Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------HSFB2a(2)                                                    --------->HSFC1(1)         ------------>CBF                           --------->HSFB2a(2)        --------->YAB1                           <---------RAP2.6(3)        <-----------GT1       <------ZmHOX2a(1)  ------>NtERF2 <------MYB46(1)          --------->TOE1(2)     <---------ANAC46                               ------ <------MYB83 --------->AHL20(2)                <---------ANAC58                               ------ -------->MYB59      ---------->DOF2     ------------>CBF                     <------------CBF------- ---------TOE2(3)<----------ID1  ---------->DOF2<---------ANAC58       --------->ALFIN1  <----------DOF2   attaggtttatcacaatttaagacaaagcctaggaaaaagaagaacaatgccgtctagaaacaaatctaataagtggcgaaattgaagaagcttttacct  14960300                                 <-------GAMYB                           <----------CDC5                           <------NtERF2                          ------>NtERF2                         <---------ANAC46                        <------NtERF2  <---------At4g35610                        --------->ATERF1(1)                        --------->RRTF1(1)                        ------>NtERF2  <---------ZAT2                        --------->RAP2.3(1)                       <---------ORA47(2)                       <---------DEAR4(2)          ---------->DOF2--------->DEAR3(1)  <------------CBF     <---------ATERF1(1)   <---------AHL20(2)                                 ----- --->TOE2(2)          <---------DEAR3(1)    <----------DOF2                              <---------TOE2(3) --->TOE1(2)          --------->ANAC46 --------->ZAT2                        ---------->DOF2--------- ---->RAV1(2)        <---------LBD16   --------->At4g35610  <---------At4g35610          <---------TOE1(3)   gagagattgagagaaagagagaacgcggcgcagagcgttgcagctgttttattgtctgttttagctcttagcttctgtccaaagcatttttagggtttgg  14960400                               <---------AHL20(2)                               --------->AHL20(2)                             <---------YAB1                          <---------AHL20(2)                       --------->ARR11(3)                       <---------AHL20(1)           <---------------AGL15           ----------------->AGL1          <-----------------AG--------->AHL20(2)      --------->TOE1(3)--------->ICU4   --------->DAG2      <---------ARR11(3)             <----------DOF2  ---------->DOF2      --------->AHL20(1)          <---------ARR11(3)                            <--- ----->ID1<-----------------AGL1      --------->TOE2(3) --------->AHL20(2)          ----------->GT1 >ALFIN1 <-----------GT1  <---------YAB1           --------->ARR11(3)   <---------AHL20(2)       ----   cccaaaaagcttaaccattttggaaaatattattaaaaaacattaaacttgattatcttttaatactgagacattttatatcaaatttgtaaaacataaa  14960500             --------->ATHB12             --------->YAB1             <---------ICU4            --------->ICU4             ----------->GT1                --------->At4g35610            <---------ATHB12  <---------ZAT6           <---------bZIP60(1) --------->ICU4             ----------->GT1            --------->TGA2(1)                  <-------TEIL ------AHL20(2)           <---------YAB1               --------->bZIP60(1) --------->At4g35610 ----->AHL20(2)         --------->ATHB12         <-------TEIL  <---------YAB1      <-----------GT1   aaaatgatcaaaaaatcattactcagtgattagtgaaactgtagttacaagtacattatgtcactatcaataagctaagctaaattcacaaattcatttc  14960600                       <---------GLK1(2)               <---------TOE2(3)                   <---------AHL20(2)              ---------->DOF2                   --------->AHL20(1)              <----------DOF2           <----------DOF2                      --------->AHL20(2)    <------------------------ANAC81        --------->ARR11(3)                      <---------AHL20(2)   <---------AHL20(2)             -        <---------ARR11(3)              ------->TEIL  <---------TOE2(3)      ---------->ID1        --        --------->GLK1(2)    <---------AHL20(2) <---------ARR11(3) <---------RVE1(1)               <-       --------->RVE1(1)<---------RVE1(1)       --------->ARR11(3)<---------ARR11(3)        *TSS  <--   --------->AHL20(2)  --------->ARR11(3)       <---------AHL20(1)--------->ARR11(3)     --------->AHL20(2)   <---------AHL20(2)  <---------ARR11(3)  ------------>CBF       <---------GLK1(2)      <---------AHL20(2)   ttcatttaaaaatctttaaagtatagattttttaatctgatgtatcccaatatattatggataagatagatttttttttgttcttttgtatttaaatcgg  14960700                                                                                                    -                                                                                                 ----                                                                                               ------                                                                                             --------                                                                                           --------->PCF2                                                                                           <---------ARR14(2)                                                                                          --------->ATERF1(1)                                                             <---------ALFIN1            <---------ATERF1(1)                                                            --------->ZAT2               --------->LBD16                                                            <---------ABI4(2)------->GAMYB<------NtERF2       <---------WOX13(1)                             <------ZmHOX2a(2)     --------->ANAC46 --------    <---------YAB1                              <---------ANAC46  <---------MYB52(1)    --------->DEAR3(1) -------->KAN4(2)                      --------->ANAC58    --------->ANAC58 --------->ANAC58------>NtERF2 ------->KAN4(1)           --------->ZAT14      <---------ANAC58 <-------GAMYB         <---------LBD16 --------KAN4(1)       --------->GLK1(2)        <---------ANAC58 --------------------->WRI1--------->ARR14(2) ----ZmHOX2a(2)       <---------GLK1(2)--------->ANAC58    --------->ANAC58 --------->ANAC58<--------   atcattctaattggtggagagacagactctggactctgaagaagcaaatggctgggatcaccagcaccgttggattcaacgccattctcgccggagccac  14960800                                                         --------->ARR14(2)                                                         <---------GLK1(2)                       ----       <------NtERF2                                     <---------ARR14(2)                      ----      <-----------HVH21                               --------->ANAC46                          <----     --------->ALFIN1                              ------->TEIL                         <---------ICU4 -------->MYB52(1)                               --------->REM1(2)                     <---------YAB1 ----->AtMYB61                                   <---------ZAT18                     --------->YAB1-- >NtERF2                    --------->ARR11(3)   <---------ZAT14                    <---------YAB1<-- ->ATERF1(1)                <---------ARR11(3)   --------->ZAT14                <---------DAG2 <----- ->MYB46(3)    ------>ZmHOX2a(1)               --------------->AtSPL8           --------------------- -ATERF1(1)    ----------->GT1 <----------DOF2<---------ANAC46            <----------DOF2  --------->DEAR3(1)   caaaacggtgtcgcatcctgttaaatctaagctctttggtcttcgactctgtgtacccgaattctcaattgtttctctttccccttatcatcatcgccgt  14960900                                     <------NtERF2                                <---------DEAR3(1)                                --------->ALFIN1                               --------->ATERF1(1)                              --------->ABI4(2)                              <---------MYB46(3)                              --------->MYB55(2)                             <---------AtMYB61                             <---------DEAR3(1)                            <---------ABI4(1)                            <------NtERF2                            <-------GAMYB                           <---------DEAR4(2)                          <---------DEAR3(1)                          <---------DREB2C(2)                          --------->ALFIN1                         <------NtERF2<---------DEAR3(1)   --------->LBD16       <---------ABI4(1)   ------>NtERF2         --------->ATERF1(1)  --------->ANAC58  <---------ANAC46 --------->ATERF1(1)      <------ZmHOX2a(1)                ------  --------->ANAC46  <---------ANAC55(2)         <---------GLK1(1)                            --------  --------->ANAC58 <---------LBD16--------->ATERF1(1)  <------NtERF2            --------->GLK1(2) <---------LBD16 <---------MYB52(1)<---------ANAC58   ------>NtERF2             --------->ARR14(2) ----->WRKY12    --------->ARR14(2)<---------DEAR3(1) --------->LBD16      ---------->DOF2  <-------- ----->WRKY38(1) <---------ARR14(2)<---------ANAC46  <---------LBD16  <------MYB46(1)       --------- -----MYB52(1)   ----------->HVH21<---------LBD16    --------->LBD16  <------MYB83        --------->YAB1 ------->PCF5   <-------GAMYB--------->ALFIN1   --------->GLK1(1)    --------->MYB59--------->LBD16 ---------HVH21 <-----------HVH21 <------NtERF2<---------GLK1(2)     --------->MYB46(2)<------ZmHOX2a(1) --GAMYB        <---------RAP2.6(3)<---------ANAC58 <---------LBD16 <--------P  <---------ARR14(2) >WRI1<-----------HVH21<---------DEAR3(1)      <---------ARR11(3)<---------AtMYB61 <---------TOE1(1)   tgtcccgccatcacttgccgttacggaggcggtggtggcggaggctctagatttcccggcgataggagaggtaggcagaaagaatccgaggatgatgatt  14961000                  <------MYB83                  --------->ANAC55(2)                  <---------ANAC55(2)                  <------MYB46(1)     --------->ARR11(3)                                                     <---------WOX13(1)     <---------ARR11(3)                                                   --------->ATHB12    <---------GLK1(1)                  <---------WOX13(1)                <---------YAB1 --->ARR14(1)    --------->MYB59     <---------AHL20(2)                  --------->ICU4 ->ATHB12    <----------DOF2         --------->ATHB12          <---------At4g35610       ------->TEIL -YAB1     <---------At4g35610      --------->AHL20(2)         --------->At4g35610      <---------CCA1(2) >ICU4     --------->At4g35610      <---------AHL20(2)     <-----------RAV1(1)       <---------TOE2(3)   cgcttgatatctcagctattaggtaattgtggaaactattaattgatagaaattgaaatttctgtagctgaagttatgattgattttgatgtatctcaaa  14961100              <---------ZAT6          --------->MYB46(3)         <---------At4g35610        --------->ANAC58        --------->ANAC58                                                                        -----       <---------WRKY12                                        --------->AHL20(2)       --------->At4g35610     <-----------HVH21             --------->At4g35610         <---------AHL20(2)  <---------GLK1(1)    <------MYB46(1)          <---------YAB1  --------->At5g28300         <-----------GT1<---------At4g35610    <------MYB83<---------MYB52(1) <---------At4g35610      <----------DOF2 <----------DOF2  --------   --------->MYB59         --------->YAB1   ----------->GT1<---------ANAC46 <---------DAG2  ---------   ttgagtaggtcagccactgttaggcttattgatgatcagcagaacatggtaaaatgaagtgccttttaaatgtttaaactttttgatttcagcaaaaatt  14961200  Previous    Next  AGI:  At4g30690.1    Description:  translation initiation factor 3 (IF-3) family protein. similar to translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana] (TAIR:AT2G24060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66646.1); contains InterPro domain Initiation factor 3; (InterPro:IPR001288) Range:  from: 14960692    to: 14962472    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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