Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->DEAR3(1)                                                                             --------->ARR14(2)                                                                             <---------ARR14(2)  <---                                                                     --------->TOE2(1)--------->LBD16                                                                     --------->TOE1(1)------>NtERF2                                                                    --------------->AtSPL8       <---                                                                <---------ALFIN1     --------->ANAC46                                                              <-----------HVH21    <---------ATERF1(1)                                                          --------->PCF2------->TEIL <---------ALFIN1 >O2                                        --------->LBD16 --------->MYB46(3)     ------>ZmHOX2a(1) -O2                <-------TEIL ---------->DOF2         <------ZmHOX2a(1)  <---------CCA1(2) <------   cctgaacaatggcaaacactggttcatagggtttgaaaagtctctccgaaggtttaagaggacccatcaccttgtaccctatctcctccgcctcttccac  15051300                <-----------GT1              --------->KAN4(2)                 ---------->DOF2             <----------TaMYB80               ------>ZmHOX2a(1)        --------->At5g28300                  --------->TOE2(3)       ----------->GT1                    <---------ARR14(2)       --------->LBD16                    --------->ARR14(2)      <---------DEAR3(1)                  <---------ARR11(1)      --------->DEAR3(1)               --------->DEAR3(1)      --------->ATERF1(2)            ------>NtERF2    --------->LBD16                  --------->LBD16    ------>NtERF2                    --------->At4g35610                 <---------YAB1   --------->DEAR3(1)               --------->ANAC46                   <---------ICU4   --------->ANAC46              --------->ARR14(2)                    --------->YAB1       <--------  <---------LBD16   <----------DOF2--------->MYB46(3)              ------>ZmHOX2a(1) <---------ZAT14 ------DAG2  <---------KAN4(1)   <---------ARR14(2)             ------>ZmHOX2a(1)   <-----------HVH21 -------DOF2 --------->KAN4(1)  <---------GLK1(1)              <---------ALFIN1     ------>ZmHOX2a(1) ---ALFIN1  <---------KAN4(2)   <---------CCA1(2)           <---------ALFIN1   ------>ZmHOX2a(1)   tttctccgccggtgaatattccctttctacttccatatccgccgaatcctcaaagtcttccccctcctcctcatcatcatcctctccttcactgctttct  15051400               ------>ZmHOX2a(1)        ------>ZmHOX2a(2)               <----------DOF2         <------ZmHOX2a(2)               ================================HOX2a_HOX2a               ===============================HOX2a_HOX2a              --------->TOE2(3)       --------->ARR11(3)           <---------ARR14(2)         <---------ARR11(3)                                 <------ZmHOX2a(2)           --------->ARR14(2)        ------->GAMYB                                <---------ZAT6           <---------ARR11(3)     --------->MYB52(1)          <---------ZAT14  ------>ZmHOX2a(1) --DOF2<---------ICU4       ----------->GT1              <---------ATHB12      =================HOX2a_HOX2a   tcatcttcatcagtatcctttgtgttcgaagagaaacaacgatcttgagagcgataccaatgactgtaccatggcaaattcctagtgagagatcgattcg  15051500                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                        <---------MYB46(3)       ----                                                                       <---------WOX13(1)       <----      --------->PCF2        --------->LBD16                            <--------P               -----      <---------TCP20      <---------HSFB2a(2)                  <---------ANAC58               <-----     <-----------HVH21     --------->HSFB2a(2)                  <---------ANAC46              <------  <---------At5g28300      --------->LBD16                      <---------ANAC58             <------- --------->MYB52(1)       <---------LBD16                     ------>ZmHOX2a(2)              <------- <-----------GT1        --------->PCF5                   <------ZmHOX2a(2)                   <-------   gaattacggtcccatgagaaatgctggtcccggaaaactcaatcccatgaaatgaagagatcgatcgcgtctggttgatggagaaaacagtcgtagcgcg  15051600     --------->ZAT2     <---------ZAT2     <---------At4g35610     --------->At4g35610 ------NtERF2 ---------At4g35610 -------->ATERF1(1) -------->At4g35610 --------MYB46(3) --------ATERF1(1) ---->NtERF2 --------ERF1 --------DEAR3(2) --------RAP2.3(1) -------RAP2.3(2) ------>DEAR3(1) -------RAP2.6(2) -------DEAR3(1) -------RAP2.3(3) ----->RAP2.3(1) ----->DEAR4(2) ---NtERF2 ----->ATERF1(1) -->NtERF2 -----ATERF1(1) ---->DEAR3(1)--------->ANAC58            --------->ANAC58                ---------->DOF2 ----DEAR3(1) --------->ANAC58            --------->ANAC58        --------->ZAT14 ---LBD16   ---------->DOF2            --------->ZAT18            <---------ZAT14 --ANAC58 --------->ANAC58 --------->ANAC46                   --------->ANAC46 --ANAC58 --------->ANAC46 --------->ANAC58                <---------REM1(2)                        - --ANAC46 --------->ANAC58 --------->ANAC58          <---------TOE2(3) *TSS                   <------   gcggctcagctcacgaaagcatcgaagactcgccatcggagagcacgaacacactagggtttacacagagtagagagaaagggtttttgttctcgtcttt  15051700                          <---------HSFB2a(2)                          --------->HSFB2a(2)                    <---------ARR11(3)                    --------->ARR11(3)                                                  <--------HAHB4                    --------->ARR14(2)                                                  <---------ICU4                <---------At4g35610                                  --------->YAB1     --------->ATHB12                --------->At4g35610                            <---------AHL20(2)       --------->YAB1    <----------DOF2 <---------ARR14(2)                        --------->AHL20(2)       <---------YAB1 --------->ID1<---------HSFB2a(2)                <---------------AGL15     --------->YAB1 ----DOF2     --------->HSFB2a(2)------->TEIL    --------------->AGL15------------>CBF --------->ICU4   tagtccctttcaagtttcagaagaccctctagacgaaccagaggctattcactaaaattagcgatttaatatcacaataaacatataccatcattacaca  15051800                                                   <---------AHL20(2)                                                  --------->AHL20(2)                                                 <---------YAB1                    <------MYB46(1)            --------->YAB1                    <------MYB83               <---------ICU4            ------->TEIL                      --------->ICU4         --------->ANAC55(2)                  <---------YAB1        <---------TOE1(3)                   <---------ICU4        <---------TOE2(3)                   --------->YAB1       <---------DOF5.7(2)                 <---------YAB1              ----------->GT1     --------->DOF5.7(2)  --------->YAB1<---------YAB1                <------NtERF2       --------->ZAT6  ------->TEIL <---------AHL20(2)       <---------AHL20(2)          <---------DEAR3(1)   ------->TEIL   gacgaatgttaacgtatttagttggtaatcttcatggggttttttattattattatataacaagaacaaggaggcgaaaattgagtcgatgaactctata  15051900                              --------->ATHB12                            <---------WOX13(1)               --------->ZAT2             ------>MYB83                           <---------ANAC58                  <---------At4g35610      --------->DEAR3(1)                           <---------ANAC46                  --------->At4g35610      --------->AtMYB61                           <---------ANAC58                  <---------ZAT2<----------DOF2                      <---------ICU4                ---------->DOF2        <---------DAG2       <----                   --------->YAB1     <---------ARR14(2)    XXXXXXXXXXXXXXXXXXX>MIR3434 ------>MYB46(1)               <---------AHL20(2)     --------->ARR14(2)   ------>ZmHOX2a(1)         --------->MYB46(3)   aaactcataaactacatataatcagcattgcttgatttcgaatccaatgctcaacaaagtcctagctgattccatcactttctctccaccaacgtccaat  15052000                                --------->DEAR3(1)                              ------>NtERF2<----------DOF2         ================HOX2a_HOX2a     --                            --------->MYB46(3)                     ------>ZmHOX2a(2)               <-                           --------->DEAR3(1)                  ----------->HVH21                  <--                          --------->PCF2  <---------ANAC58   <---------At4g35610                 <---                          --------->ANAC46<---------ANAC46   --------->At4g35610         <-----------RAV1(1)                        --------->ANAC46  <---------ANAC58   ----------->RAV1(2)        <---------TOE2(3)          <---------At4g35610<---------ALFIN1          <---------HSFB2a(1)           <---------WOX13(1)  <----------DOF2  <----------DOF2 <---------ZAT14     --------->KAN4(1)          <---------YAB1 <--- -----ATHB12       <---------DAG2  --------->ZAT14    <---------KAN4(2)     ------>ZmHOX2a(1)   <----   gcttctttactctgcttctcactttctcgccccaccgagcactggcttgaagtcggaatgttcacctgatcgtctgtcctggttctcattgatgttggag  15052100                                                                  <---------ZAT18                                                                  --------->ZAT14                                                                 <---------ANAC46                                                            <---------MYB46(3)                                                         <---------ANAC58                                                         <---------ANAC58     <---------ZAT2                              --------->DEAR3(1)     --------->ZAT2                              ------->PIF5    <---------ANAC58     --------->At4g35610                         <-------PIF5   --------------->AtSPL8     <---------At4g35610                         --------->DREB2C(2)  <---------At4g35610                           <------NtERF2<-------GAMYB  <------NtERF2                                 --------->ATERF1(1)  --------->At4g35610                           --------->DEAR3(2)--------->ZAT18 ------->At4g35610                              --------->At4g35610                           <------ --------At4g35610                             <---------ATERF1(1)<---------ZAT14      <---------YAB1 -------ATERF1(1)                  <---------ANAC58      <---------ANAC46            <---------ICU4 ------RAP2.6(2)                   <---------ANAC46      <---------bZIP60(2)        --------->ICU4 ------DEAR3(1)                    <---------ANAC58<---------MYB52(1)    <----------DOF2<-----------GT1 -----At4g35610            <------ZmHOX2a(1)   --------->MYB52(1)<---------ANAC58   <---------YAB1   cggctgcagctacgagcattgagcttggaggaccatggcgtttcttaggcaccggcatgtcgtggttgtgtactcctttgtatgtgattattactgcttt  15052200  Previous    Next  AGI:  At4g30930.1    Description:  NFD1 (NUCLEAR FUSION DEFECTIVE 1); structural constituent of ribosome. Identical to 50S ribosomal protein L21, mitochondrial precursor (RPL21M) [Arabidopsis Thaliana] (GB:Q8L9A0;GB:O65556;GB:Q9B7N7); similar to 50S ribosomal protein L21, chloroplast / CL21 (RPL21) [Arabidopsis thaliana] (TAIR:AT1G35680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46958.1); contains InterPro domain Ribosomal protein L21; (InterPro:IPR001787) Range:  from: 15049830    to: 15051671    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g30935.1    Description:  WRKY32 (WRKY DNA-binding protein 32); transcription factor. Identical to Probable WRKY transcription factor 32 (WRKY32) [Arabidopsis Thaliana] (GB:P59583;GB:O65556); similar to WRKY4 (WRKY DNA-binding protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G13960.2); similar to WRKY4 (WRKY DNA-binding protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G13960.1); similar to unknown [Populus trichocarpa] (GB:ABK96161.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) Range:  from: 15051820    to: 15054048    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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