Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------ARR11(3)                                                 --------->ARR11(3)                                                <---------GLK1(1)                                          --------->ALFIN1                                         <-------MYC4                                         ------->MYC3                                         <-------MYC3                                         <-------MYC2                           <---------ATHB12--------->REM1(2)                         ------>MYB83   <---------O2                         ------>MYB46(1)--------->O2                       <---------MYB55(2)------->MYC2                       --------->MYB46(3)------->MYC4                      --------->ANAC58  =================================bZIP_DOF                 <-----------GT1        <--------ABF1                                              --                --------->AHL20(2)      <---------ANAC46                                           <-            <---------AHL20(2)          --------->TGA1a                                           ---         ----------->GT1<---------ALFIN1<---------ANAC55(2)                           <--------------     <---------TOE2(3)--------->ANAC58  <---------TGA1a       <----------DOF2         <-------------- <----------DOF2<---------AHL20(2)      --------->ANAC55(2)   <---------DAG2  <---------ICU4    -----   cgactttaatgaagttaattaaacacccactcactgtaagacacgtgtagaaatcttctaaacccttttttgacaaaacatcatgtctctccattttgga  15074600                                                        <---------ATHB12                                                      --------->WOX13(1)                                                    <---------MYB52(1)      --------->ANAC58                              ------------>CBF                       ------>ZmHOX2a(1) --------->GT1                 ----------->GT1     --------->LBD16                      ------>MYB46(1) ---------ID1            ---------->DOF2           <-----------HVH21   <-----------GT1  ------>MYB83 -------->GT1          --------->AHL20(2)   <---------GLK1(2)  ------->TEIL    <---------CCA1(2) ---AGL1        <---------TOE2(3)         ------------>CBF    <-----------GT1  ------>ZmHOX2a(1)   -- ---AG--------->ANAC58 <---------AHL20(2)--------->TOE2(3) --------------->AtSPL8   -------->P   <--- ----->DOF2    ---------->DOF2 <----------ID1     --------->ANAC46 <----------DOF2 <-----------GT1 <-   aaggaaaaacgaaagattaaagaaattaaaagaaggaaaaaaaccacaatctccgtcaatctttgaacccttttctcgctcctatctaccatcctctctc  15074700                                                                                     <---------HSFB2a(2)                                                                                     --------->LBD16                                                                                     --------->HSFB2a(2)                                                                               <---------ARR14(2)                                                                               --------->ARR14(2)                                                                              ------>MYB46(1)                                                                              ------>MYB83                                                                            ------->GAMYB                                                                            --------->AtMYB61                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                         ------->GAMYB                                                               <---------DAG2 <---------CCA1(2)                                                       <---------DAG2   <---------MYB111(2) ------->AHL20(2)                                  --------->ANAC46     <---------MYB55(2) -------DOF2                                       <---------ALFIN1     <---------MYB111(1) ----------TBP                   ---------->DOF2 --------->ANAC46       --------->MYB46(3)          -   tttatatatcgactgtttcgccattagagtctattcaaagaagtcgaaaacacacacccttatggccttatctaacaaccaaatctccgagaattggaat  15074800                                                 ------>ZmHOX2a(2)                                                --------->CCA1(2)                                                <------ZmHOX2a(2)                                               --------->AGP1                                               <---------ARR14(2)                                               --------->ARR11(3)                                               --------->ARR14(2)                   <-----------GT1<---------TOE2(3)       ----------->GT1      <---------YAB1     <---------ARR11(3)     <------ZmHOX2a(2)      <---------AHL20(2)--------->GLK1(1)    --------->ARR11(3)<----------DOF2         <---------GLK1(1)    <---------ARR11(3)<---------DAG2         ----------->ARR10 --------->DOF2 --------->TOE2(3) <---------TOE1(3)        ---------->DOF2   ttgaaagatcagtgaatttcttaacttttttttattagggttttggagagatctgtgagaagaaagttgagttcttaatccatctaggtttttttgaatt  15074900                                                                        --------->ANAC58                                                                        --------->ANAC58                                                                   <-------MYC3                                                                   ------->MYC3                                                                   ------->PIF4                                                                   ------->MYC2                                                                   <-------MYC2                                                                   <-------MYC4                                                                   <-------PIF5                                                               <---------At4g35610                                                             <---------ZAT18                                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                   XXXXXXXXXXXXXXXXXXX>MIR156H                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   XXXXXXXXXXXXXXXXXXX>MIR157D                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                   xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                   *TSS      --------->ZAT18                                                   XXXXXXXXXXXXXXXXXXX>MIR156G                                                   xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   XXXXXXXXXXXXXXXXXXX>MIR156A-F  <---------ANAC55(1)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)                 -                                --------->ANAC58  XXXXXXXXXXXXXXXXXXXX>MIR157A-C  <---------ANAC46<--                                --------->ANAC58  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              <--                             <------ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <--                       <------------CBF           xxxxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxx                     <---------YAB1----------->RAV1(1)xxxxxxxxxxxxxxxx>smallRNA(se3)          <------   --------------->AGL15   <---------TOE2(3)     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC55(2)   <---------HSFB2a(2)<---------MYB46(3)        --------->MYB52(1) <-------PIF4   --------->ANAC55(2)   --------->HSFB2a(2)--------->ATHB12------->GAMYBxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxx   <---------------AGL15<---------WOX13(1)     ----------->HVH21   ------->PIF5<---------MYB52(1) <--   agttgctagaagagggagagatggtgattgaggaatgcaacagagaaaactgacagaagagagtgagcacatgcaggcactgttatgtgtctataacttt  15075000           xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxx>smallRNA(s)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxx>smallRNA(i)          xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------At4g35610       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->At4g35610     <---------ZAT18     --------->ZAT18             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ANAC58           <---------ANAC58 *TSS    <---------ANAC58       <-------GAMYB        <---------WRKY18(1) -------->ALFIN1           <---------At4g35610<----------DOF2 -------ANAC55(1)          --------->At4g35610<---------WOX13(1) -------ANAC58            --------->MYB52(2) <---------ANAC58 -------ANAC58         <-----------HVH21------>NtERF2 xxxxxxxxxxx>smallRNA(s)<---------MYB52(1)   <---------ANAC58                                 <------ ----DOF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ZAT2                        <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC58----------->HVH21                  <---------ANAC46 -------ANAC46    <----------DOF2<---------CCA1(2)                                <---------ANAC58<--   gcgtgtgcgtgctcacctctctttctgtcagttgcctatctctgcctgcttgacctctctctctctctctctctctcaaatttggcttagacatttcttt  15075100                                                                             <---------AHL20(2)                                                                          <--------ATHB1                                                                          -------->HAHB4                                                                          <--------HAHB4                                                                          --------->ATHB51                                                                          <---------ICU4                                      <---------ANAC58                    --------->ATHB12                                 <---------DAG2                           --------->YAB1                                 <----------DOF2                         --------->ICU4                             <---------ZAT18                             <---------ATHB51                             --------->ZAT14                             --------->AHL20(2)                             <---------ZAT14                             <---------YAB1                          <---------ANAC46                             --------->YAB1                         <---------MYB52(1)       <---------ARR14(2)  <---------YAB1                        <-------GAMYB <---------ANAC58        <---------ANAC58    ------>ZmHOX2a(2)  <---------MYB46(3)      <---------ANAC46     --------->YAB1 <---------ANAC58 ----DOF2              <-----------RAV1(1)   <---------ANAC46 <---------ANAC58     <---------ANAC46 --------DOF2 --------->YAB1 --------->ZAT18 <---------bZIP60(2)   <---------YAB1  <---------ANAC58 <   ctttgatcgcttcttatcatctcgtctgttgtgcacttttgctagtgatgtgtatatgacaaatgcgttttgataataattagttgtgtgtttttctatg  15075200                      --------->ANAC58                      --------->ANAC58                  <---------ANAC58              <---------ANAC58                                          --------->CCA1(2)              <---------ANAC58                                  <---------ANAC46             <---------MYB46(3)                                 <------MYB46(1)           <---------PCF2                                       <------MYB83          <---------ANAC58                                     <---------MYB46(3)          <---------ANAC58                                     --------->MYB111(1)          <------MYB46(1)                                      --------->MYB111(2)            <------          <------MYB83<---------ANAC46                 --------->HSFB2a(2)                    -------         <---------MYB46(3)                    <----------DOF2 --------->MYB46(2)             <------MYB46(1)        --------->ALFIN1                   <---------TOE2(3)   --------->MYB55(2)            --------      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------TOE1(3)   <---------AtMYB61  --------->GLK1(1) < ---------ANAC46  <---------ANAC58     <----------DOF2 <---------HSFB2a(2) --------->At4g35610<------MYB83   ttatgtggaagtgggtgcttgcttacgcataagaatgtttgttttaaggctttttttttagaagtttggtggagataagctcagatttctatagttgggt  15075300                                                                                                 ----       --------->YAB1          --------->At4g35610                                               ----      --------------->AGL15    <---------At4g35610                                               ----      <---------------AGL15  --------->ZAT18                                               ------->TEIL    --------->YAB1        <---------ANAC55(1)                                         <---------ICU4   --------->ZAT6         <---------ANAC46                                            --------->YAB1 --------->YAB1      <------MYB83<----------DOF2                                     <---------YAB1 ---ANAC46           <------MYB46(1)                              ---------->DOF2   <---------ARR11(3) ---->GT1 <---------AHL20(2) <---------ZAT14               <------ZmHOX2a(2)        --------->ARR11(3) ->MYB59 --------->AHL20(2)  --------->ZAT14           <---------ZAT18             --------->YAB1---- ---------YAB1      --------->MYB59   --------->ICU4   --------->ZAT18            <---------YAB1<----   ttataatactaataaatgtaatttggttaagtgtgctgtaatgttgaattcttctagtgcgatctagggaaagcgcgagttttgatgatcatgaacccca  15075400                                                                        ---------->DOF2                                                    ---------->ID1  ------>ZmHOX2a(1)   <---------ZAT18                       <---------WOX13(1)        <---------------AGL15   <-------TEIL                       <---------AHL20(2)           --------->TOE2(3) -->MYB46(1)          <---------AHL20(2)<---------ANAC58           --------------->AGL15 ---->P<---------GLK1(2)   <-----------GT1      <----------DOF2   ----------------->AGL3 -->MYB83             --------->AHL20(2)<---------ANAC58         ---------->ID1                   <-- ----->MYB52(1)      --------->AHL20(2)--------->ATHB12         <-----------GT1             --------- -----ALFIN1       <---------ARR11(3)<---------WOX13(1)    <---------AHL20(2)   <-----------GT1   ---   accggtacacattcttctcaagatttaattttctatctaattgattgtctctttgtctcatttttttttccttataaagttttttcatgttgaaattctc  15075500  Previous    Next  AGI:  At4g30970.1    Description:  unknown protein Range:  from: 15069272    to: 15074594    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g30972.1    Description:  MIR156B; miRNA Range:  from: 15074951    to: 15075030    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g30975.1    Description:  other RNA Range:  from: 15075048    to: 15077578    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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