Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                 ------->GAMYB                                  <----                                              --------->MYB52(1)                                -----                                           --------->ANAC58                                     -----                 <----------DOF2           --------->ANAC46          --------->At4g35610        -----          <-----------GT1            --------------------->WRI1     ----------->RAV1(1)         -----     <------ZmHOX2a(1)   --------->YAB1    --------->ANAC58       --------->At4g35610      ----------   agtagtaggaaattaccttcttttcactcatatttggcacatagaacgcaacggagaagagattgaagagcagcacaacaacaacaagagcccaaaagac  15038900                           ---------->DOF2                         --------->ANAC58                         --------->ANAC58                   ------>ZmHOX2a(2)                                                    <---------LBD16                  --------->CCA1(2)                                                  -------->P                  <------ZmHOX2a(2)                                                <---------MYB111(2)   <---------YAB1<---------ARR11(3)                                                <---------MYB55(2) <---------At4g35610--------->ANAC46                                               --------->AtMYB61 ---->ANAC55(1)  --------->AGP1                                                    <---------MYB52(2) -----ANAC55(2)  --------->ARR14(2)                                                <---------MYB111(1) ---->ANAC58     --------->ARR11(3)                                                --------->MYB46(3) ---->ANAC58     <---------ARR14(2)             ---------->DOF2                   ------>MYB46(1) ---->ANAC55(2) --------->GLK1(1)           --------->TOE2(3)                     ------>MYB83 ---->ANAC46    <---------GLK1(1)        --------->GLK1(1)                    ------->TEIL >DOF2         ----------->ARR10         <---------GLK1(1)         <---------TOE2(3)------->GAMYB   <   gtaatctgattcagagagagatccgaaacgaaagaagcatgagaaatctcaaaagcgaaatcaaaaactagggtttgatgcaccaacaaccctggatgag  15039000                                                        --------->ARR14(2)                --------->YAB1                                                        <---------ARR14(2)               <---------ATHB12                                  <-----------------------TaNAC69(2)         --------->ANAC55(2)                                 --------->CCA1(2)     <------ZmHOX2a(1)     <---------ANAC55(2)                           <--------P          ---------->DOF2            <---------ARR14(2)     ----                    ---------->DOF2         >>>>>>>>>TBF1                 --------->ARR14(2)     <--- ---------ANAC46  ----------->HVH21     <------ZmHOX2a(1)    ---------->ID1 <-------TEIL --------->ICU4   agtcgtagacttgagaagacatgaaaggggtagagagacggaggaagaagaaagagaggatttgttcttctctgcaaattcgtaatgggtaatcatccga  15039100                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                   --------->LBD16                                                  --------->HSFB2a(2)           <------MYB83                                                  <---------LBD16               <------MYB46(1)                                                 <---------LBD16               --------->MYB59         --------->At4g35610                     <---------ANAC46          <---------ZAT6         <---------At4g35610                  <----------DOF2             <---------TOE1(3)     <------ZmHOX2a(1)                       <---------DAG2               <---------TOE2(3)        <- ----->ARR14(2)                            ------->TEIL           ----------->GT1      <---------At4g35610 ------ARR14(2)                       --------->CCA1(2)        ---------->DOF2 <---------AtMYB61<----   atttggaggagagctaagttagagagatagatagagagagagacggacctttcggggattttgagaaaaggaaattagggttaggtttctgcttctgtct  15039200                                                                                         <---------ARR14(2)                                                                                         <---------ARR11(1)                                                                                         --------->ARR14(2)                                                     ------>ZmHOX2a(2)                  <---------ARR14(1)                                                   --------->ARR14(2)                   <---------CCA1(2)                                                   --------->ARR11(3)                <------NtERF2                                                   <---------ARR11(3)              --------->DEAR3(1)                                          <---------ANAC46                         <---------DEAR3(1)                                          <---------ANAC58                        --------->ATERF1(1)                            <---------ZAT2<---------ANAC58              <-----------HVH21<-----------ARR10                            --------->ZAT2--------->DEAR3(1)      <---------DAG2<---------ANAC58                            <---------At4g35610   <------------------------ANAC81 <------NtERF2     <---------MYB52(1)     --------->At4g35610   <---------CCA1(2)     --------->TOE2(3)------->TEIL  --------->ETT(1)         <-----------ARR10  ----------------------->TaNAC69(2)<---------ANAC58  <---------ANAC46    --------->MYB52(1) <------NtERF2            <----------DOF2<---------ATERF1(1) ----------RAV1(1) <------ZmHOX2a(1)    --------->ZAT18      ---------->ID1---------->DOF2          - ------DOF2     <------ZmHOX2a(1)   ---------->CDC5<---------ARR14(2)*TSS <---------WRKY12  <--------   tttgtcggatagttttgaggaggagaacggagcttagcttagcgccgtgtttggatcttcttcgtctcctttttcgtcaaaggcgtcgtcgtatctttac  15039300                                                                                                   <-                                                                                                  ---                                                                                        <------MYB46(1)               <------MYB83                                                             <------MYB83               <------MYB46(1)                                                         --------->MYB59  --------->AHL20(2)                       <-------GAMYB                               <---------AtMYB61  ----------->TBP<---------MYB52(1)       ----------->GT1                            <---------MYB52(1)  <---------AHL20(2)                     --------->MYB59                     <-----------GT1     ---- -------->YAB1--------->MYB59<----------DOF2<---------MYB52(1)         <---------MYB46(3)   --------- --DOF2     <---------MYB52(1)      <---------AHL20(2)       --------->TOE2(3)     ------>ZmHOX2a(1)   aaatataaatctcggttcggttttgtattcactttggtttaattcggttattcaacaaaactatctcaaacagttgttgttactcctgtttggtctgaac  15039400              ------->MYC2              ------->MYC3              <-------MYC3              <-------MYC2             <---------ANAC58             <---------ANAC55(2)             --------->TGA1a             <---------bZIP60(2)             --------->O2             <---------TGA1a                                 <---------AHL20(2)             --------->ANAC55(2)                            <---------AHL20(2)             <---------ANAC46                   <---------ANAC58                --------->ARR11(3)             <---------O2             *TSS      <---------ANAC58       --------->TOE2(3)   --------->AHL20(2)                 <---------TOE1(2)     <---------AHL20(1)  --------->GLK1(2)  <---------YAB1                     <---------ANAC46       --------->AHL20(1)  <---------ARR11(3) --------MYB52(1)                <-----------HVH21          --------->AHL20(2) --------->RVE1(1) ------>At5g28300   <---------ZAT14 <---------LBD16        --------->AHL20(2)--------->AHL20(2) ------->GT1 <---------ANAC58 <---------ANAC58 <---------HSFC1(2)      --------->TOE1(3)          --- -->HVH21  <-------------DYT1 <---------ANAC58 --------->HSFC1(2)   <-----------GT1              ----   ggttattaaaaactcacgtgtctgtaggggttccatgtctcgggttcgaagcttgtctgaaattaattttaaaccttaaaaaaatctagagagagaccaa  15039500                                                         <---------ALFIN1                                                      --------->PCF2                                                      --------->PCF5                                          <---------MYB52(1)             --------->ZAT18   --------->PCF5<---------bZIP60(1)    <------NtERF2 --------->At5g28300<---------ALFIN1<-----------HVH21    <---------------------WRI1 --------->PCF2--------->bZIP60(1)   ------>NtERF2  <-----------HVH21 --------->MYB46(3)<---------TCP20  --------->DEAR3(1)     <---------ALFIN1<-----------HVH21                         <<<<<<<<<TBF1 <--- --------->DEAR3(2)     <---------ZAT14  --------->At5g28300 ------>ZmHOX2a(1)  <<<<<<<<<TBF1    ---- ------>DAG2 <---------ZAT14   <---------TCP20 <---------ZAT14         <-----------GT1       -------- ------>DOF2 --------->ZAT14  <-----------HVH21----------->HVH21    --------->MYB52(2)<<<<<<<<<TBF1   aaagccgacgattagtccaccgtgactccaccggtccctccaccgtgacttcaccggtccctcctccgattagttactcttcttcttcttcttcccccgt  15039600                                                                                                   <-                                                                                                   --                                                                                             <-------                                                                                             <-------                                            <------ZmHOX2a(1)                                -------- ------ARR14(2)                        ------->TEIL                                          <------- ----->ARR14(2)             <---------WOX13(1)      <----------DOF2      ---------->DOF2     -------- ->LBD16                <---------ANAC46 <-----------RAV1(2)  <----------DOF2        <----------DOF2   ttccgatttgatttgtttctgaagttgctgatttatacatgtatcaggaaatggctttaagagacttttggtgatcaaagggcatgactttcacagattt  15039700                                                                                                    -                                                                                                    -                                                                                                    <                                                                                               <-----         ----------->GT1                                                                       <-----    ---------->DOF2                                                                            ------ --------HSFB2a(2)                                                                             ------ ------->HSFB2a(2)                                                                          --------- --GLK1(2)<-----------HVH21                  <---------MYB46(3)                             --------- --ARR14(2)                               <---------MYB46(3)                           ------>ZmHOX2a(1) ->ARR14(2)                            <-----------RAV1(1)                         <---------GLK1(1)< --ARR11(3)                         <---------ALFIN1                     <-------TEIL --------->TOE2(3) ->ARR11(3)                        <---------ZAT14                    <---------HSFB2a(1)  <---------ATHB12   tccagcaaaagtcgtcaaatgtccaagactcattttctccactgttgttgttgataagagtctgaaacaacaaggttcgtattggattcctcaataatat  15039800  Previous    Next  AGI:  At4g30890.1    Description:  UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 24 (UBP24) [Arabidopsis Thaliana] (GB:Q9FPS3;GB:O65560;GB:Q8L7U2); similar to UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT1G17110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40715.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 15036102    to: 15039269    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g30900.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK94135.1); contains InterPro domain Endonuclease/exonuclease/phosphatase (InterPro:IPR005135) Range:  from: 15039438    to: 15042317    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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