Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------LBD16           <----------DOF2   <---------At5g28300          --------->ANAC58       <---------GLK1(2)     --------->MYB52(1)           --------->ANAC58                    -------  ------->TEIL              <-----------GT1            --------->LBD16         --------->ARR11(3) -------TOE2(3)   --------->ICU4--------->LBD16      <---------LBD16          <------ZmHOX2a(1)    --   aatgtatcaaattctttgccaagattgtatttaccggagtttaaacttcgcaaaatgcggaagcatttttgagtttgaaaggattttgtatgatgccaac  14955000                                                              <---------ICU4                                                              <------------ATHB5                                                              --------->YAB1                                                              -------->ATHB1                                                              <--------ATHB1                                                              --------->ATHB12                                                             --------->ICU4                                                        --------->YAB1                                                     <---------ICU4              ---------->DOF2                                                     --------->YAB1       <---------TOE2(3)     <---------YAB1                                 <---------ATHB12  --------->At4g35610           -     <---------TOE2(3)                              <---------ATHB51  <-------GAMYB                <-  <---------AHL20(2)    ---------->DOF2    <----------DOF2   <---------ATHB12   --------->YAB1  ----- ---->RAV1(1)<---------GLK1(2)         <---------MYB52(1)    <---------YAB1 <------ZmHOX2a(1)   ----- ------->AHL20(1)<---------YAB1  <---------GLK1(1)  --------->ICU4    <---------At4g35610       -----   atatattatggtatagattatgctaaaaaagatagatttctgttactttggcaaataatgacaatgattgtgagttgaggaatcaaagtctcagtaatac  14955100                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                     --------->AHL20(1)                                                     <---------AHL20(1)                                                  --------->YAB1                                            <---------TOE1(2)                                            --------->LBD16    <---------MYB52(1)                     <---------LBD16 ----->NtERF2                              --------->LBD16 --------ALFIN1                            --------->ANAC55(2) ---->ANAC46                              <---------LBD16 ---->ANAC58                            --------->PCF5         --------->ANAC58                 <---- ---->ANAC58                           <-----------HVH21       --------->ANAC58        <---------O2   gacaccgtttgagtcaaaacgtttctgtccaattccagtctggtcccgggattaataaaatagacaggccttcccaggcccatttagtcacatggatgag  14955200                                                      <-------GAMYB                        ------>ZmHOX2a(2)            <---------MYB46(3)                     <--------                       <---------At4g35610    <---------CCA1(2)                             ---------                       --------->At4g35610----------->RAV1(1)                         --------->SPL7                 --------->DAG2         <---------ZAT14                              --------->SPL1(1)                ---------->DOF2         --------->ZAT14                              <---------SPL1(1)           --------->ARR11(3)           --------->ZAT18          --------->ANAC46   <---------SPL7           <---------ARR11(3)           <-------TEIL --------->MYB52(2)           <---------------AtSPL3          --------->CCA1(1)             <---------ZAT18        <-----------GT1    --------------->AtSPL3          --------->RVE1(1)            --------->ALFIN1   <---------YAB1          --------------->AtSPL8 -------HVH21>>>>>>>>>RAP2.2       --------->DAG2  <---------MYB52(1)         ---------->DOF2     ---   tcagagactaaaatatctaaaagtgatctgatgtgataagggtgcaccatatcgttcgttgtgattcacgagatgtaatctaaagccgtacgatttaaat  14955300                   <------ZmHOX2a(2)                  <---------ARR11(3)                  --------->ARR11(3)                  --------->ARR14(3)                  <---------ARR14(2)                  <---------ARR14(3)                  <---------AGP1                 <---------CCA1(2)                 <---------At4g35610         ------->TEIL        --------->MYB52(1)   --------->AHL20(2)   <---------AHL20(2)      <------------CBF                        ------>ZmHOX2a(2)  <---------ATHB12--------->ARR14(2)                              --------->GLK1(1)  --------->AHL20(2)------>ZmHOX2a(2)                      --------->ZAT18 -AHL20(2)    <---------ZAT14                              --------->WRKY38(1) *TSS >AHL20(2)   --------->ALFIN1           <---------ZAT6   ------->MYC3      <------------CBF   ------- --------->CBF--------->ZAT14    <----------DOF2         <-------MYC3     --------->ATHB12   <-------   atcaataaatgaacggtgcagatctcgcacattgactttgtagtggaaacaaaataaaacgtggactgatctctcttcattggtactctcaactctgtga  14955400                                                                                           --------->GLK1(2)                                                                              --------->ANAC58 ---->HVH21        <----------DOF2          <<<<<<<<<TBF1  <---------CCA1(2)  --------->ANAC58 ----HVH21       ---------->ID1    ---------->DOF2    <---------At4g35610    ------>NtERF2<---------GLK1(2)   cagcaagtttcagtgttttgtcttttaaaaaaactcttaaagcttcttcttctctcatctcatctctctgaaaaaatgccgagcaactgtgagattctgt  