Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <------------------------ANAC81                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     --                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    --         <---------ANAC58  <------------------------ANAC81                                         --   <-----------RAV1(1)    <---------AHL20(2)                                                       --   --------->ALFIN1      <---------AHL20(1)                                                        -- <---------ANAC46 --------->ZAT6<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->ATHB12       -- <---------bZIP60(2)     --------->AHL20(2)                    <----------DOF2       <---------At4g35610 --->ALFIN1     ----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2)     <<<<<<< >DOF2   <---------ANAC58<---------AHL20(2)              <----------DOF2   <---------AHL20(2) <------   gtgatgtgttgtcgtctccaacactaattttttttttttttttttttttttttttttgtctttgtctttgtttttaattcattgtttagcttatattaac  15306300   --------->MYB52(1) ------->ANAC58 ------->AtLEC2 ------->ANAC58 ------->ANAC46                              <---------ANAC46 ---->MYB83           <---------YAB1--------->YAB1                       ----------->GT1 ---->MYB46(1)        <---------AHL20(2)     <---------ANAC58          ---------->DOF2           ---- <<GT-1              --------->AHL20(2)      <---------ANAC58      ---------->DOF2    --------->ZAT2 -----GT1<---------MYB46(3)   ------>ZmHOX2a(2)                 --------->YAB1        --------->At4g35610   caagcaaactgtggtttcagcatttttattgatccgaatcacaaactgcttgggttttcaaacgaataagaaagaaagtttatttagtagctgtggaatg  15306400                                                                                          -----------                                             ---------->ID1                               <---------ANAC58                                         <----------DOF2                                  <---------ANAC55(2)                                       ---------->ID1                                     <---------ANAC46                                      <-----------GT1                                     <---------ANAC55(1)                                     <<<<<<<<<<GT-3b                                      --------->ANAC55(2)                                   <---------YAB1               <---------ICU4            <---------ANAC58                                  <---------AHL20(2)           <---------YAB1            <-------TEIL         <-----------GT1          <---------AHL20(1)           --------->ICU4    --------->ANAC58 <-- ----------->GT1                <---------YAB1               <---------ICU4      --------->ANAC58 --- ------>DOF2               <---------ARR11(3)<-----------GT1 --------->YAB1    ---------->DOF2   ----   aaagtgtgatttaactagagagacttgaagttctattatttttctttttccctattctgctattcattattttcagaaatacaaagcaaaatacgtgaaa  15306500                                                               <------------CBF                                                 ----------->RAV1(1)                                                --------->At1g77200                                                --------->ANAC46                                                --------->DEAR3(1)                                                --------->DREB2C(2)                                           --------->ARR11(3) --------->ATHB12                                          <---------ICU4     <---------YAB1                                      <---------AHL20(2)     <---------AHL20(2) >GT1    --------->ANAC55(2)          --------->AHL20(2) --------->YAB1                     --------- -------ICU4                  ----------->GT1   --------->DEAR4(1)                --------->DAG2 ------>YAB1           <---------------AGL15    <---------ETT(1)      ---------->DOF2    <----------DOF2 ----->ICU4     <-----------GT1   --------->AHL20(2) <---------MYB52(2)         ---------->DOF2  ----   tgatcacatttaagtatttaacaaactatacagagaaaaaataaatatcaccgacactaacatattattgaaaaaaggcatgaaaaggctacttttaagc  15306600                                                                                             --------                                                                                             --------  <---------AHL20(2)       --------------->AGL15                                          --------->GLK1(1) ----------->TBP           <---------------AGL15                                     <-------TEIL --------->AHL20(2)        ========================================================================== <---------ATHB12       <-----------GT1  <---------ZAT18                           <---------GLK1(2) ->DOF2         ----------->GT1       <---------DOF5.7(2)                          <---------ARR14(2) -------->CBF <------------CBF        ---------->DOF2       *TSS                   --------->ARR14(2)   ccaataaataggcccaaattgtatatttactaaattttgttaacgcgcttacaaaaccctttggaaagtatttcatcaaatttcagattcagaaacccta  15306700                                                                                  ------->GAMYB                                                                                --------->ANAC58                                                                         <------MYB46(1)                                                                         <------MYB83                                                                        --------->MYB59                                                                        <---------AtMYB61                                                                        --------->MYB46(2)                                                                        --------->MYB111(2)                                                         <-----------ARR10  --------->RAP2.6(2)         --------->ANAC58                               --------->At4g35610 --------->ANAC58         --------->ANAC58            <-----------GT1    <---------At4g35610 --------->ANAC58       ---------->DOF2   --------->ANAC58          <----------DOF2      --------->MYB111(1)  <---------------AGL15  --------->ANAC58         <---------ANAC58     <--------P--------->MYB46(3) ->TOE1(3)              --------->DAG2        <---------ANAC58      --------->ANAC58               -- ->TOE2(3)             ---------->DOF2        <---------ANAC58  --------->ANAC46--------->ANAC58   == =================MADS_MADS      <----------DOF2  <---------ANAC58  --------->ANAC58      <----------DOF2   atttcttcacaaagcaaaacacagaaaaagccattctttttgccccttgagtgctttcagctcttcccacaaggtaggtcgcaaccaagtttctttatct  15306800                                 ------>ZmHOX2a(2)                               --------->ARR14(2)              <---------AGP1                               <---------ARR14(2)              --------->ARR11(3)                            ------>ZmHOX2a(2)                  <---------ARR14(2)                      --------->TOE2(3)                        --------->ARR14(2)               <---------TOE2(3)<------ZmHOX2a(2)            <---------MYB46(3)       <---------HSFB2a(2)       --------->YAB1<---------ANAC46                  <---------O2                   --------->HSFB2a(2) ---->ZmHOX2a(1)   <---------DOF5.7(2)             <-----------HVH21             <---------AHL20(2)-- ==================================HOX2a_HOX2a  ------>ZmHOX2a(2)------>ZmHOX2a(2) <-----------GT1 <-   ccttctcactcttaattgtggtaacgttgatccgatctgttcaaatttgatcgggtcacttggtggatctagtgactctgtattttttctcgatgaattc  15306900                                                                                            ------->MYC3                                                                                            <-------MYC2                                                                                            ------->MYC2                                                                                            <-------MYC3                                                                                           --------->ANAC55(2)                                                                                           <---------bZIP60(2)                                                                                           <---------ANAC58                                                                                           --------->O2                                                                                           <---------ANAC46                                                                                           <---------ANAC55(2)                                          <-----------RAV1(1)                              <---------TGA1a                                       <---------MYB52(1)                                  --------->TGA1a                                 <---------GLK1(1)                                         <---------ANAC55(1)                           --------->CCA1(2)  <---------WRKY18(1)                          <---------O2                          --------->ARR11(3) --------->WRKY12                              <---------ANAC58                          <---------ARR11(3) --------->WRKY38(1)                       <-----------HVH21           <---------ARR11(3)    --------->GLK1(1)                                    <---------bZIP60(1)   ------>ZmHOX2a(1)  ---------->DOF2 <----------DOF2                        <---------HSFB2a(2)  --- ------->ARR14(2) --------->HSFB2a(2) <---------DAG2                         --------->HSFB2a(2)  --- --------ARR14(2) <---------HSFB2a(2)--------->TOE2(3)             ----------->HVH21  --------->bZIP60(1)   aaatcctttcgaatgtcttactagaaaagatttagaattcctttatgttgaccttggtttattgtgccattgacaggttacagaagtaatgtcacgtgtg  15307000                 --------->LBD16                --------->ANAC46                    --------->LBD16                --------->ANAC58                   --------->ANAC55(2)                --------->ANAC58                   <---------ANAC58               <---------LBD16                     <---------ANAC55(1)                         <-----               --------->TOE1(2)                   <---------ANAC58                           <------             --------->ARR14(2)                    <---------ANAC55(2) <------ZmHOX2a(1)    ---------        >>>>>>>>>CBP60g                   <------ZmHOX2a(1)          >>>>>>>GRF7--------->GLK1(2)        >>>>>>>>>SARD1        <---------ANAC58     <---------ANAC46 <-----------RAV1(2)   <---------ATHB12 ---->TEIL   <---------ARR14(2)         <---------TOE2(3)<----------DOF2 ----------->GT1--------->WOX13(1) ------>SPL7 --------->PCF2   <---------ANAC58 <---------GLK1(1)  <-----------HVH21--------->WOX13(1)   tacgtcggaaatttggacccgcgagttactgagcgtgaacttgaggatgagttccgtgcctttggagttgtcaggaggtaagaatcaatccaatcaatca  15307100                                                                                                   --                                                                                             --------                                                                                      --------->WRKY38(1)                                                                                     <--------P  <---                                                                                    <---------ANAC58                                                                                    <-------GAMYB----       --------->REM1(1)                                <---------TOE2(3)  <---------ANAC46  <-------  --------->ANAC46                              <---------At4g35610      <---------ZAT14     -------- ----ICU4                ----------->GT1        <---------CCA1(2)        --------->ZAT18   --------->LBD16 ---ATHB12         <----------DOF2             ------->TEIL <-------TEIL --------->ZAT14<---------ANAC46 >WOX13(1)     ---------->ID1 ---------->DOF2 <---------AtLEC2   --------->ANAC55(2)<---------ANAC58   gttcgcgctacaattttgtcacttttgaagttaaaagtatccaattttgcatctctctaatgttcatatgtaatgtgcagtgtttgggttgcccgtagac  15307200  Previous    Next  AGI:  At4g31580.1    Description:  SRZ-22 (SERINE/ARGININE-RICH 22). similar to splicing factor, putative [Arabidopsis thaliana] (TAIR:AT2G24590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40907.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 15306660    to: 15308353    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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