Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                               --------->LBD16                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               --------->ANAC58                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    --------->YAB1                                   <---------ATHB12                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 --------->ANAC46                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <-----------GT1  <---------LBD16                           <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxsmallRNA(s)                      <xxxxxxxxxxxxxxxxsmallRNA(i)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <xxxxxxxxxxxxxxxxsmallRNA(s)                     <xxxxxxxxxxxxxxxxsmallRNA(s)    --------->ANAC46                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->MYB46(3)                     --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    --------->MYB46(3)<xxxxxxxxxxxxxxxxsmallRNA(s)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58                    <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ANAC58                   <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ANAC46                   xxxxxxxxxxxxxxxx>smallRNA(i)--------->ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(i)                 <---------ALFIN1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ANAC58                xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC58                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(s)               --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)---------->DOF2             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------YAB1 <xxxxxxxxxxxxxxxxsmallRNA(s)  ------->TEIL         <-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(s)   --------->MYB46(3)     <---------AHL20(2)<---------MYB52(1)    xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(s)<-------TEIL  <xxxxxxxxxxxxxx     --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ------ ------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->LBD16 <---------YAB1   <---------MYB46(3)   tttttgtttaattactatcacacccgctggtttaccagtcataaaactcccgcaaacgcacccattatcaaacgttcaaccagtcgttcaaaacgtttga  15066700                                                --------->ANAC46                                                ------->GAMYB                                             --------->MYB52(1)                                             --------->ARR14(2)                                             <---------ARR14(2)                                          --------->YAB1                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           --------->LBD16--------->AtMYB61                          --------->ANAC46--------->TOE1(3)                         <---------LBD16  --------->TOE2(3)                         <xxxxxxxxxxxxxxxxsmallRNA(s)                       --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------ARR14(2)--------->MYB46(3)                                         -                --------->ANAC58     --------->LBD16                                        <--------                --------->DEAR3(1)  --------->ANAC58                                --------->AHL20(1)                --------->ANAC58    <---------HSFB2a(2)                             <---------AHL20(2)                --------->DREB2C(2) --------->ANAC58           <---------AHL20(2)   --------->AHL20(2)                ------->GAMYB  --------->HSFC1(2)     --------->ANAC46  --------->SPL7     <---------ATHB12                --------->ANAC46<xxxxxxxxxxxxxxxxsmallRNA(s)   --------->AHL20(2)  <---------AHL20(2)               <------------AtMYB77 --------->HSFB2a(2)--------->LBD16<-----------HVH21 <---------AHL20(2)               --------->DEAR3(2)   --------->ANAC55(2)--------->At4g35610         --------->AHL20(2)  xxxxxxxxxxxxxxxx>smallRNA(s) <---------HSFC1(2)  --------->PCF2     <-----------TGA1  --------->AHL20(2) xxsmallRNA(i) --------->MYB46(3)   --------->ANAC46 --------->MYB46(3)<---------MYB52(1)--------->WOX13(1) --->YAB1      <---------MYB55(2)  <---------LBD16<---------ALFIN1   --------->ANAC46  --------->AHL20(2)   taacgcttgaaactgcaaccgccagtttccgcaaacttccgcaaccataaccgcacccgctgcattttaatccgtcaggccctaaaaaaattaatcacta  15066800                                                                                   <-----------HVH21                                                                                   <-----------TGA1                                                                                  --------->TGA2(1)                                                                                  <---------TGA2(1)                                                                                  --------->bZIP60(1)                                                                                  <---------bZIP60(1)                                                                              ------->MYC4                                                                              <-------MYC3                                                                              ------->MYC2                                                                              <-------MYC2                          --------->ZAT6                                      ------->MYC3                     <---------ANAC55(2)                                      <-------MYC4                     --------->ANAC55(2)                                      -------->ABF1              --------->TOE2(3)                                              --------->ANAC55(2)    -              <---------ANAC55(2)                                            --------->O2           -              --------->ANAC46                                               <--------ABF1          <           --------->ARR14(2)                                                <---------O2           -  <---------MYB52(1) --------->ANAC58                                        <---------ANAC55(2)    < --------->At5g28300 --------->ANAC46                                 ---------->DOF2              <- <---------RAP2.6(3) --------->ANAC58                                 =================bZIP_DOF    <- <-------GAMYB--------->ANAC55(2)                       <-----------HVH21    <---------TGA1a       -- ---------->GT1--------->LBD16             ----------->GT1     <-----------HVH21  <---------ANAC46 -- -ICU4     <---------ARR14(2)              --------->YAB1----------->HVH21   --------->TGA1a       <-   ggccgttaatccctatccgtaatacgaaacactagagggatagaatagtaaatcgcatcgtgaccggtcataaaaagacacgtgtcgtcatcgctatcca  15066900                            <---------GLK1(1)      --------->At4g35610                            --------->GLK1(1)      <------NtERF2                   ------>NtERF2                   <---------At4g35610               <---------------AGL15  <---------WOX13(1)<------NtERF2                <---------WRKY12                    --------------->AGL15 ------->HAHB4     <---------RAP2.6(3)           <---------WRKY38(1)                ----------------- -------->ATHB51  --------->ANAC46             <-----------HVH21                    <---------------- --------ATHB1    --------->RAP2.6(2)         --------->WOX13(1)                    ----------------- -------->ATHB12  --------->DEAR3(1)       <-----------HVH21                   --------->ZAT6 ---------ICU4    --------->RAP2.3(2)     --------->TGA1a                      <-----------GT1  <---- --------ATHB12   --------->RAP2.3(3)     =======================bZIP_DOF     <---------YAB1    ----- --------ATHB51  --------->ATERF1(1)     <-------MYC3                  --------->ZAT14          <---- ------->AHL20(2)--------->ERF1          ------->MYC3                  <---------ZAT14--------------- ------->ICU4   <---------ATERF1(1)     --------->O2        ----------->GT1--------->ICU4      ------ --------AHL20(2)--------->RAP2.3(1)    <---------O2  ---------->DOF2 --------->ALFIN1<--------------   aataattgacaaactcgaagccgccaagggattgccgaagacacatgtcagtcagcgaaaggaggttaaacggtgtagttatcactccctaataagggta  15067000 --------->ANAC58 --------->ANAC46 <---------ANAC55(2) --------->ANAC55(2)             --------->ZAT6 --------->ANAC58            <---------AHL20(2)              <---------ATERF1(2)         <----------DOF2 >AG                       ----------->TBP                   --------->ATERF1(2)         --------->TOE2(3) -AG <------------CBF  <------ZmHOX2a(2)                    --------->SPL7               --------->TOE1(3) >AGL3                --------->AGP1                        --------->RAP2.6(3) <---------ARR11(3) -----ARR14(2)        --------->ARR11(3)                   *TSS   ---------->DOF2<---------RVE1(1) ---->ARR14(2)        <---------ARR11(3)          <---------ARR11(3)            --------->ARR11(3) -------ARR10         <---------AGP1          <---------ANAC58 <------NtERF2    <---------GLK1(2) >AGL15          <---------MYB52(1)      <----------DOF2  ----------->HVH21   <---------TOE2(3) --->GLK1(1)   <---------ANAC46<-----------GT1<---------ANAC58------>NtERF2   <---------YAB1 -AGL15 ------------>CBF------>ZmHOX2a(2)<XXXXXXXXXXXXXXXXXXXXMIR2937----------->GT1  <-----------GT1   tctacgtaattgcaatgtcgttaagatctatataaacactactcttttgctagctcttatccgacggcaaaaggagaattaagatttttaactttaaacg  15067100                                                                 --------------->AGL15                                                                --------->TOE2(2)                                                            --------->RVE1(1)                                                    --------->LBD16            <-----------GT1                        --------->HSFB2a(2)                           <---        --------->AHL20(2)                         <---------LBD16                               ----      <---------MYB52(1)         <---------GLK1(1) <---------HSFB2a(2)                       <------NtERF2    <---------ANAC58             --------->GLK1(1)<---------ANAC46    --------->MYB52(1)   <---------DEAR3(1)    <---------ANAC58          --------->HSFB2a(2) <---------LBD16------>ZmHOX2a(1)         --------->ETT(1)    <---------ANAC46    <-----------GT1          <---------LBD16--------->TOE2(3)      <---------AtMYB61   agagtttcgtttatttactcaaaaatttacttctgaaatctctatttgaatttcggggaaaaaaatcctaagtaagggaatgcagagagatggtcggagt  15067200                                                     <---------GLK1(1)                                                    --------->ARR14(2)                                                   <------ZmHOX2a(1)                                                <-----------RAV1(2)                                               <------NtERF2                                              <---------DEAR3(2)                                              ----------->RAV1(1)                                              ------>NtERF2                                             <---------ATERF1(2)                                             --------->ATERF1(2)                                             <---------RAP2.6(2)                                             <---------RAP2.3(2)                                             <---------DEAR3(1)                                            --------->At4g35610                                            <------NtERF2                                            --------->ATERF1(1)                                            <---------At4g35610                                            <---------LBD16                                           <---------ATERF1(1)                                           ------>NtERF2                                           <---------RAP2.3(1)                                           <---------RRTF1(1)                                           <---------ERF1                                           <---------DEAR3(2)                                           <---------ORA47(2)                                          <---------DEAR3(1)                                          <---------RAP2.3(3)                                          <---------At1g77200               =================HOX2a_HOX2a                                         <---------MYB52(1)           <-----------HVH21                                        <-----------HVH21       <---------ARR14(2)                          ----------->GT1--------->ATERF1(1)    --------->ARR14(2)                         ------>ZmHOX2a(2)<---------DREB2C(2) --------->LBD16               <---------At4g35610    ====================HOX2a_HOX2a--------->O2               --------->ZAT2        <------ZmHOX2a(2)      <------NtERF2   <------ZmHOX2a(1)   --------->LBD16       =================================HOX2a_HOX2a<---------O2 ----------->HVH21  <---------DEAR3(1) ----------->HVH21------>ZmHOX2a(2)     <---------LBD16----------->HVH21 <---------------------WRI1          =====================HOX2a_HOX2a--------->ANAC46 <---------LBD16   <---------ANAC46 <---------ARR14(2)     ------>NtERF2 --------->HSFB2a(2) ------ARR14(2)--------->At4g35610  --------->ARR14(2)     --------->MYB52(1)  <---------MYB46(3) ----->ARR14(2)<---------ZAT2  <-----------GT1<---------RAP2.3(1)  <---------ALFIN1   ------>ZmHOX2a(2)   atcgccggtgaagactaagctgtgtgatcggtttaaccgatccgtcggcggcaggaattgccaccggaaacacgtcgaggacgggtgatccagttttcta  15067300                                         --------->ARR11(3)                                         <---------ARR11(3)                                        <---------CCA1(2)                                     --------->At5g28300                                    ----------->GT1                         --------->GLK1(1)                                        <---------YAB1                         --------->CCA1(2)                                      <---------ICU4         --------->HSFB2a(2)----------->GT1                           <---------GLK1(2)  ---------->DOF2     <---------CCA1(2)  <---------ARR11(3)                      <-----------GT1 --------->YAB1   --------->TGA1a      --------->ARR11(3)                 <----------DOF2     <---------ATHB12   --------->O2         <---------ARR14(2)  <----------DOF2<---------DAG2    --------->YAB1----------   aactctcgtctctcgaattcttcgaagatatcgaaaaactgtaaatcttttttttcttctacttttttacaaaattctctaatcatcgttgtaaagtaaa  15067400                                                                            --------->ZAT2                                         --------->MYB55(2)                 --------->STY1(2)    ----                                         <---------MYB46(3)              <---------ANAC58        <---                                        --------->ALFIN1                 <---------ANAC58        ----                                        <---------AtMYB61             <---------MYB52(1)         ----                                     <---------DEAR3(1)              <-------GAMYB               ----                                   --------->MYB52(1)                <---------RAP2.6(3)         ----                                  ----------->HVH21                <---------------------WRI1   <----                                --------->At4g35610          <---------REM1(2)                 ------                                <---------At4g35610         <----------DOF2 <---------ZAT2    -------                     --------->ALFIN1<---------DREB2C(2)    <-----------HVH21               ---------               --------->ARR14(2) ----------->TGA1        <---------At4g35610             --------->HSFB2a(2)               <---------ARR14(2)------>ZmHOX2a(2)        --------->At4g35610        <------NtERF2         <------NtERF2         <---------ARR14(2)      <---------At4g35610  <---------STY1(2)<-------       <---------DEAR3(1)      ------->TEIL     <---------SPL7  --------->ANAC46   <---------ANAC58     <-----------HVH21         --------->ARR14(2) <---------LBD16--------->DEAR3(1)<---------ANAC58 ->GT1 --------->ETT(1)        <---------AGP1 <---------------AtSPL8<---------MYB46(3)    <---------HSFB2a(2)   aaaccatggtcggagcaaaaccggtggagaatggatctgacggtggtagtagtacggggctgcttcacggccgttacgagctagggcgtcttctaggtca  15067500       <---------HSFB2a(2)       --------->HSFB2a(2)   --------->KAN4(2)  <---------HSFB2a(1)  --------->HSFB2a(1)  --------->HSFC1(2)  <---------HSFC1(2)  <---------KAN4(1)  --------->KAN4(1) <---------KAN4(2) ----->ANAC46                                       <------NtERF2 ------ANAC55(2)                                  <---------DEAR3(1) ----->ANAC58            --------->ANAC58         --------->ALFIN1 ----->ANAC55(1)         --------->ANAC58       <---------ANAC58 ----->ANAC55(2)     --------->ANAC58           <---------ANAC58                               <----- ----->ANAC58        --------->ANAC58        --------->DAG2                      ----------->GT1  <-- -----LBD16        <---------ALFIN1         ---------->DOF2                  --------->DAG2    <----- --->MYB52(1) --------->ALFIN1          --------->LBD16          <------NtERF2  --------->ALFIN1----- ---->HVH21   <---------REM1(1)        ----------->GT1           <---------------------WRI1<------MYB83 >ANAC46     <---------------AtSPL8   <---------LBD16<---------ANAC46 ---------->DOF2---------->DOF2 ----HVH21 <---------AtMYB61         --------->MYB52(1)   ---------->DOF2   ---------->DOF2<------MYB46(1)   cggaacattcgcgaaggtgtaccacgctcgtaacatacaaaccggaaaaagcgtggcgatgaaagtcgtcggaaaagagaaagtggtgaaagttggtatg  15067600  Previous    Next  AGI:  At4g30960.1    Description:  CIPK6 (CBL-INTERACTING PROTEIN KINASE 6); kinase. similar to CIPK20 (CBL-INTERACTING PROTEIN KINASE 20), kinase [Arabidopsis thaliana] (TAIR:AT5G45820.1); similar to CBL-interacting protein kinase [Brassica napus] (GB:AAL37170.1); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 15067059    to: 15069016    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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