Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ---------->DOF2                                                               <---------------------WRI1               --------->REM1(1)                          --------->AHL20(2)           <---------At4g35610                            <---------AHL20(2)           --------->At4g35610           --------->ATHB12 <---------AHL20(1)      --------->At4g35610                <---------ICU4   --------->AHL20(1)      --------->ZAT2                    --------->ICU4   --------->AHL20(2)      <---------ZAT2 ----------->GT1    <---------YAB1   <---------AHL20(2)                  <-------      <---------At4g35610        <-----------GT1      <---------ICU4                    ----------->GT1 ----->YAB1--------->ZAT2     --------->YAB1          --------->ATHB51      ----------->GT1  -------- ----DOF2  <---------ZAT2     ----------->GT1      --------->TOE2(3)      ---------->DOF2<-----------HVH21   aataactcagctcagcttcaactaggtaaaaatagtaacttcatcattgaattccataattttatttcaaagaaaacaaagaaaaatgagaggtcatatg  15155300                                                                             --------->YAB1                                                                          <---------------AGL15                                                                          --------->TOE2(3)                                                                          --------------->AGL15                                                                         ----------------->AGL2                                                                         ----------------->AGL3                                                               --------->ARR14(1)                                                               <------ZmHOX2a(2)                  <--                                                               --------->CCA1(2)                -----                                                              <---------ARR14(2)                -----                                                              --------->ARR14(2)            ---------                             <---------ICU4                   --------->AGP1--------->ICU4---------->DOF2                            <---------YAB1        --------->DAG2     <---------ICU4    --------->At4g35610                          <---------ICU4         ---------->DOF2------>ZmHOX2a(2)     --------->ANAC58                          --------->YAB1    --------------->AGL15   <---------ATHB51--------->CCA1(2)                     <---------AHL20(2)     ===============================================MADS_MADS --At4g35610         --------->AHL20(2)     <---------------AGL15  <---------MYB52(1) --------->ANAC58 ->At4g35610    --------->AHL20(2)    --------->ANAC46      ----------->ARR10<---------ICU4 ---------   agaaaactcgtggatgaaaaaaataaaatcatcatttcccacaaaacccaaaaaagtagacacagatccgataattccataatgagataagctaaagcaa  15155400                                                              --------->ANAC58                                                              --------->ANAC58  <---------ZAT14                                                              --------->ANAC55(1) -------ARR11(3)                                              <---------ANAC55(2) ---->ANAC58                                              --------->CCA1(2)     --------->ZAT18 ---->ANAC58                                         ---------->DOF2      <---------ANAC58----------- >ANAC58               --------->ANAC46           --------->AtLEC2        <---------ANAC58<---------ANAC55(2) >ANAC58        <---------ARR11(3)           ----------->HVH21--------->ANAC46  --------->ZAT14     <   gaactcatagattacctagagcttcacaaaacacaaaaacacttgatatgacatgaaaagaaacacgcaaaccttgccttggtgtactggataagtaaaa  15155500                                                                       --------->ANAC58                                                                       --------->ANAC58                                                           <------ZmHOX2a(2)        <----------ID1               <---------ICU4       --------->ARR11(3)        ----------->GT1     <---------ETT(2)              <---------ARR11(3)    ---------->DOF2        <------ZmHOX2a(2)     ----------->GT1   --------->ANAC46 >GT1 ----------->GT1--------->ARR14(2)        ---------->DOF2    ------->GAMYB ------ZmHOX2a(2)    <---------ARR14(2)     --------->ANAC46--------->YAB1   cgatcgaaaagagaaaaactctgaatccgatcgacaaaatcaatacccacaaagtaataagatcataacccacaagcttacttctgatcaaatttcagtg  15155600                               <------ZmHOX2a(1)                            <------ZmHOX2a(1)                                         <-----------GT1                          --------->ALFIN1                              --------->HSFB2a(2)     --------->TOE2(3)   <------ZmHOX2a(1)       <---------DEAR3(2)     <---------HSFB2a(2)     --------->TOE1(3) --------->ALFIN1        <------NtERF2         <-----------GT1<-----------GT1     <---------MYB59  <------ZmHOX2a(1)       <-----------HVH21 <----------DOF2    *TSS    <---------   ------->TEIL  --------->ALFIN1      <-----------HVH21   <-----------GT1       <---------GLK1(2)   ctaagaacctaaacaagaggtggaggaggaggaggaagaagagtcagtcgtcgcttcccatttactctttttttccagactccgattttctctctttttt  15155700                                                                <-------TEIL                                                              --------->ARR14(2)                                                          <------NtERF2                                                         ------>NtERF2                                                        --------->ATERF1(2)            <---------At4g35610                                                       <---------ANAC58       <------------CBF                                                   <----------DOF2 <---------MYB52(1)  --------->At4g35610         <---------AHL20(2)                        ------>ZmHOX2a(1)         <---------AHL20(2)------        <---------AHL20(2)               --------->MYB59<---------ATERF1(2)  --------->ATHB12 -------        --------->AHL20(2)         --------->AHL20(2)  <---------ANAC58     <---------AHL20(2)-------    <---------YAB1                 <---------AHL20(2) --------->At4g35610   --------->AHL20(2)------- <---------YAB1---------->ID1     --------->AHL20(2)  --------->ZAT2    <---------AHL20(2)   -------- <---------AHL20(2)            <---------AHL20(2)<-----------------AGL1 <---------YAB1 <---------ZAT2 -DOF2 <---------YAB1         <---------YAB1 --------->SPL7   <---------ARR14(2)       --------->ZAT2   