Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <------ZmHOX2a(2)                                                                                      <---------ARR14(2)                                                                                      --------->ARR14(2)                                                                                   <---------ANAC46                                                                                   --------->ANAC55(2)           <----------DOF2                                                         <---------ANAC55(2)           <---------DAG2                                                         <---------LBD16       <---------ZAT18                                                           --------->MYB52(1) ------NtERF2                                                                  <-----------HVH21 --------DEAR3(2)                                                       <------ZmHOX2a(2) -------RAP2.6(2)                                                      --------->ARR11(3) -------DEAR3(1)                                                      <---------At4g35610 ----->ATERF1(1)      <---------YAB1                                  --------->At4g35610           - --TOE2(3)<---------DAG2 <---------YAB1---------->DOF2           <--------P--------->ANAC46       ---   tcggcctagtcccctttttttgtttttattacagaaaatacaaaagttacagagaatacaaggtcgggttgcagatcacgacgttacggatcatcgtgga  15028000                                                                         --------->ANAC55(2)                                                                   --------->HSFB2a(2)                                                                   <---------HSFB2a(2)                                                                  <---------LBD16                                                                  <---------ANAC46                                                               <---------ARR14(2)                                                            ----------------------->TaNAC69(2)                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                        <------ZmHOX2a(1)<---------ANAC55(2)                                                    <---------ANAC58    <-------TEIL                                                    <---------ANAC46  --------->ARR14(2)                                               <---------ATHB12--------->ARR14(2)    <---------MYB46(3)                                          --------->TOE2(3)================================RAV                                        ------->TEIL<---------ANAC58  <---------ARR14(2) -------->ALFIN1                    <---------------AtSPL3 <-----------RAV1(2) <-----------RAV1(1) ------>ALFIN1--------->YAB1        --------------->AtSPL8<------ZmHOX2a(2)  <----------DOF2     ----   atgtgggtagaaagactcataagactccatgaattcgatatgtacctcaatggtgcgaggatcaggtttcgggatacgtctttgttgttgttgaagtttc  15028100                                          <---------WOX13(1)                                    --------->ATHB51                                    -------->ATHB1                                    --------->ATHB12           ----------->GT1         ----------->HVH21                                   <---------YAB1      ----------->RAV1(1)           --------->O2  <----------DOF2             <---------TOE2(3)       <----------ID1             ------->TEIL ----->HSFB2a(2)            <---------AHL20(2)  <---------ANAC55(2)      ---------->DOF2       ------   tcgactttgttgtttgatgaaaatatgaaattaatgtattattgatagataagtaaacaacaaaatagtaaaacccaaagatgaaccaagtgacaaattg  15028200                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  <--                        -------->HAHB4                       ------->TEIL                         ---                       --------->ICU4                      ------->GAMYB                         <---                    <---------YAB1                        --------->MYB46(3)                     <---                    ------>ZmHOX2a(1)                     <---------MYB52(2)                     ----                   --------->TOE2(3)                     <---------TOE2(3)                     <-----                  --------->YAB1                        <---------DOF5.7(2)                   <------             --------->At4g35610                      --------->DOF5.7(2)         ---------->DOF2<---             <---------At4g35610  --------->AHL20(2) <----------DOF2   ----------->HVH21      ------- ----->GT1 <--------P<---------ICU4            ---------->DOF2        <---------WOX13(1)      -------   tgacaactacatggtagctatcctaattatcgaacataaatttttcatcaaaagtctttaacgaaccaagtgaatgacatgtttcaaagtcgaatactaa  15028300  <---------ZAT14 -------AHL20(2) ------>ATHB51 ----->ATHB1 ----->HAHB4 -------ICU4 ------>ATHB12 ------ATHB12 ------ATHB51 ----->ICU4 ----ICU4 ---------AGL15 ------YAB1 -------->AGL15  <---------ARR11(3)     <---------AHL20(2)    --------->MYB52(1)--------->HSFB2a(2) -->ICU4         --------->ARR11(3)<---------YAB1       --------->LBD16         <---------HSFB2a(2)   ttattgtactggtttaaaagatttgttccaaattgatatgatttaaaccagaagtctccgtatgaaacggagacttactcttcggcaagagaaggtttta  15028400                                                                                --------->ARR11(3)                                                                            ---------->DOF2                                                                           --------->TOE1(2)                                                                   <---------DEAR3(1)       <--------                                                            ------>ZmHOX2a(1)   <---------ARR11(3)                                                            ============================HOX2a_HOX2a                                 --------->ANAC58      --------->KAN4(2)  --------->MYB46(3)<--------                    <---------GLK1(2)               <---------ANAC58--------->LBD16     <----------DOF2   --------->ARR14(2)            --------->ANAC58   <---------ANAC58------>NtERF2      --------->TOE2(3)   <---------ARR14(2)            *TSS         ---------->DOF2     <---------LBD16<------ZmHOX2a(2)<--   gtcaaaatccccattttttaaaaattctcaacaaaacgcctaaaaactgaaagtgcttattcctcttctccggcgaaccaaagatcaaacctttgcgaga  15028500                                                                                         <---------WOX13(1)                                                                                      <---------ZAT6                                      --------->ANAC58                                --------->ICU4                                      --------->ANAC58      --------->AHL20(2)   <------MYB83                                 --------->YAB1             <---------AHL20(2)   <------MYB46(1)             <---------LBD16    <---------ATHB12      <---------ANAC58          <---------MYB46(3)  <-----------GT1             --------->WOX13(1)      <---------ANAC58         --------->ALFIN1 <-----------GT1         --------->GLK1(1)          ------>ZmHOX2a(2)        <---------ANAC46 -ANAC58<----------DOF2  <---------CCA1(2)      <---------YAB1               <---------ANAC58-------- -ANAC58<---------DAG2  --------->ARR14(2)   <---------AHL20(2)              <---------ANAC58-------- -------GLK1(2)         <---------ARR14(2)  --------->AHL20(2)   <XXXXXXXXXXXXXXXXXXXXXMIR830*      -   gaatttccctctttttcggcaacgagtatatccaatcagcaaggaattttatgatcgcttgataaattgaaactatttggagtgggtagtgatggatgac  15028600                                                                 --------->ANAC46               <---------ANAC46                                  --------->ANAC58             -------             <---------ZAT18                    --------->HSFB2a(2)                           -------             --------->ZAT18                    <---------HSFB2a(2)                           <------   <---------ANAC46                        <-----------RAV1(1)   --------->ANAC58             ------- --------->CCA1(2)                   <---------ANAC46         <---------ARR14(2)   <---------ANAC58 --->TGA1    --------->ZAT14      <---------RAP2.6(2)  --------->ANAC58       ---------->DOF2 <------ --->HVH21   <---------ZAT14     <---------At4g35610   --------->ANAC58---------->DOF2  --------->ETT(1) ---------->HVH21         <---------TOE2(2)--------->ALFIN1   --------->ARR14(2)   <---------ANAC58   gagagacgggtactgtgccctgagaaccgaggtttagcggcttatgtgttgcagaagaagcaagaatacgcagaaaagcccaaaggcttgtcggaaaatc  15028700                                              <------ZmHOX2a(2)                                             --------->ARR14(2)                                             <---------ARR11(3)                                          --------->ANAC58                                      ------>NtERF2                                     --------->DEAR3(1)                                     --------->ANAC58                                     --------->ANAC46                                     <---------bZIP60(1)                                     --------->ANAC58                                   <---------ATERF1(1)        ---------->DOF2                 <------                                  ----------->HVH21        --------->ANAC58                   <------    <------ZmHOX2a(1)        <---------ARR14(2)            --------->ANAC46               <---------ANAC58 -->GLK1(2)                  --------->ARR14(2)------>ZmHOX2a(2)              <------ZmHOX2a(2) -->ARR14(2)                --------->ALFIN1 <---------ARR14(2)               ======================= ---ARR14(2)             <------ZmHOX2a(1)--------->ANAC58 --------->ANAC58  --------->ARR11(3)    <- -->ARR11(3)             ============================HOX2a_HOX2a            --------->At4g35610<----- ---ARR11(3)             =============================HOX2a_HOX2a     <-----------HVH21   <---------ANAC58   tggagaggacatttgttaaggggtataggagtgtctgcgacgccaaggatcccattaacacactcaaagacttgtcgcagatcaagtatgtttcttgctt  15028800                                                                                        --------->ZAT18                                                                                        <---------ZAT18                                                                                     <---------ANAC58                                                                                     --------->At4g35610        ------>ZmHOX2a(1)                                          --------->ATHB12  <---------ANAC58 ---ANAC58                                                       <-----------HVH21   <---------At4g35610 ---ANAC58                    <<<<<<<<<MYB2         --------->CCA1(2)       <---------ANAC58     ---- ==============HOX2a_HOX2a  <------MYB46(1)        --------->ARR14(2)       <---------ANAC46<-------- ---------DOF2    ------>ZmHOX2a(1)<-----------GT1 <---------ARR14(2)  <---------MYB46(3) <---------- -----DOF2<----------DOF2   <------MYB83   <---------YAB1  --------->ATHB12 <---------ANAC58<--------   tctttcgctcctcttttctcctatggaatttggttttctactcttcttattgggatatgggttattgggtcattggtttcttgtttgaggtgcccttttt  15028900  Previous    Next  AGI:  At4g30870.1    Description:  ATMUS81; endonuclease/ nucleic acid binding. similar to repair endonuclease family protein [Arabidopsis thaliana] (TAIR:AT5G39770.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80394.1); similar to Os01g0948100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045390.1); contains InterPro domain DNA repair nuclease, XPF-type/Helicase; (InterPro:IPR006166); contains InterPro domain Helix-hairpin-helix DNA-binding, class 1; (InterPro:IPR003583); contains InterPro domain Restriction endonuclease, type II-like, core; (InterPro:IPR011335) Range:  from: 15028433    to: 15032640    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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