Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           <---------ANAC58                                         <---------ANAC58                                      <----------DOF2                                      ------>ZmHOX2a(1)                                     <---------------AGL15                                    ----------------->AGL1                                    <-----------------AG                <-----------GT1 <---------MYB52(1)        --------->TOE2(3)        <---------GLK1(2)    ------>ZmHOX2a(2)          -------->P                    ------>NtERF2    --------->TOE2(3)        ================HOX2a_HOX2a------->TEIL                  ----------->RAV1(1)   ------>ZmHOX2a(2)       --------->ARR11(3)      --------->YAB1<---------YAB1     --------->MYB46(3) ------DOF2 <----------DOF2<---------ARR11(3)     <---------ATHB12         ------>NtERF2           <-   tttgatccttgattcttttttcgctccatgatctgttatcctttcttggtaaatcatcaacctcattttcattttgcagccaagtagccaccagaagtaa  15074200                                        --------->ZAT14                                        <---------ZAT18               --------->ANAC55(2)   <------MYB46(1)               <---------ANAC55(2)   <------MYB83               --------->ANAC58      <---------MYB46(3)     <-------TEIL           --------->TOE2(3)     <---------AHL20(2) <---------YAB1--------->ANAC58  <-----------RAV1(1)                      <---------WOX13(1)        < ---------DOF2 ----------->GT1  <---------YAB1   --------->AHL20(2)  <----------DOF2              ---   actttgattcattcgataagtaatacaaaacgttattgttggttcactctataaaatcgaatcaaactaaactttgatttatacgctcatgcctacttcc  15074300              <----------DOF2        <-----------GT1                                        <-----------HVH21      <---------ANAC58     --------->LBD16                     --------->LBD16      <---------ANAC58    --------->ANAC46               ------>ZmHOX2a(1) <--------HAHB4           ------->GAMYB              <---------ARR14(2)                   --------->TOE2(3) --------->YAB1           --------->RAP2.6(2)        <---------ARR11(3)     <---------ANAC58 --------->ATHB12        --------->MYB46(3)          --------->ARR14(2)     <---------ANAC58 <---------ICU4         <---------At5g28300         <---------CCA1(2)  <----------DOF2    --------->YAB1 ---------ATHB12       <---------ARR14(2)        --------->TOE2(3)    <---------DAG2--------->GLK1(2) ------>WOX13(1)       --------->ARR14(2)--------->TOE2(3)  ------>ZmHOX2a(1)   --------->HSFB2a(2)   caatcatttcttacctctttcactgtaaccgcaaaaacaaaaacattaaaacctatatcctcctccgtcaaaccttttgcttacagaatcaatgttaaat  15074400                                                                                   --------->DEAR3(1)                                                                                   <---------ALFIN1                                                                                  <------NtERF2                                                                                 ------>NtERF2                                                                                --------->ANAC46                                                                                --------->ANAC58                                                                  <---------DEAR3(1)                                                                 --------->At4g35610 <---------ALFIN1                                                                 <---------At4g35610------>NtERF2                               --------->ATHB12                  <------NtERF2  --------->ANAC58                              <---------YAB1                     <---------ZAT2<-------MYC2                              <---------AHL20(2)                 <-------GAMYB ------->MYC2                     <---------AGP1                             <---------DEAR3(2)--------->ATERF1(1)              ---------->DOF2 --------->AHL20(2)                ------>NtERF2  <-------MYC3        <------ZmHOX2a(1)     --------->AHL20(1)               <---------DEAR3(1)<---------ATERF1(1)       ----------->GT1       --------->AHL20(2)   <---------ANAC55(2)          ------->MYC3  <---------AHL20(2)<------MYB83                  --------->ANAC55(2)         --------->ANAC58  --------->AHL20(2)<------MYB46(1)        ----------->GT1   <-----------HVH21--------->ANAC58 --------->AHL20(2)--------->MYB59       <-------TEIL   <---------AHL20(2)    --------->ANAC46   caaattaataggaaataaaagtaggtctgaattttattggacatacagtattaagtattttttcgtcggctgtgttacacacgcgccaccctctgaaacc  15074500                                                 --------->ARR11(3)                                                 <---------ARR11(3)                                                <---------GLK1(1)                                          --------->ALFIN1                                         ------->MYC4                                         ------->MYC2                                         <-------MYC4                                         <-------MYC3                           <---------ATHB12--------->REM1(2)                         ------>MYB83   --------->ANAC55(2)                         ------>MYB46(1)=================================bZIP_DOF                       <---------MYB55(2)<-------MYC2                       --------->MYB46(3)------->MYC3                      --------->ANAC58  <---------ANAC55(2)                 <-----------GT1        <---------TGA1a                <---------AHL20(2)      <---------ANAC46                                           --            <---------AHL20(2)          <--------ABF1                                              <-         ----------->GT1<---------ALFIN1--------->O2                                              ---     <---------TOE2(3)--------->ANAC58  <---------O2                                  <-------------- <----------DOF2--------->AHL20(2)      --------->TGA1a       <----------DOF2         <-------------- =================================================bZIP_DOF    <---------DAG2  <---------ICU4    -----   cgactttaatgaagttaattaaacacccactcactgtaagacacgtgtagaaatcttctaaacccttttttgacaaaacatcatgtctctccattttgga  15074600                                                        <---------ATHB12                                                      --------->WOX13(1)                                                    ------------>CBF      --------->ANAC58                              <---------MYB52(1)                     ------>ZmHOX2a(1) --------->GT1                 <----------ID1      <-----------HVH21                    ------>MYB83 ---------ID1            ---------->DOF2           --------->LBD16     <-----------GT1  ------>MYB46(1) -------->GT1          --------->AHL20(2)   <---------GLK1(2)  ------->TEIL    ------>ZmHOX2a(1) ---AG--------->ANAC58 <---------AHL20(2) ------------>CBF    <-----------GT1  <---------CCA1(2)   <- ---AGL1        <---------TOE2(3)        --------->TOE2(3) --------------->AtSPL8   -------->P   <--- ----->DOF2    ---------->DOF2 ----------->GT1    --------->ANAC46 <----------DOF2 <-----------GT1 --   aaggaaaaacgaaagattaaagaaattaaaagaaggaaaaaaaccacaatctccgtcaatctttgaacccttttctcgctcctatctaccatcctctctc  15074700                                                                                     --------->HSFB2a(2)                                                                                     <---------HSFB2a(2)                                                                                     --------->LBD16                                                                               <---------ARR14(2)                                                                               --------->ARR14(2)                                                                              ------>MYB46(1)                                                                              ------>MYB83                                                                            ------->GAMYB                                                                            --------->AtMYB61                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                         ------->GAMYB                                                               <---------DAG2 <---------CCA1(2)                                                       <---------DAG2   --------->MYB46(3) ----------TBP                                     --------->ANAC46     <---------MYB111(1) -------DOF2                                       <---------ALFIN1     <---------MYB111(2) ------->AHL20(2)                ---------->DOF2 --------->ANAC46       <---------MYB55(2)          -   tttatatatcgactgtttcgccattagagtctattcaaagaagtcgaaaacacacacccttatggccttatctaacaaccaaatctccgagaattggaat  15074800                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                                --------->CCA1(2)                                               --------->AGP1                                               <---------ARR11(3)                                               --------->ARR11(3)                                               <---------ARR14(2)                   <-----------GT1<---------TOE2(3)       ----------->GT1      <---------AHL20(2) --------->ARR14(2)     <------ZmHOX2a(2)      <---------YAB1    <---------GLK1(1)    --------->ARR11(3)<----------DOF2         --------->GLK1(1)    <---------ARR11(3)<---------DAG2         ----------->ARR10 --------->DOF2 --------->TOE2(3) <---------TOE1(3)        ---------->DOF2   ttgaaagatcagtgaatttcttaacttttttttattagggttttggagagatctgtgagaagaaagttgagttcttaatccatctaggtttttttgaatt  15074900                                                                        --------->ANAC58                                                                        --------->ANAC58                                                                   <-------MYC3                                                                   <-------PIF5                                                                   <-------PIF4                                                                   ------->PIF4                                                                   ------->MYC2                                                                   <-------MYC4                                                                   <-------MYC2                                                               <---------At4g35610                                                             --------->ZAT18                                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                    xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   XXXXXXXXXXXXXXXXXXX>MIR157D                                                   *TSS      <---------ZAT18                                                   xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                   XXXXXXXXXXXXXXXXXXX>MIR156A-F                                                   XXXXXXXXXXXXXXXXXXX>MIR156G                      -                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                   <--                                --------->ANAC58  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <--                                --------->ANAC58  XXXXXXXXXXXXXXXXXXXX>MIR157A-C  <---------ANAC46<--                             <------ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxx                       <------------CBF           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <------                     <---------YAB1----------->RAV1(1)xxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxx   --------->HSFB2a(2)<---------MYB46(3)         xxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ANAC55(2)   <---------------AGL15   <---------TOE2(3)    --------->MYB52(1) ------->MYC3   <---------ANAC55(1)   --------------->AGL15<---------WOX13(1)     ----------->HVH21   ------->PIF5   <---------ANAC55(2)   <---------HSFB2a(2)--------->ATHB12------->GAMYBXXXXXXXXXXXXXXXXXXX>MIR156H <---------MYB52(1) <--   agttgctagaagagggagagatggtgattgaggaatgcaacagagaaaactgacagaagagagtgagcacatgcaggcactgttatgtgtctataacttt  15075000           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxx>smallRNA(s)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxx>smallRNA(i)          xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------At4g35610       --------->At4g35610       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------ZAT18     --------->ZAT18             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ANAC58           <---------ANAC58 *TSS    <---------ANAC58       <---------At4g35610  <---------WRKY18(1) -------->ALFIN1           --------->At4g35610<----------DOF2 -------ANAC55(1)          <-------GAMYB     <---------ANAC58 -------ANAC58            --------->MYB52(2) <---------ANAC58 -------ANAC46         <-----------HVH21------>NtERF2 xxxxxxxxxxx>smallRNA(s)<---------MYB52(1)  <---------ZAT2                                    <------ ----DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------WOX13(1)                  <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC58----------->HVH21                  <---------ANAC46 -------ANAC58    <----------DOF2<---------CCA1(2)                                <---------ANAC58<--   gcgtgtgcgtgctcacctctctttctgtcagttgcctatctctgcctgcttgacctctctctctctctctctctctcaaatttggcttagacatttcttt  15075100  Previous    Next  AGI:  At4g30970.1    Description:  unknown protein Range:  from: 15069272    to: 15074594    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g30972.1    Description:  MIR156B; miRNA Range:  from: 15074951    to: 15075030    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g30975.1    Description:  other RNA Range:  from: 15075048    to: 15077578    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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