYB52(1)       <---------MYB52(1) xxsmallRNA(s)        <---------ETT(2)     ---------->ID1                    <---------MYB46(3)------   cctttgctgtgttacctctctctgtcaacatatataattgtttttgttctttctctgttaagttgaactcgtttatgggtcgtttggcccaaaccacaca  15345900                              --------->YAB1                              --------->TOE2(3)      <---------YAB1          --------->TOE1(3)                          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->bZIP60(2)         <---------TOE2(3)                                <-----------HVH21 --ALFIN1         <---------MYB46(3)                          <---------AHL20(2)                   -- --->ANAC46<-----------GT1  --------->GLK1(2)                 --------->AHL20(2)         --------->AHL20(2)   tcacagttttgattcaccagttgttgagataatcttaaaacttaagaatgagttttctcagaaatttatcaaaccgtcatacaatgctccataaatttca  15346000                                                    <---------WOX13(1)        <-----------GT1                           --------->ATHB12     --------->AHL20(1)                          <---------YAB1    --------->AHL20(2)     --------->ARR11(3)                <---------TOE2(3)       ----------->GT1     <---------ARR11(3)               <-----------GT1     <-----------RAV1(2)               <--------    --------->AHL20(2)          ------->MYC3 <---------ANAC55(2)   <---------AHL20(2) <---------ARR14(2) ------->YAB1  --------->YAB1   <-------MYC3 <---------YAB1 ----------->GT1           --------->ARR14(2)   gtcaaaatatatacctattgtaatcgccagtacatgtgtttaacattatgtatgattgaaacaggtgattaaaatggttttcaatggagaaacgctttga  15346100                                                                                                  <--                                                                                                  <--                                                                                                  <--                      --------->YAB1                             <---------YAB1           ------->TEIL                      --------->AHL20(2)                       <---------ICU4          <---------ANAC58                --------->ANAC58                               --------->YAB1---------->DOF2   <-----                --------->ANAC58                              <---------ATHB12         <---------ANAC58              --------->CCA1(2)                         --------->YAB1  --------->ANAC58<---------ZAT18 --DOF2  ---------->DOF2                            ---------->DOF2     --------->ANAC58--------->ZAT14   tcaaaaactgagaaagataagcaataaaaattgagtttaaaatggtcttcaactaaaagcataaatcatgaaacaagcccaaagcgattgtgtacccatg  15346200                                                --------->LBD16                      <----------DOF2                                        <---------AHL20(2)                        --------->ARR11(3)             <---------At4g35610       --------->AHL20(2)                         <---------ARR11(3)             --------->ZAT2    <------------MYB.PH3(2)                        ----------->HVH21 -------ANAC46                 <---------MYB52(2)<------NtERF2              ----------->GT1 -------ANAC58                 <---------MYB59<---------LBD16              --------->DAG2     <------ -------ANAC58          ------->TEIL<----------DOF2          <----------ID1<XXXXXXXXXXXXXXXXXXXXMIR1886.3 ----CCA1(2) --------->At4g35610    <---------DAG2      ---------->DOF2  ---------->DOF2--------->ATHB12   tcttggaacaaaaacagctgaatatgaactcgaactaactttttaatagccggagaagaaaagagaacaaaactagaaaggtgacatctttgatttgatt  15346300  Previous    Next  AGI:  At4g31695.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 15345718    to: 15345753    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g31700.1    Description:  RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome. Identical to 40S ribosomal protein S6-1 (RPS6A) [Arabidopsis Thaliana] (GB:O48549;GB:O81777); similar to EMB3010 (EMBRYO DEFECTIVE 3010), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G10360.1); similar to 117M18_18 [Brassica rapa] (GB:AAZ66937.1); similar to ribosomal protein S6-like protein [Solanum tuberosum] (GB:ABA40470.1); contains InterPro domain Ribosomal protein S6, eukaryotic; (InterPro:IPR014401); contains InterPro domain Ribosomal protein S6e; (InterPro:IPR001377) Range:  from: 15346078    to: 15347733    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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