ttttttattattaatttgttttttttgggatttttatttaattttggtccgtcctttgctggcaaattcgtttttttattaattgggacagcttccgagc  15155800                                                                              <------------CBF                                                                             --------->ATHB12                                                                             <---------AHL20(2)                                                                        <---------AHL20(2)                                     <---------------AGL15              <---------YAB1                            ------->MYC3                             --------->AHL20(2)                            <-------MYC3     ------------>CBF        <---------AHL20(2)                            <-------MYC2    --------->ANAC58        --------->AHL20(2)                            ------->MYC2  <---------ANAC58          <---------AHL20(1) ------>CBF                --------->ANAC58 --------->ANAC58        <---------AHL20(2) --------->At4g35610 -->ANAC58                 --------->ANAC46 --------->ANAC46  --------->TOE1(3)        <---------At4g35610 -->ANAC58                 --------->ANAC58--------->LBD16    --------->TOE2(3)      *TSS<-----------HVH21 -->ANAC46               <---------ALFIN1 <---------ANAC58   --------->ZAT6 <---------AHL20(2) ->LBD16      ---------->DOF2   <----------DOF2            <-----------GT1  --------->AHL20(2)   aatactctctccgatagaaagtgtctcacacgcgctctaccattccgagcaatacacattttaaccctaatttttttattaattgggacagcttcagagc  15155900                      <---------TOE2(3)                  --------->At4g35610                                         <-----------HVH21               <---------At4g35610                                           --------->bZIP60(2)              <---------DEAR3(1)                                             --------->ANAC46             <------NtERF2                                         --------->ARR14(2)            <---------ATERF1(1)                                 --------->LBD16            <-----------HVH21                                  <---------HSFB2a(2)<---------At4g35610           <---------DEAR3(1)      <---------ALFIN1            --------->HSFB2a(2)--------->At4g35610           --------->DEAR3(1)<---------ICU4            <---------At4g35610  --------->LBD16     <---------AtLEC2 <---------TOE1(3)                <---------ZAT2      <-----------RAV1(2)  <----------DOF2 <---------At4g35610                  --------->ZAT2    <------ZmHOX2a(2)   aatactttcatggccgtcgctgctaaggtcatcatccccactatcgctattgtctccagctagtcccagaattcgatccaggtcatcttcgtcttcatca  15156000                                           =============================HOX2a_HOX2a                                           ------>ZmHOX2a(2)                                         <---------ARR14(2)                      --------->ARR11(3)                                  --------->ATHB12                               <---------ARR11(3)                                 <---------YAB1                     --------------->AGL15                               --------->YAB1           <---------MYB46(3)     ----------->ARR10                               <---------ICU4           <-----------RAV1(1)    --------->MYB59                              <---------YAB1 --------->LBD16        <---------------AGL15                            <---------ICU4==============================HOX2a_HOX2a                            --------->YAB1<------ZmHOX2a(2)         <---------YAB1                  -                    <---------ANAC58     --------->ARR14(2)        <-----------------AGL1           -                    <---------ANAC58 <---------LBD16  ----------->RAV1(2)    <--------P          <---               <---------At4g35610<---------ICU4 --------->YAB1  ------>ZmHOX2a(1)        <----------DOF2   tcttcatcttcatcttcatcttccgtctcatcatcatcatcgggatccgagtcatcatctgttgctccttctcataggggtaaggtcttcttctttctcc  15156100                                                    ------>ZmHOX2a(2)                                                   --------->CCA1(2)                                                  <---------ARR11(3)                                                  --------->AGP1                                                  <---------ARR14(2)                                                  --------->ARR14(2)                                                  --------->ARR11(3)                           <-----                                                  <-----------ARR10                            ------                                                ----------->ARR10                              <-----                                           --------->ANAC58                                   <------                                           --------->ANAC58  <---------MYB52(1)           --------->MYB52(1)                                         <---------ANAC58   <-------GAMYB  --------->ARR11(3) -------        <---------MYB52(1)               <---------ANAC58  <-----------RAV1(1)           <---------SPL7 -------->TOE2(3)                    <---------ANAC58 ------->TEIL        --------->YAB1<---------ANAC58 -------->YAB1                  <-----------RAV1(1)<------ZmHOX2a(2)     <---------YAB1 <---------ANAC58 -------DOF2       <---------AHL20(2)<---------ANAC58 -------->P     <<<<<<<<<GATA-1<----------DOF2   tttcttaatcgttttttttgtttaatagtttgttttgttgtttgctcgctaagatctacctctgttgttttatctatgattttgtgctttgcttacggtt  15156200  Previous    Next  AGI:  At4g31170.1    Description:  protein kinase family protein. similar to serine/threonine/tyrosine kinase, putative [Arabidopsis thaliana] (TAIR:AT2G24360.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06448.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06449.1); similar to unknown [Populus trichocarpa] (GB:ABK95868.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine Range:  from: 15153188    to: 15155683    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g31180.1    Description:  aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative. similar to aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G26870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43985.1); similar to unknown [Picea sitchensis] (GB:ABK25168.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ56912.1); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aminoacyl-tRNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/helicase-type; (In Range:  from: 15155885    to: 15159595    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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