Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->ANAC55(2)                       --------->ANAC58              <-----------RAV1(1)                       --------->ANAC46  --------->ZAT18                       --------->ANAC58  --------->ZAT14                    <---------ARR14(2)                      <---------TOE1(3)  <---------ZAT14                    --------->ARR11(3)                     <-----------GT1   <---------------AtSPL8               --------->ARR14(2)                   <-----------GT1<----------DOF2 ------>ZmHOX2a(1) ----------->GT1 ---------->DOF2 ------->YAB1    <---------AHL20(2)    <---------------AtSPL3       <---------MYB46(3)      --------- -TOE2(3)  --------->ANAC55(2)    --------------------->WRI1   <---------ATHB12 ----------->GT1------   atcagaaaattttaagtattttttcacgttatccaactttgagagtactgtccttgtgttggccaataagtggttgaatatatggtaaaagtataaaagc  15000700                                                                      ------->TEIL                                                                      --------->ARR14(2)                                                               <----------DOF2                                                          --------->SPL7                     --------                                                       <---------ANAC55(2)                  <--------                                                       <---------ANAC58                     ---------                                                       --------->ANAC55(2)         ------->TEIL               -------->P                              <---------ANAC58         --------->ANAC55(2)               ------>MYB83                           --------------->AtSPL3    <---------ANAC58             <---------MYB111(1)                      --------------->AtSPL8    <---------ANAC55(1)     <-----------RAV1(1)                   <-----------HVH21   <---------DAG2   <---------ANAC55(2)   --------->YAB1                         ------>ZmHOX2a(1) <---------ALFIN1    <---------ANAC58   --  <---------ATHB12   <----------DOF2    <---------ANAC58  ------->TEIL<---------ARR14(2)<---------ATHB12 ->DOF2      <---------MYB59            <---------ANAC58<---------SPL7--------->GLK1(2) <---------YAB1 --->At4g35610 ------>MYB46(1)   --------->AHL20(2)  --------->MYB52(1)       <-----------GT1<-------   tcccatcatgttggacctactagctttgctatatataaaatgtcctgtcattgcataacgtaccactttctgaatctgttttacgtgcctatcaatgatt  15000800                                                                                                 <--- <----------DOF2                                                                          <----------DOF2 ->ATHB12    --------->TOE2(3)                                                          ------>ZmHOX2a(2) -ATHB12   -------->P                         <---------ARR11(3)                      --------->ARR11(3) >ICU4--------->ZAT6                          --------->ARR11(3)                      <---------ARR11(3) -------->ID1----------->GT1                  <---------GLK1(2)        --------->AHL20(2) ------>ZmHOX2a(1) -ATHB1    <---------At5g28300              ----------->ARR10  ---------->DOF2      <---------ATHB12   tgtctttaacacttaccgtaatattctacaattaagttcaagtgcctagattttctaaatgtgtataaagacattatatatggcaaatgatcctttagat  15000900                        <---------GLK1(2)                 <---------ATHB12                                                          ----------                --------->ANAC58                    <---------At5g28300                    --------->ANAC58                --------->ANAC58        --------->AHL20(2)                           <--------P         <---------AHL20(2)           >>>>>>>>>GATA-1                              ----------->GT1 --         --------->AHL20(2)      --------->YAB1    <-----------GT1    --------->ANAC58     --------->ANAC58 --------GT1 <---------ATHB12   <-------TEIL<-----------GT1           --------->ANAC58   ---------->DOF2   aaccatttcatttaaatcaagcattcgattcgcattcatagataaaatactattcaccggtccagttctaactagccatccagtctggttagaaagcaaa  15001000                  <-------TEIL                                                 --------->ARR14(2)              --------->MYB59                                    --------->ARR14(2)              <---------TOE2(3)                                  <---------ARR14(2)          <---------YAB1                                        <---------CCA1(2)       <---------AHL20(1)                 --------->ZAT6<------MYB46(1)        <------------CBF       <---------AHL20(2)     <------ZmHOX2a(2)         <------MYB83           <---------ARR14(2)----   <---------AHL20(2)        <---------ARR14(2)        --------->MYB59       --------->LBD16--------- ->GT1 --------->AHL20(2)    --------->ARR14(2)        <---------AtMYB61    ------->GAMYB--------->YAB1 --------->GT1<---------TOE1(3)------>ZmHOX2a(2)  <---------AtMYB61        <---------LBD16 --------->ICU4   attgtttattttattttaggttcagttttcagatcggttttctaacactgttttggtttggttctcgtatcggttcaaccggattggatagtcataaaga  15001100                                                               <---------TOE2(3)                                                               <---------TOE1(3)                                                          --------->ATHB12                  <--------                                                        --------->At5g28300                 <--------                                                        --------->LBD16               --------->ARR11(3)                                        *TSS           <---------ANAC58           <---------At4g35610                                       --------->AHL20(2)--------->ICU4         <-----------RAV1(2)        ------>ZmHOX2a(1)              ----------->TBP <---------ANAC58       <-----------HVH21    <- ----->GLK1(2)                       <-----------TBP   ----------->GT1        <-----------TGA1     <- ->DOF2--------->TOE2(3)     ---------->DOF2      ---------->DOF2        <<<<<<<<<MYB2<---------ARR11(3)   atttgaagtccttaattaagcccaaaacaagtagagcccatatatatactaacaaagccgtgattagggtttttggttttcgtcagaagatttcaaggtt  15001200       <---------------------WRI1                                          <---------ANAC58   --------->ARR14(2)                    --------->REM1(1)                 <---------ANAC58   <---------ARR14(2)               <---------ARR14(2)             <---------LBD16  <---------GLK1(1)                 <---------AGP1   <----------DOF2    <---------WOX13(1)       <--- -TOE1(3)                           --------->ARR11(3)         --------->ATHB51       --------->ARR14(2) -TOE2(3)               <------NtERF2 ------>ZmHOX2a(2)        --------->ATHB12       <---------GLK1(2) --------TOE2(3)<---------ATHB12    --------->ARR14(2)        --------->ICU4          <---------ARR14(2) --------TOE1(3)--------->MYB46(3)  <---------ARR11(3)        <---------YAB1    <---------MYB46(3)   tagggtttctgcaattcaaccatggcagagcaggtttggatctacattacattgtctttatgttataattggggattgctagttgttggattctcgtttt  15001300                                  <---------ANAC58                                  <---------ANAC46                               <---------AtMYB61                            --------->ATHB12                          <---------WOX13(1)                        -------->HAHB4                        --------->ATHB12                              ------->GAMYB                        <---------ICU4                                --------->AtMYB61                       --------->ICU4                                --------->MYB46(3)                       <---------ATHB12                             -------->P                       <---------YAB1    <---------At4g35610        --------->ANAC58               --                      <---------TOE2(3)  --------->At4g35610        --------->ANAC58              ---                 <----------DOF2  <---------ANAC58              --------->ANAC58                <----                <---------ANAC58<------MYB46(1)                 --------->ANAC46              <------                <---------ANAC58<------MYB83                    --------->ANAC58    <---------TOE1(3)     <----------DOF2 --------->YAB1 --------->ALFIN1   <---------ANAC58             <---------TOE2(3) ------LBD16   ---------->ID1 <---------WOX13(1)       <---------ANAC58 ---------->DOF2     <--------   ctgggttctttgattttggcttttaatgatggattggtgtgtttgcagacggagaaggcgtttcttaagcaaccaaaagttttcttaaggtaattgtcac  15001400                                                                             --------->GLK1(2)                                                                            --------->GLK1(1) ------->TOE2(3)                                                            <---------GLK1(1) ------>ANAC46                                                     <---------At4g35610 -----ALFIN1                              <---------YAB1           <---------ZAT2 -----GT1       <----------DOF2       <----------DOF2              --------->At4g35610   ---------->DOF2 ---HVH21  <---------At4g35610 <---------AtMYB61<---------YAB1     --------->ZAT2  <--------P   acctcaaaaattcaactgctttgtattttggctatggtctctttatgcttatgattcaaatgttctatcagctcgaagaaatctggtaagggaaagaggc  15001500                    --------->HSFC1(1)                    <---------HSFC1(1)                                                  --------->At4g35610                    <---------HSFB2a(2)                                                 --------->ZAT2                    --------->HSFB2a(2)                                                 <---------ZAT2                   <---------LBD16                                 <---------------AtSPL8   --------->DAG2<---------ARR14(2)                                <---------------AtSPL3          <-  ---------->DOF2--------->ARR14(2)                                <---------TOE1(3)    <---------At4g35610   ctggtaaaggaggtaatcgtttctggaagaacattggccttggtttcaaaactccaagagaggctattgaaggtactgtttttatgtctcagctctcaat  15001600  Previous    Next  AGI:  At4g30800.1    Description:  40S ribosomal protein S11 (RPS11B). Identical to 40S ribosomal protein S11-2 (RPS11B) [Arabidopsis Thaliana] (GB:O65569); similar to EMB1080 (EMBRYO DEFECTIVE 1080), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G48930.1); similar to 40S ribosomal protein S11 [Chenopodium rubrum] (GB:CAK22271.1); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) Range:  from: 15001140    to: 15002677    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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