14955500                --------->HSFC1(2)                --------->HSFB2a(1)                <---------HSFC1(2)               <------ZmHOX2a(2)               ====================HOX2a_HOX2a               =================HOX2a_HOX2a              --------->ARR14(2)              <---------ARR14(2)       <---------ICU4      <---------YAB1      --------->ICU4                                      <---------ALFIN1    <---------ICU4                                       <---------ZAT14   --------->ICU4             <---------HSFB2a(2)     --------->At4g35610   ======================HOX2a_HOX2a    <---------ANAC58 --------->ZAT18   <---------YAB1 ------>ZmHOX2a(1)     <---------ANAC58 --------->ZAT14   ================================HOX2a_HOX2a        <---------At4g35610                    <-------   =============================HOX2a_HOX2a    ---------->DOF2     --------->ARR11(3)        ------>ZmHOX2a(1)   <------ZmHOX2a(2)          --------->HSFB2a(2)  <------ZmHOX2a(1)                        ---------  <---------ARR11(3)        ------>ZmHOX2a(1) <------ZmHOX2a(1)    <---------ARR11(3)   <---------GLK1(1)  --------->ARR11(3)     ------>ZmHOX2a(1) <-----------RAV1(2)--------->At5g28300 <----------DOF2   gcgagatcattatcgcgatccttcttcctcctctcggagtttgcttcaggaaaggatgctgcactgtaagttctctctctctctctttcgaattcctcaa  14955600             --------->ARR14(2)          ------>ZmHOX2a(1)          --------->LBD16          <---------HSFB2a(2)                  <---------AHL20(2)          --------->HSFB2a(2)                 --------->YAB1      --------->ARR14(2)                  --------->ICU4  --------->MYB59                      <-----      <---------ARR14(2)                 <---------WOX13(1)<------MYB46(1)                   --------      --------->GLK1(2)       --------->At5g28300  ----------->GT1    --------->ICU4       --------->YAB1 --------AGL15     <---------YAB1 --------->ICU4<---------YAB1 <---------YAB1             <---------YAB1 >TOE2(3)<---------LBD16     ----------->GT1 <---------YAB1<------MYB83           <----------DOF2 ---   ttttgaagaatcctggaacttcttatagagactgtaattttggattgattataatgtaatttggtatgagtaatgaagggagtgcttaatctatgatatg  14955700                                                                 <---------ICU4                                                                 --------->ATHB12                                         <---------WOX13(1)      <--------HAHB4        --------->GLK1(2)             <-------TEIL              --------->ICU4                     <X     --------->ARR14(2)       <---------YAB1       ---------->DOF2                                 <-     <---------ARR14(2)      <---------TOE2(3)   --------->LBD16<---------YAB1                   <--- ----YAB1             ==================================HOX2a_HOX2a                             <---- ->CCA1(2)            <------ZmHOX2a(2)--------->ATHB12       --------->YAB1         <---------AHL20(2) ---->TEIL  <---------LBD16<---------AHL20(2)    ------>ZmHOX2a(1)        ---------->DOF2     -------   aatcgcagaaattctctggattggatcaatttatgtttgattcattgattcctgaaagcttggataatcatttgaagaaagttgaattttttttatgtgt  14955800            ------->PIF5            <-------PIF5           <---------At4g35610                             --------->LBD16           --------->ZAT2                                  <---------LBD16           <------MYB46(1)                                --------->LBD16           <------MYB83                                   <---------ANAC46           <---------ZAT2                                 <---------LBD16           --------->At4g35610                           <---------LBD16        --------->ANAC55(2)          --------->MYB55(2)                     <XXXXXXXXXXXXXXXXXXXXMIR2111B* <---------ANAC58          --------->MYB111(1)               ------>ZmHOX2a(2)                   <---------ANAC55(2)         <-----------RAV1(2)               <------ZmHOX2a(2)                    <---------ANAC55(1) XXXXXXXXXXXXXXXXXXXXMIR173               <---------ARR14(2)                    <---------ANAC46 --------ANAC46                           --------->ARR11(3)                    <---------ANAC58   <- ------MYB46(3)                           <---------ARR11(3)         --------->CCA1(2)          <---- -----AtMYB61--------->ALFIN1             --------->ARR14(2)--------->LBD16   <-----------GT1  <----- -->ALFIN1<---------MYB46(3)      <---------ANAC46    <-----------HVH21     <----------DOF2    ------   ggtttgttttggcaggtggagtttttgatatgcctggtgttgacgatcttaggctatgtcccggggataatatatgcgatttacgtgattgtgtttcagc  14955900  Previous    Next  AGI:  At4g30650.1    Description:  hydrophobic protein, putative / low temperature and salt responsive protein, putative. Identical to UPF0057 membrane protein At4g30650 [Arabidopsis Thaliana] (GB:Q9M095;GB:Q6IDS0); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G30660.1); similar to salt and low temperature response protein [Brassica rapa subsp. pekinensis] (GB:AAT11798.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) Range:  from: 14954326    to: 14954974    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g30660.1    Description:  hydrophobic protein, putative / low temperature and salt responsive protein, putative. Identical to UPF0057 membrane protein At4g30660 [Arabidopsis Thaliana] (GB:Q9SUI0); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G24040.1); similar to unknown [Populus trichocarpa] (GB:ABK93775.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) Range:  from: 14955379    to: 14956124    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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