Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <---------ANAC55(2)                                                              --------->ANAC46                                                              --------->ANAC58  <---------ZAT14 -------ARR11(3)                                              --------->ANAC58  --------->ZAT18 ---->ANAC58                                              --------->CCA1(2)     --------->ZAT14 ---->ANAC58                                         ---------->DOF2      <---------ANAC58          < >ANAC58               --------->ANAC46           --------->AtLEC2        <---------ANAC58<---------ANAC55(2) >ANAC58        <---------ARR11(3)           ----------->HVH21--------->ANAC55(1)         -----------   gaactcatagattacctagagcttcacaaaacacaaaaacacttgatatgacatgaaaagaaacacgcaaaccttgccttggtgtactggataagtaaaa  15155500                                                                       --------->ANAC58                                                                       --------->ANAC58                                                           <------ZmHOX2a(2)        <----------ID1               <---------ICU4       <---------ARR11(3)        ----------->GT1     <---------ETT(2)              --------->ARR11(3)    ---------->DOF2        <------ZmHOX2a(2)     ----------->GT1   --------->ANAC46 ------ZmHOX2a(2)    --------->ARR14(2)        ---------->DOF2    ------->GAMYB >GT1 ----------->GT1<---------ARR14(2)     --------->ANAC46--------->YAB1   cgatcgaaaagagaaaaactctgaatccgatcgacaaaatcaatacccacaaagtaataagatcataacccacaagcttacttctgatcaaatttcagtg  15155600                               <------ZmHOX2a(1)                            <------ZmHOX2a(1)                                         <-----------GT1                          --------->ALFIN1                              --------->HSFB2a(2)     <---------MYB59     <------ZmHOX2a(1)       <---------DEAR3(2)     <---------HSFB2a(2)     --------->TOE2(3) --------->ALFIN1        <------NtERF2         <-----------GT1<-----------GT1     --------->TOE1(3)<------ZmHOX2a(1)       <-----------HVH21 <----------DOF2    *TSS    <---------   ------->TEIL  --------->ALFIN1      <-----------HVH21   <-----------GT1       <---------GLK1(2)   ctaagaacctaaacaagaggtggaggaggaggaggaagaagagtcagtcgtcgcttcccatttactctttttttccagactccgattttctctctttttt  15155700                                                                <-------TEIL                                                              <---------ARR14(2)                                                          <------NtERF2                                                         ------>NtERF2                                                        <---------ATERF1(2)            <---------ZAT2                                                       <---------ANAC58       <------------CBF                                                   <----------DOF2 <---------MYB52(1)  --------->ZAT2         <---------AHL20(2)                        ------>ZmHOX2a(1)         --------->ATHB12 -------        --------->AHL20(2)               --------->MYB59--------->ATERF1(2)  <---------AHL20(2)------        <---------AHL20(2)         --------->AHL20(2)  <---------ANAC58     <---------AHL20(2)-------    <---------YAB1                 <---------AHL20(2) --------->At4g35610   --------->AHL20(2)------- <---------YAB1---------->ID1     --------->AHL20(2)  --------->ZAT2    <---------YAB1 --------->At4g35610 <---------AHL20(2)            <---------AHL20(2)<-----------------AGL1 <---------AHL20(2)   -------- -DOF2 <---------YAB1         <---------YAB1 --------->SPL7   --------->ARR14(2)       <---------At4g35610   ttttttattattaatttgttttttttgggatttttatttaattttggtccgtcctttgctggcaaattcgtttttttattaattgggacagcttccgagc  15155800                                                                              <------------CBF                                                                             <---------AHL20(2)                                                                             --------->ATHB12                                                                        <---------AHL20(2)                                     <---------------AGL15              <---------YAB1                            <-------MYC3                             <---------AHL20(2)                            ------->MYC3     ------------>CBF        --------->AHL20(2)                            <-------MYC2    --------->ANAC58        <---------AHL20(1)                            ------->MYC2  <---------ANAC58          <---------AHL20(2) -->ANAC58                 --------->ANAC46 --------->ANAC58        --------->AHL20(2) --------->At4g35610 ------>CBF                --------->ANAC58 --------->ANAC46  --------->TOE1(3)        <---------At4g35610 -->ANAC58                 --------->ANAC58--------->LBD16    --------->TOE2(3)      *TSS<-----------HVH21 -->ANAC46               <---------ALFIN1 <---------ANAC58   --------->ZAT6 --------->AHL20(2) ->LBD16      ---------->DOF2   <----------DOF2            <-----------GT1  <---------AHL20(2)   aatactctctccgatagaaagtgtctcacacgcgctctaccattccgagcaatacacattttaaccctaatttttttattaattgggacagcttcagagc  15155900                      <---------TOE1(3)                  --------->At4g35610                                         <-----------HVH21               <---------At4g35610                                           --------->ANAC46              <---------DEAR3(1)                                             --------->bZIP60(2)             <------NtERF2                                         --------->ARR14(2)            <---------ATERF1(1)                                 --------->LBD16            <-----------HVH21                                  --------->HSFB2a(2)<---------At4g35610           --------->DEAR3(1)      <---------ALFIN1            <---------HSFB2a(2)--------->At4g35610           <---------DEAR3(1)<---------ICU4            --------->ZAT2       --------->LBD16     <---------AtLEC2 <---------TOE2(3)                <---------ZAT2    <------ZmHOX2a(2)  <----------DOF2 <---------At4g35610                  <---------At4g35610 <-----------RAV1(2)   aatactttcatggccgtcgctgctaaggtcatcatccccactatcgctattgtctccagctagtcccagaattcgatccaggtcatcttcgtcttcatca  15156000                                           =============================HOX2a_HOX2a                                           ------>ZmHOX2a(2)                                         <---------ARR14(2)                      <---------ARR11(3)                                  --------->ATHB12                               --------->ARR11(3)                                 <---------YAB1                     <---------YAB1                               --------->YAB1           <-----------RAV1(1)    --------->MYB59                               <---------ICU4           <---------MYB46(3)     ----------->ARR10                              <---------YAB1 --------->LBD16        <---------------AGL15                            <---------ICU4==============================HOX2a_HOX2a                            --------->YAB1<------ZmHOX2a(2)         --------------->AGL15           -                    <---------ANAC58     --------->ARR14(2)        <-----------------AGL1           -                    <---------ANAC58 <---------LBD16  ----------->RAV1(2)    <--------P          <---               <---------At4g35610<---------ICU4 --------->YAB1  ------>ZmHOX2a(1)        <----------DOF2   tcttcatcttcatcttcatcttccgtctcatcatcatcatcgggatccgagtcatcatctgttgctccttctcataggggtaaggtcttcttctttctcc  15156100                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                  <-----------ARR10                                                  <---------ARR11(3)                                                  --------->ARR11(3)                                                  <---------ARR14(2)                                                  --------->AGP1                               <-----                                                  --------->ARR14(2)                           ------                                                ----------->ARR10                              <-----                                           --------->ANAC58                                   <------                                           --------->ANAC58  <---------MYB52(1)           --------->MYB52(1)                                         <---------ANAC58   <-------GAMYB  --------->ARR11(3) -------        <---------MYB52(1)               <---------ANAC58  <-----------RAV1(1)           <---------SPL7 -------->YAB1                       <---------ANAC58 ------->TEIL        --------->YAB1<---------ANAC58 -------->TOE2(3)               <-----------RAV1(1)--------->CCA1(2)     <---------YAB1 <---------ANAC58 -------DOF2       <---------AHL20(2)<---------ANAC58 -------->P     <<<<<<<<<GATA-1<----------DOF2   tttcttaatcgttttttttgtttaatagtttgttttgttgtttgctcgctaagatctacctctgttgttttatctatgattttgtgctttgcttacggtt  15156200      <---------ANAC46      <---------ANAC58      <---------ANAC58    <---------ANAC46   <---------MYB52(1)  <-------GAMYB                                        --------->TOE2(3) <-----------RAV1(1)                     ----------->GT1 ----ARR14(2)                           <---------TOE1(3) --->ARR14(2)                           <---------TOE2(3)                                        <--- ----MYB52(1)                           <---------YAB1 <----------DOF2                     ---------- -GAMYB  ------->TEIL        <---------YAB1      --------->TOE2(3)                --------->ARR11(3) -->At5g28300    --------->ICU4    <------ZmHOX2a(1)   --------->TOE1(3)         <---------CCA1(2)   actctgttgtgtatgtgtattgattttgagcattataggattatggtttaatctaaactttaaaattagagaatatcgattgtttatcttggttttgtac  15156300                                                                                   --------->AHL20(2)                                                                     <----------DOF2   --------->AHL20(2)   <-----------GT1             <---------------AGL15 <---------TOE1(3)     <---------AHL20(2)  <---------ZAT14              --------------->AGL15 <---------TOE2(3) --------->AHL20(2)         --- -------DOF2               <---------CCA1(2)    <---------ZAT6       --------->TOE1(3) <---------AHL20(2) ----->AtSPL8 <---------ZAT6------->TEIL  <---------YAB1             --------->TOE2(3)<---------AHL20(2)   tttgtttactgttcttgtgttatgtctgtgtatctattttgagcattatagagttagggtttacttataaactttaaataatcgattatttattttggtt  15156400  Previous    Next  AGI:  At4g31170.1    Description:  protein kinase family protein. similar to serine/threonine/tyrosine kinase, putative [Arabidopsis thaliana] (TAIR:AT2G24360.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06448.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06449.1); similar to unknown [Populus trichocarpa] (GB:ABK95868.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine Range:  from: 15153188    to: 15155683    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g31180.1    Description:  aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative. similar to aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G26870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43985.1); similar to unknown [Picea sitchensis] (GB:ABK25168.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ56912.1); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aminoacyl-tRNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/helicase-type; (In Range:  from: 15155885    to: 15159595    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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