Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    ------>MYB83                                                                                <---------MYB111(1)                                                                                --------->MYB46(3)                                                                                --------->AtMYB61                                                                                <---------MYB46(2)                                           <---------ZAT14                     --------->ANAC58                                       <---------------AtSPL8                  --------->ANAC58                                      <---------ANAC58                        ------>NtERF2                     ---------->DOF2  <---------ANAC46                    ----------->HVH21        >>>>>>>>>>>>>>>>>LFY          <---------ANAC58                    <---------ETT(1) --------->At4g35610       --------->ANAC58          <----------DOF2                         --------->SPL7    <---------At4g35610       --------->ANAC58       ------->TEIL --------->ZAT14      <---------TOE1(2) ------>MYB46(1)   atagctgtgaagccattggtccctaaagaatgaatctttagcttgtacagtctcaatgcttcatcgtagaattggtccgacaccaaacccttcagcttat  15120500                                                                                          ===========                                                                                          <---------ANAC58                                                                                          --------->ANAC55(2)                                                                                          <---------bZIP60(2)                                                                                          <---------ANAC46                                                                                          --------->bZIP60(1)                                                                                          <---------TGA1a                                                                                          <---------ANAC58                                                                                          <---------bZIP60(1)                                                                                          <---------ANAC55(1)                                                                                          --------->TGA1a                                                                                     -------->HAHB4                                                                                     <---------ICU4                                                                                     --------->YAB1                                                                                    <---------ATHB51                                                                                    --------->ICU4                                                                               ----------->GT1                                                                              ----------->GT1                                                                          ----------->HVH21             ---------->DOF2                     --------->RAP2.6(3)      <---------SPL7 <-----------   --------->ZAT2            ------->GAMYB <-----------GT1               --------->TOE1(1)<---------ANAC55(2)   --------->At4g35610      --------->DEAR3(1)  --------->MYB52(1)       --------->TOE2(1)<---------O2   --------->GLK1(1)        --------->ANAC58   --------->ANAC46         --------->At4g35610    <-----   <---------ZAT2           --------->ANAC58 --------->ZAT6  <-----------GT1 <---------ANAC46  ------ ------>NtERF2  <---------LBD16   ----------->HVH21------>NtERF2        <---------At4g35610  --------   tgccgagctccaagtttaagcgggaagacaacgcccttgacattataacacgacggcctagtttaacccatctcatcggacgggtaataatgacgtgccc  15120600                                                                                 <---------WRKY18(1)                                                           xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                           xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxx                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxx                                                        *TSS                   <----------DOF2xxxxxxx              <----------DOF2                           xxxxxxxxxxxxxxxxx>smallRNA(se3)      -------- <---------YAB1                                        --------->ANAC58       <-------GAMYB  -------- ========================bZIP_DOF                      --------->ANAC58  --------->DAG2    xxxxxxxxxx ------------TaNAC69(2)                                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxx ----ZAT18  <---------YAB1                        --------->DAG2       xxxxxxxxxxxxxxxxx>smallRNA(se3) --->ZAT18 <---------ARR11(3)                    ---------->DOF2 --------->MYB52(1)   xxxxxxxxxxxxxxx ->PCF2    --------->ARR11(3)              --------->ZAT14xxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ATHB12   actatgactgtattatctttgagaaatagtttgtgtttgattcagtaaacaaaaagcacccatggcctaatggataaggcgcttgacttctaatcaagcg  15120700        xxxxxxxxxxxxxxxx>smallRNA(i)       xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(s)    <---------PCF2                          <-----------GT1    <---------AHL20(2)   <---------DEAR3(2)                      <---------AHL20(2)  --------->AHL20(1) <---------ANAC46                <---------AHL20(2)           --------->YAB1 xxxxxxxxxxx>smallRNA(s)         <---------ICU4          --------->TOE1(3) xxxxxxxx>smallRNA(s)        --------->AHL20(2)          --------->TOE2(3) xxxxxxxxx>smallRNA(s)       <---------AHL20(2)          <---------DAG2 <---------AHL20(2)      ----- ->ANAC58            <---------ANAC46     --------->AHL20(2)  --------->AHL20(2)               <----- ->ANAC58  --------->PCF2    xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------AHL20(2)        ------- xxxxxxxxx>smallRNA(se3)    --------->AHL20(2)  <----------DOF2<---------AHL20(1)    <---------YAB1 xxxxxx>smallRNA(s)<---------ANAC46       <---------AHL20(2) <---------YAB1     <---------MYB46(3) x>smallRNA(s)<---------ALFIN1  --------->AHL20(2)    <-----------GT1   --------->AHL20(2)<---------AHL20(2)   attgtgggttcgagtcccactgggtgtgtatttaataaatacaatttaatctttttcaaccttattatattcaattttttgtttgttaatattcaattta  15120800                                                                        ------->MYC2                                                                        <-------MYC2                                                                        ------->PIF5                                                                        <-------PIF5                                                                        <-------MYC3                                                                        ------->MYC3                                                                        <-------PIF4                                                                        ------->PIF4                                                                       <---------ANAC58                                                                       --------->O2                                                                       <---------ANAC55(2)                                                                       <---------ANAC46                                                                       <---------ANAC58                                                                       <---------TGA1a                                                                       --------->TGA1a                                                                       <---------O2                                                                       --------->ANAC55(2)                                                                       ==============================                                                                       =============MYC_MYB                                                                      ------------>OsbHLH66                                                                    <------ZmHOX2a(2)                                                                   <---------ARR11(3)                                                                   --------->ARR11(3)                                                                  <---------GLK1(1)                                                              --------->ALFIN1                                                             ------->MYC2        <---------O2                                                             <-------PIF4        --------->O2                                                             <-------MYC3        --------->bZIP60(1)                                                             ------->PIF4      <---------DOF5.7(2)                                                             <-------PIF5     --------->WRKY12                                                             <-------MYC2     --------->WRKY38(1)                                                             ------->MYC4     ----------->HVH21                                                             ------->MYC3    --------->DOF5.7(2)                                                             <-------MYC4   <-------GAMYB       <----                                                             ------->PIF5 <-------TEIL          <----                                                            =====================bZIP_bZIP     <-----       --------->DAG2                                       <---------O2------->MYC4     <-----------RAV1(1)      ---------->DOF2                                       =========================================     <---------ATHB12                                       ========================MYC_MYB   *TSS--- ------------>CBF                                           --------->O2<-------MYC4     --------->ALFIN1 ----->DOF2           <---------ZAT18                       --------->TGA1a<---------ANAC58<---------RAP2.6(2) ----AHL20(2)         --------->ZAT18                       <---------TGA1a<---------ANAC58--------->ALFIN1 -->AHL20(2)      --------->ALFIN1                         ------------>OsbHLH66 <---------bZIP60(1)   aagcccaataaagttggaagatggtgggctagtaatgggtcgaggtttttgaatacagaagcacgtggagatcacgtgcgttgacgtcaaggtgtggctg  15120900         --------->HSFB2a(2)        =================HOX2a_HOX2a        ------>ZmHOX2a(2)        =====================================HOX2a_HOX2a      <---------AGP1      <---------ARR11(3)      --------->ARR11(3)      --------->ARR14(2)      <---------ARR14(2)     <---------CCA1(2)    <---------MYB46(3)   --------->ALFIN1             --------->HSFC1(1)    <------NtERF2          <---------ICU4  <---------MYB52(1)            <---------HSFB2a(2) --------->ETT(1)        <---------YAB1 =====bZIP_DOF                  --------->HSFB2a(2) <---------ANAC46      --------->YAB1 -----ZAT14                 <---------ANAC58     --------->ALFIN1        <---------ATHB12 -----SPL7                  <---------ANAC58  --------->DAG2           --------->WOX13(1) -----DOF2             <----------DOF2       ---------->DOF2       --------->ANAC58    <---------MYB46(3) =====bZIP_DOF    ------>ZmHOX2a(1)   <------ZmHOX2a(1)    ---------->DOF2<---------ICU4            - ---->TEIL   <---------GLK1(1)  <---------HSFC1(1)<-----------HVH21--------->ANAC58  <-------GAMYB  <   taccggtggatctcgaattcctcccctttggcttctcgaaggagaagaaaagtgtcggagagaaagaagaagccaatcatcatcgccagttgttcttctc  15121000                                                             --------->ARR14(2)                                                             <---------GLK1(2)        <---------ARR14(2)               ------>ZmHOX2a(1)                             <---------ARR14(2)       --------->ARR14(2)           <---------ARR14(2)                           --------->ZAT18           ----------------->AGL2           --------->ARR14(2)                           <---------DEAR3(1)        <-----------------AGL2   --------->ARR14(2)                                  --------->ALFIN1     <-----------HVH21   <---------ARR11(3)                            --------->ANAC58         --------->LBD16   --------->ARR11(3)                            --------->ANAC58        --------->LBD16    <-------- -------->HSFB2a(2)                            <-----------RAV1(2)     ------>ZmHOX2a(2)    <-------- ---------HSFB2a(2)         <---------GLK1(2)--------->GLK1(2)--------->GLK1(2)   <-----------------AGL3   ttcgagatattcaaatcctccgtctctagagaatttcatatcaagagaatcaggcaagtgggcgattctctgatcccgagtcaaaccatttctggcttct  15121100                                                                           ----------->GT1                                                                           <------MYB83                                                                       <------MYB83                                                                       <------MYB46(1)                                                                     <--------P                                                                    <-------GAMYB                                                                   --------->MYB111(2)                                                                   --------->MYB55(2)                                                                   <---------MYB46(3)               <                                                                  <---------AtMYB61              <---                 <---------YAB1                                 <---------MYB46(3)            -------               --------->At4g35610                             <---------AtMYB61              <------               <---------At4g35610                             <---------DEAR3(1)             <------NtERF2              <---------YAB1                                   --------->ALFIN1        --------->CCA1(2)           --------->ARR14(2)                                <---------MYB46(3)       <---------ARR14(2)           <---------ARR14(2)                               <---------AtMYB61         --------->ARR14(2)       <-----------RAV1(2)                               <-----------RAV1(1)          --------->ARR11(3)      ------>ZmHOX2a(1) <---------GLK1(2)                <---------AtMYB61 <------MYB46(1)  <-------- -ANAC58   --------->GLK1(2)              <---------MYB46(3)<---------DEAR3(1)       <------ZmHOX2a(1) -ANAC58  <---------GLK1(2)              <---------AtMYB61  --------->ALFIN1      --------->CCA1(2)--   caagtctcctcaggttctgatgaatagattgtttgattttgcagtggtttctgtagtttgtggtggtggtggttggaaggtaagataggatatggcgcag  15121200                                                           --------->RAP2.6(2)                                                           --------->ANAC58                                                       --------->ALFIN1                                                       --------->ATERF1(1)                                                      --------->LBD16                                                     <---------ANAC58                                                     ====================MYC_MYB                                                     <---------ANAC58        --------->DEAR3(1)                                                     ==============================MYC_MYB                                                     ================================MYC_MYB                                                     <---------ANAC46        ------->GAMYB                                                     <---------bZIP60(2)    <------------AtMYB77                                                     <---------TGA1a        --------->DEAR3(2)                                                     <---------O2           <---------MYB55(2)                                                 --------->ATERF1(1)   --------->ANAC58                                                ------>NtERF2    ------->GAMYB                                                --------->ZAT2  <------------AtMYB77                                                <---------At4g35610    ------->GAMYB                                               --------->DEAR3(1)--------->ANAC58                                               <---------DEAR3(1)--------->ANAC46                                               --------->RAP2.3(2)xxxxxxxxxxxxxxxx>smallRNA(s)                                              --------->RAP2.3(1)--------->ANAC58                                             <---------ATERF1(1)--------->MYB46(3)    <---------ANAC58                                             --------->LBD16<---------At4g35610       <---------ANAC58                                             ------>NtERF2 --------->ANAC58 --------->MYB46(3)                                            <---------ALFIN1--------->At4g35610   <---------MYB52(1)               <-------GAMYB                --------->DEAR3(1)<xxxxxxxxxxxxxxxxsmallRNA(i)               ================================================MYC_MYB --------->ANAC58       <------ZmHOX2a(1)     --------->At4g35610<---------ATERF1(1)    --------->ANAC46   <------ZmHOX2a(1)   --------->DAG2       --------->ANAC46<------NtERF2   --------->ATERF1(1) -----------RAV1(2)  ==========================================bZIP_DOF--------->RAP2.6(2) ---ZmHOX2a(1)--------->MYB52(2)          ------>ZmHOX2a(1)--------->ANAC46<---------ATERF1(1)   ---- -->ATERF1(1) <---------MYB46(3)    <---------ICU4--------->DEAR3(1)  --------->MYB46(3) --------->REM1(2) -----RAV1(2) --------->MYB55(2)   <---------ATHB12------>NtERF2xxxxxxxxxxxxxxxx>smallRNA(s)     ---- -ANAC46 --------->At4g35610 <---------At4g35610--------->At4g35610   <------------AtMYB77   >>>>>>>> ------->At4g35610   ---------->DOF2--------->ATHB12 --------->O2--------->RAP2.6(2)  <---------ANAC46   gagcaggaaggagcggtcgttgagaaaggtgagccgaatgattcctccgccgctgccgtggccgcaaccgcaaccgcaaccgccgatagcgtgaagaaga  15121300                                                 ----------->TGA1                                                 ----------->HVH21                                        <---------ZAT6                                 <---------CCA1(1)                     --------->MYB52(2)<---------TOE2(3)           <----------DOF2      --------->ARR11(3)         <---------HSFB2a(2) ----->ANAC58        <---------MYB46(3)<---------TOE1(3)   <---------HSFC1(1) ----->ANAC58     <----------DOF2<---------RVE1(1)         --------->HSFC1(1)               --------- >TBF1 <---------GLK1(2)        <---------ARR11(3)         --------->HSFB2a(2)              <--------   agcaaaatggattcttttcgcgtttgtggaatgggatatttagggttagaggtgacgatttcgagaagagacttcaatacatctcaagggaagaagctac  15121400  Previous    Next  AGI:  At4g31070.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to EMB2758 (EMBRYO DEFECTIVE 2758) [Arabidopsis thaliana] (TAIR:AT4G33990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45490.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 15118702    to: 15120543    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g31075.1    Description:  pre-tRNA. tRNA-Arg (anticodon: TCT) Range:  from: 15120656    to: 15120728    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g31080.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66718.1); contains domain PTHR22166:SF1 (PTHR22166:SF1); contains domain PTHR22166 (PTHR22166) Range:  from: 15120894    to: 15123492    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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