Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->LBD16         <-----------RAV1(1)                                                      <---------ANAC58       <-------GAMYB                                                      <---------ANAC58      <---------MYB46(3)                                                 <-----------RAV1(1)        --------->MYB55(2)                                                --------->ARR11(3)          --------->MYB111(2)                                               <------ZmHOX2a(1)           <--------P                                       --------->ARR14(2)    --------->GLK1(1) <---------REM1(1)                                     XXXXXXXXXXXXXXXXXXXX>MIR419          <-------GAMYB                                    <---------ANAC46 <---------LBD16     <---------MYB46(3)        <------ZmHOX2a(1)           <---------WOX13(1)<---------ANAC46  <---------YAB1<-------GAMYB--     <------ZmHOX2a(1)     --------->ATHB12  <---------TOE2(3)          <---------TOE2(3)       ----- -----ZmHOX2a(1)          <-------TEIL <---------ARR14(2)    <---------GLK1(1) <---------MYB46(3) <--   aggatgaggaggaatgaaaccagaagcattcattggtgatggatactgaggatgttgcggatgaaatccgaattgtggttgttgttgctgttgaaagtta  15164500                --------->At4g35610             <-------GAMYB            <---------MYB46(3)          --------->At4g35610          <---------At4g35610        <---------RAP2.6(2)       <---------At4g35610   <-----------RAV1(1)    --------->DAG2 ------->ARR11(3)         <---------TOE2(3)  --------->At4g35610            <---------AHL20(2)   <--- ---->MYB59 <-----------RAV1(1)             ----------->RAV1(1)          ------->TEIL         <------ ----ZmHOX2a(1) <---------At4g35610       --------->At4g35610     <------ZmHOX2a(2)     --------->ZAT6   ggaccttgttgctgctgttgctgagcataaggtaacccagaagaagcagcataatcgtgctgtcttcgatccatgtatataaactctgtaacacttgtgt  15164600                                                                                                    -                                                                                                    <                                                                   --------->AHL20(2)              <-         --------->At4g35610                                   <---------YAB1                 -------         <---------At4g35610  ----------->GT1                  --------->AHL20(2)        --------->HSFB2a(2)      <-------TEIL   --------->LBD16            ----------------->AGL1                   <---------HSFB2a(2) ------ANAC46        ------>ZmHOX2a(1)       <----------DOF2   <---------AHL20(2)       <---------LBD16 -----RAV1(1)       --------->TOE1(2)   ---------->DOF2       --------->AHL20(2)----------->GT1    --   tgtatagattcagctaagtgttcctgagaagattgtaaaaacaaaagctttcgaaattgggccatataattcaatacgagagaagtaattcccagaaggt  15164700            ---------->DOF2         --------->ANAC46         --------->ANAC58                                                                   ---------    --------->ARR14(2)                                                                      ---------    <---------ARR11(3)                                                                      ---------    <-----------ARR10                                                             --------->At4g35610    --------->ARR11(3)                                                           --------->GLK1(2) -------->YAB1                                                                   <---------ARR14(2) ---------ICU4                         ----------->GT1               --------->bZIP60(1) <---------REM1(2) --------ATHB12                        <---------ZAT6          --------->DAG2    --------->ARR14(2) - ---->GT1--------->ANAC58         --------->ANAC46            ---------->DOF2   <---------GLK1(2)  -- ------->ICU4                    <---------REM1(2) ----------->GT1   <---------bZIP60(1) <---------ZAT14   aatcaatatctacgcaaagagaaacaccgaaactatacacagtgtaaattgaagagtttaacaaaaaagcgacatcgcttaagaatctgactacacgacc  15164800      --------->ANAC58      --------->ANAC58  ------->GAMYB >ANAC58                                                                       ----------->GT1 >ANAC58                                                        --------->ANAC58 >ANAC46                                               ---------->DOF2<----------DOF2 --------->DOF2                            <---------ATHB12     --------->ANAC46 ------->MYB52(1)                        --------->WOX13(1)     --------->ANAC58                  ---   ctaacagcaagaaaatcgagagagcgagacacaatacctagttcaatcacttactaacaaagaagaacgcaactttctgagaagaaaatagttgaatcgg  15164900                                                                    --------->LBD16                                                                   <---------HSFB2a(2)                                                                   --------->HSFB2a(2)                                                                  <---------LBD16                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                                                                <---------ARR14(2)                  --------->ZAT2                       <---------At4g35610    <------------CBF                  <---------At4g35610                  <---------ZAT2        --------->ATHB12                  ----------->RAV1(2)                  --------->At4g35610  <---------AHL20(2)                 ------->TEIL                  <----------DOF2  --------->ARR11(3)              *TSS--------->At4g35610       --------->ARR11(3)  --------->ARR14(2)               ----              --------->ANAC58              <---------ARR11(3) <------ZmHOX2a(1)                 ----              --------->ANAC46         =================================HOX2a_HOX2a            ------        --------->At4g35610            ==================================HOX2a_HOX2a   --------->ANAC58  <---------At4g35610             ----------->HVH21    --------->ZAT2<---------MYB52(1)--------->ANAC46  --------->At4g35610    >>>>>>>>>TBF1 <------ZmHOX2a(1)      ----------->ARR10        --------->ANAC58 ------>ALFIN1--------->ANAC58 <------ZmHOX2a(1)      <-----------RAV1(1)   <---------YAB1    -------   atggagcagaagctaaacgcacctgaagaagaaggactgaaggagagacctttactctgctgctaggatccggaagttttaattgggccacgaaaaaccg  15165000                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                                              <---------ARR14(2)                                                                              <-----------ARR10                                                                              <---------AGP1                                                                              <---------ARR11(1)                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)                                                                             <------NtERF2                                                                          <---------LBD16------>ZmHOX2a(2)                                                                 ----------->GT1==================HOX2a_HOX2a                                                              -------->ZAP1<---------ANAC58           <------------CBF      --------->ANAC46             <---------LBD16<---------CCA1(2)<------          --------->ATHB12       --------->ANAC58           <---------WRKY18(1)===================HOX2a_HOX2a         <---------AHL20(2)      --------->ANAC58          --------->WRKY38(1)--------->ARR14(2)  ---------->DOF2           ----------->HVH21              --------->WRKY12<---------ANAC58------>ZmHOX2a(1) -->MYB83<---------YAB1     --------->ANAC46               --------->WRKY45<---------ANAC46<---------YAB1 -->MYB46(1)        --------->ANAC58                       ----------->HVH21 <---------ARR14(1)     - --->DEAR3(1)       --------->ANAC46              --------->YAB1--------->LBD16--------->GLK1(1)  <-- -->DEAR3(2)        --------->ANAC58--------->GLK1(1)--------->YAB1     XXXXXXXXXXXXXXXXXXXX>MIR862-3P   acccaaaagttttaattgggccacgaaaacccgacccgaaatctattttgactaataagagttgaccgggtaatttggcggatctacttgatcctgattt  15165100                                                                                                -----                                                                                               ------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              -------        --------->LBD16                                                           ------>NtERF2<-----  ----------->HVH21                                                     --------->ANAC46      -------  --------->ANAC46          --------->At4g35610                     <-----------GT1           <------ ---WOX13(1)             <---------At4g35610                      <----------DOF2 --------->LBD16 -------->ANAC46  --------->ZAT18     --------->LBD16       <---------ICU4       --------->ANAC46 ---------GT1   --------->ANAC46  --------->ANAC46          <---------GLK1(2)   <---------LBD16<-----   atacccgacccgagttagaaggcactaagcagataaaccccagagactgagtaaacccttaagaatttctttaccagacatctccgccattaacaagatc  15165200                                              --------->ATHB12                                           <---------At4g35610 ->ZmHOX2a(2)                         =============MYC_MYB --->GLK1(1)                          --------->O2 ---ARR14(2)                          --------->TGA1a                                       <-------- -->ARR14(2)                   --------->ARR14(2)                                           --------- ---ARR11(3)                   <---------GLK1(2)                                    <---------ZAT14 ---AGP1                       <---------ARR14(2)                                   --------->ZAT14 -----ARR10                 --------->ANAC55(2)                                    --------->AtLEC2 -->ARR14(3)               <---------LBD16 <-------GAMYB                       <---------YAB1 -ZmHOX2a(2)           --------->ANAC58   <---------MYB46(3)                   ------------>CBF -->ARR11(3)           --------->ANAC58<-----------HVH21                      --------->TOE2(3) ---ARR14(3)       --------->YAB1     <---------TGA1a                      <---------ARR14(2) ----GLK1(1)      <---------YAB1  <-----------GT1        --------->GLK1(2) --------->ARR14(2)       <   tctcttcttctactcgatttatgataagctacggattcactcgtcggatgatttgaaagtttctgaatcaaacagagtattctcaatgcagagaaccatc  15165300         --------->At4g35610         <---------At4g35610      --------->ATERF1(1)      --------->At4g35610      <---------At4g35610     <---------RAP2.3(1)    <---------ANAC58    <---------ANAC58    <---------RRTF1(2)    <---------ANAC46    <---------RAP2.6(2)    <---------RAP2.3(2)   <---------LBD16 -HSFC1(2)                                                   <---------TOE1(3) >HSFC1(2)                    <---------ZAT14                <---------TOE2(3)              --------- ---------TGA1a      <<<<<<<<<TBF1 --------->ZAT14------>ZmHOX2a(1)                       -----------   tcacttgcggctgctaagtcttcttcttcgacttcagttctgtctcttcatcctctcatggctaaggtttgtgtttcgactcttacgctggtgagatact  15165400  Previous    Next  AGI:  At4g31200.1    Description:  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO43439.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain Regulation of nuclear pre-mRNA protein (InterPro:IPR006569) Range:  from: 15161642    to: 15164914    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g31210.1    Description:  DNA topoisomerase family protein. similar to DNA topoisomerase III alpha, putative [Arabidopsis thaliana] (TAIR:AT5G63920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67233.1); similar to DNA topoisomerase I [alpha proteobacterium BAL199] (GB:ZP_02186840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43980.1); contains InterPro domain DNA topoisomerase, type IA, DNA-binding; (InterPro:IPR003602); contains InterPro domain Toprim subdomain; (InterPro:IPR006154); contains InterPro domain DNA topoisomerase, type IA, central region, subdomain 1; (InterPro:IPR013824); contains InterPro domain DNA topoisomerase, type I Range:  from: 15165286    to: 15172693    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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