Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ANAC58      --------->ANAC58  ------->GAMYB --------->DOF2                                                                ----------->GT1 ------->MYB52(1)                                               --------->ANAC58 >ANAC46                                               ---------->DOF2<----------DOF2 >ANAC58                                   <---------ATHB12     --------->ANAC46 >ANAC58                                 --------->WOX13(1)     --------->ANAC58                  ---   ctaacagcaagaaaatcgagagagcgagacacaatacctagttcaatcacttactaacaaagaagaacgcaactttctgagaagaaaatagttgaatcgg  15164900                                                                    --------->LBD16                                                                   <---------HSFB2a(2)                                                                   --------->HSFB2a(2)                                                                  ------>ZmHOX2a(2)                                                                  <---------LBD16                                                                 <------ZmHOX2a(2)                                                                --------->ARR14(2)                  ----------->RAV1(2)                  <---------ZAT2         <------------CBF                  --------->At4g35610                  <---------At4g35610   --------->ATHB12                  <---------At4g35610                  --------->ZAT2<---------MYB52(1)                 ------->TEIL                  <----------DOF2  <---------ARR14(2)              --------->ANAC58              --------->ARR11(3)  --------->ARR11(3)               ----              --------->ANAC46              <---------ARR11(3) <------ZmHOX2a(1)                 ----              --------->ANAC58         ==================================HOX2a_HOX2a   --------->ANAC58        --------->At4g35610            <------ZmHOX2a(1)      ----------->ARR10        --------->ANAC46  --------->At4g35610          <------ZmHOX2a(1)       --------->At4g35610  <---------YAB1     ------  <---------At4g35610    >>>>>>>>>TBF1 =================================HOX2a_HOX2a    --------->ANAC58 ------>ALFIN1*TSS--------->ZAT2  ----------->HVH21   <-----------RAV1(1)   <---------AHL20(2)-------   atggagcagaagctaaacgcacctgaagaagaaggactgaaggagagacctttactctgctgctaggatccggaagttttaattgggccacgaaaaaccg  15165000                                                                                ------>ZmHOX2a(2)                                                                               ===================HOX2a_HOX2a                                                                              --------->ARR11(3)                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                              <---------ARR11(3)                                                                              <---------ARR11(1)                                                                              <---------AGP1                                                                             <---------ARR14(1)                                                                          <---------LBD16------>ZmHOX2a(2)                                                                 ----------->GT1==================HOX2a_HOX2a                                                              <---------LBD16<------NtERF2           <------------CBF      --------->ANAC46             -------->ZAP1<---------ANAC58          --------->ATHB12       --------->ANAC58           <---------WRKY18(1)<------ZmHOX2a(2)         <---------YAB1          --------->ANAC58          --------->WRKY38(1)<-----------ARR10     -  ---------->DOF2           --------->ANAC46               --------->WRKY12<---------ANAC46------>ZmHOX2a(1) -->MYB83<---------AHL20(2) ----------->HVH21              ----------->HVH21 <---------CCA1(2)<------ -->MYB46(1)        --------->ANAC58                       --------->WRKY45<---------ANAC58<---------YAB1 --->DEAR3(1)       --------->ANAC58              --------->YAB1--------->LBD16--------->GLK1(1)  <-- -->DEAR3(2)        --------->ANAC46--------->GLK1(1)--------->YAB1     XXXXXXXXXXXXXXXXXXXX>MIR862-3P   acccaaaagttttaattgggccacgaaaacccgacccgaaatctattttgactaataagagttgaccgggtaatttggcggatctacttgatcctgattt  15165100                                                                                                -----                                                                                               ------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              -------        --------->LBD16                                                           --------->LBD16  ----------->HVH21                                                     --------->ANAC46      -------  --------->ANAC46          --------->At4g35610                     <-----------GT1           <------ -------->ANAC46         <---------At4g35610                      <----------DOF2 ------>NtERF2<----- ---WOX13(1)      --------->ZAT18     --------->LBD16       <---------ICU4       --------->ANAC46 ---------GT1   --------->ANAC46  --------->ANAC46          <---------GLK1(2)   <---------LBD16<-----   atacccgacccgagttagaaggcactaagcagataaaccccagagactgagtaaacccttaagaatttctttaccagacatctccgccattaacaagatc  15165200                                              --------->ATHB12                                           <-------GAMYB ->ZmHOX2a(2)                         --------->TGA1a --->GLK1(1)                          <---------TGA1a ---ARR11(3)                          --------->O2                                          <-------- -->ARR14(2)                   <---------GLK1(2)                                            --------- ---AGP1                       <---------ARR14(2)                                   <---------ZAT14 ---ARR14(2)                   --------->ARR14(2)                                   --------->ZAT14 -----ARR10                 --------->ANAC55(2)                                    --------->AtLEC2 -->ARR11(3)               <---------LBD16 <---------At4g35610                 ------------>CBF -->ARR14(3)           --------->ANAC58   <---------MYB46(3)                   <---------YAB1 ---ARR14(3)           --------->ANAC58<-----------HVH21                      --------->TOE2(3) ----GLK1(1)       --------->YAB1     =============MYC_MYB                 --------->ARR14(2) -ZmHOX2a(2)      <---------YAB1  <-----------GT1        --------->GLK1(2) <---------ARR14(2)       <   tctcttcttctactcgatttatgataagctacggattcactcgtcggatgatttgaaagtttctgaatcaaacagagtattctcaatgcagagaaccatc  15165300         --------->At4g35610         <---------At4g35610      <---------At4g35610      --------->ATERF1(1)      --------->At4g35610     <---------RAP2.3(1)    <---------RAP2.3(2)    <---------ANAC46    <---------ANAC58    <---------ANAC58    <---------RAP2.6(2)    <---------RRTF1(2)   <---------LBD16 -HSFC1(2)                                                   <---------TOE1(3) >HSFC1(2)                    <---------ZAT14                <---------TOE2(3)              --------- ---------TGA1a      <<<<<<<<<TBF1 --------->ZAT14------>ZmHOX2a(1)                       -----------   tcacttgcggctgctaagtcttcttcttcgacttcagttctgtctcttcatcctctcatggctaaggtttgtgtttcgactcttacgctggtgagatact  15165400                                 <---------AHL20(2)                           <------MYB46(1)                           <------MYB83                   ---------->ID1                 <---------AHL20(2)               <-----------GT1                 --------->AHL20(2)            <---------YAB1     ----------->ARR10    --------->MYB46(2) <---------ICU4      <---------ANAC46                 <-- >ARR11(3)      --------->AHL20(2)           --------->YAB1      <---------ANAC58                 --- >ARR10<---------GLK1(2)  --------->MYB59   <---------ATHB12     <---------ANAC58               <----   gaaatgttagattctcaatttaaaaagtttggtattttatggctaaatcattatactctcgtcgttttcgtattgaaatggagtcgaatttgtttcagtg  15165500                                                                          <---------ANAC55(1)                                                                          --------->ANAC55(2)                                                                          <---------ANAC55(2)                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                          <---------ANAC46    <------                                                                    <---------YAB1            <------                                                                 ----------->TGA1             -------          <---------ANAC46                                    --------->GLK1(2)        <---------REM1(1)         ---------->ID1                                      <---------ARR14(2)        <-----------RAV1(1) -------At4g35610                                            --------->ARR14(2)        <---------MYB46(3) ------>At4g35610                                            <---------GLK1(2)      <-----------RAV1(1) -----ZAT18    <---------TOE2(3)            --------->ZAT6 ----------->ARR10      <----------DOF2   agcttcaatttttcgtttatgttatttagatgtgtttgaaaattcaacagtagaactcatggagattctgacgattacttgtttctttgttgttgcagtt  15165600                               ------>ZmHOX2a(1)  <---------ZAT14        --------->ZAT2                                          <---------ZAT2  --------->ZAT14        --------->At4g35610                                     --------->ZAT2 ----- --------->ALFIN1        <---------ZAT2 --------->ZAT14                          <---------At4g35610 ---At4g35610            <---------At4g35610                <---------ANAC46     --------->At4g35610 -GAMYB                 <---------TOE1(2)    <---------MYB46(3)                 <---------TOE1(2) -->At4g35610       <-----------GT1  ------>ZmHOX2a(1)--------->ETT(2)     ------->TEIL     ---------   gcagtgcagggcgattcaaaatttcccagcttcctcttcctcttcagtagttcgggtcgatagagtgtatagaaatgtatcccagcttcagtttaaaaga  15165700                                                                                      <---------ARR14(2)                                                                                      --------->ARR14(2)                                                                                     --------->At4g35610                           --------->ZAT14                                           <---------At4g35610                           <---------ZAT18                                           <---------ZAT2                           --------->ZAT18                                           --------->ZAT2                           <---------ZAT14                               <---------ALFIN1<---------ALFIN1 ------>GT1           <---------ANAC58                                 ----------->RAV1(1) ->DOF2               <---------ANAC58                       <---------MYB52(1)   <---------At4g35610   gaaaattcaagttgtcttaagttagcttgtgcacttccttcgcatctaagtcttctcggttctcttagttatgcaacacattggagcagctccacttcaa  15165800  Previous    Next  AGI:  At4g31200.1    Description:  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO43439.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain Regulation of nuclear pre-mRNA protein (InterPro:IPR006569) Range:  from: 15161642    to: 15164914    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g31210.1    Description:  DNA topoisomerase family protein. similar to DNA topoisomerase III alpha, putative [Arabidopsis thaliana] (TAIR:AT5G63920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67233.1); similar to DNA topoisomerase I [alpha proteobacterium BAL199] (GB:ZP_02186840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43980.1); contains InterPro domain DNA topoisomerase, type IA, DNA-binding; (InterPro:IPR003602); contains InterPro domain Toprim subdomain; (InterPro:IPR006154); contains InterPro domain DNA topoisomerase, type IA, central region, subdomain 1; (InterPro:IPR013824); contains InterPro domain DNA topoisomerase, type I Range:  from: 15165286    to: 15172693    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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