Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------YAB1                                                                       <---------AHL20(2)                                                            <---------ANAC58          <----------DOF2                                                            <---------ANAC58         <---------ANAC58     ----------->GT1                                        <---------ANAC46    <---------ICU4 -->ZmHOX2a(1)       <----------DOF2   --------->ZAT6    <---------AtMYB61      --------->ATHB12   -- ---->TOE2(3)  <----------DOF2    <---------ANAC58    <---------DAG2   --------->YAB1<---------ANAC58 -GLK1(1)      <---------DAG2     <---------ANAC58    <----------DOF2  --------->AHL20(2)--------->MYB59   taaaacaatgtgaaaccctttttctttgtgagtttgtcttgtcactaaattcccaacttttggtgtgttctattaatattcttcattgctttaggtctga  14953900                                                                                    --------->DAG2                                                                               ------->GAMYB                                                                         --------->ANAC58                                                                         --------->ANAC46                                                                         --------->ANAC58         <---------ANAC46                                            --------->ANAC58         <---------ANAC55(2)                <---------------AtSPL8   --------->ANAC46         ----------->GT1                 --------->AHL20(2)          --------->ANAC58            ----    <---------ZAT6                     <---------ANAC55(2)<---------ANAC58  ----------->RAV1(1) ----- ------->YAB1                          --------->ANAC55(2)<---------ANAC58  --------->MYB52(1) <-----   atcatagtgttaagtgaaataaacattgagggaaatgggttaagtaaatgtactgagatagcttgccatctaagcaagcaacagaaaaattgggctaatc  14954000                                                             <-----------GT1                                                   <-------MYC3                                                   ------->MYC3 ------->GAMYB                                                  --------->bZIP60(1)                                                  --------->bZIP60(2)                                                  <---------O2 --------------->AtSPL3                                                  <---------TGA1a<---------SPL7<---------ANAC58                                                  --------->O2<---------At5g28300                                                  --------->TGA1a--------->TOE1(2)         --------->HSFB2a(2)                      <---------bZIP60(1)         --------->ATERF1(1)         --------->LBD16                          --------->ANAC55(2)         <------NtERF2         <---------HSFB2a(2)                      ======================MYC_MYB<---------ANAC58        <---------LBD16                           <---------ANAC55(2)       <---------RAP2.3(3)      --------->PCF5                --------->ANAC46----------->HVH21       <---------DEAR3(1)     <-----------HVH21            --------->HSFB2a(2)        ------------------>SPL14        -------- ------>DOF2                      <---------HSFB2a(2)   ------>ZmHOX2a(2)--------->DAG2      -------- ---->YAB1--------->LBD16  --------->ANAC58       <---------ANAC46 --------->SPL7            <------- ----ATHB12                --------->ANAC58   <-----------HVH21<---------------AtSPL3     --------->YAB1   aaagtccggtcccggaaacaatagaagacaggccttctaggccaacttagtcacgtgatccattaaccgtacgataagggggcgagtcagagtaataata  14954100                                                                                 ----------->GT1                  <---------ANAC46                                      <------NtERF2                <-------GAMYB        <---------ANAC55(1)               ------>NtERF2                <---------ZAT14      <---------ANAC58        ---------->DOF2    --------->DAG2               --------->ALFIN1      <---------ANAC58      >>>>>>>>>RAP2.2      <---------TOE1(3)             --------->ALFIN1        <---------ANAC46    --------->ARR11(3)     --------->MYB59      --------->YAB1                 <---------ANAC55(2) <---------ARR11(3)     <---------TOE2(3)     <---------ATHB12            <---------ANAC58       --------->RVE1(1)  --------->ANAC58        --     --------->ICU4 <-----------RAV1(1)         --------->At4g35610   <---------PCF2              --- ->AHL20(2)--------->At4g35610   <---------ANAC58 ----------->GT1   <---------MYB46(3)            --- ->YAB1  <-----------RAV1(2)--------->AtMYB61   <---------At4g35610--------->ALFIN1      <-----------GT1 --ICU4  =======================RAV  --------->ANAC55(2)--------->CCA1(1)  --------->ANAC58--------->ANAC55(2)   tcccacaatgatcaggtgtgttgtgttgcaccataccttgcgtgttcttgagatgaaaatatctaaagagtgggggcaaggtaaggtaattttacgagat  14954200                                                       ------>ZmHOX2a(2)                                                      --------->GLK1(1)                                   ------>MYB83       <------ZmHOX2a(2)                                 <---------MYB59     <---------ARR14(2)                          <---------AHL20(2)         --------->ARR14(2)                   <---------SPL1(1)                 --------->ARR14(3)                   --------->SPL1(1)                 --------->ARR11(3)                          <---         <---------ZAT2   ----------->TBP            <---------AGP1                             <----         --------->At4g35610     <---------MYB46(2)  <---------ARR14(3)                         <----         <---------At4g35610  <-----------GT1        <---------ARR11(3)                     ---------    --------->ANAC58      --------->AHL20(2)        <---------At4g35610                    <---------ANAC58    --------->ANAC58--------->SPL7 ------>MYB46(1)  <---------CCA1(2)                      <---------ANAC46 <------NtERF2  --------------->AtSPL8           --------->ZAT14          <----------ID1   <---------ANAC58 ------->ETT(1) <---------------AtSPL3           <---------ZAT14  <---------ANAC58    ---------->DOF2 ------>RAP2.6(3) <---------SPL7--------->ANAC46--------->ALFIN1  <---------ANAC58 --------->AHL20(2) ------>DDF1    --------------->AtSPL3     --------->MYB52(1)  --------->WRKY12  --------->YAB1 <----   gtcggcatgtaagctgaagccgtacgatttatataccaaacaaataaacggtgcagatctcgtagttgacttggtagcgccaaaaataaaaagccgtgga  14954300                                                                               <---------HSFB2a(1)              --------->GLK1(1)                                                <---------HSFC1(2)              <---------GLK1(1)                                                --------->HSFC1(2)             --------->ARR11(3)                                                --------->HSFB2a(1)        <------------CBF                                                      --------->GLK1(2)      <---------AHL20(2)                                                      --------->ARR14(2)      --------->AHL20(2)    ------>MYB46(1)                                   <---------ARR14(2)      <---------YAB1      ------->GAMYB                                       <-----------ARR10   <----------DOF2        *TSS                                                --------->ARR11(3) ------WOX13(1)------>ZmHOX2a(2)        <---------ZAT18                       <---------ARR11(3) -----ANAC58 <---------AGP1 ------>MYB83--------->ZAT14           <------ZmHOX2a(2) --------CBF <---------ARR11(3)         <---------ZAT14         <---------At4g35610 >LBD16--------->ATHB12  --------->DEAR3(2)                     --------->At4g35610  --------->ZAT14 -----ANAC58<---------CCA1(2)    <----------DOF2         <---------ATHB12    <---------GLK1(2)   ttgctcttttaattggatctctgtgctaccgactactttcagtgttctcttcttctccactaattcagatcacattcaagaatcttcttcactcacatct  14954400                                                   ------>ZmHOX2a(1)                                                 <---------HSFC1(2)                                                 --------->HSFC1(2)                                                <------ZmHOX2a(2)                                               --------->ARR14(2)                         --------->ZAT18                                               <---------ARR14(2)                      --------->At4g35610                                     =====================HOX2a_HOX2a                 <-----------RAV1(1)                                     ------>ZmHOX2a(2)                                <---------MYB46(3)                                    ======================HOX2a_HOX2a             --------->ALFIN1                                    <------ZmHOX2a(2)                            <-------MYC3                                   --------->ARR11(3)                            ------->MYC3              ----------->RAV1(1)  --------->ARR14(3)                           <---------O2           --------->ANAC58        <---------ARR11(3)                           --------->O2           --------->ANAC58        <---------ARR14(3)                           ===============MYC_MYB         <---------ANAC46          --------->AGP1--------->HSFB2a(1)            <---------TGA1a         <---------ANAC58          --------->ARR14(2)                           --------->TGA1a------         <---------ANAC58          <---------ARR14(2)    <---------ALFIN1---------->ID1<-------GAMYB-   ctgaaaaaatggcgagcaacatggaagttttctgcgagatcttaatcgcgatccttcttccacctcttggagtttgtctcaaacgtggctgttgcactgt  14954500                                                                                                    <                                                                                            ---------                                                                                            <--------                                                                                         <------MYB83                                                                                      <---------ANAC58                       ------->TEIL          <---------ARR11(3)                       <---------ANAC58                    <---------YAB1           --------->ARR14(2)                       <---------ANAC46                  <---------ICU4             --------->ARR11(3)            --------->ARR11(3)       < --------->ATHB12<---------ATHB12            --------->GLK1(2)           <---------ZAT6  <------MYB46(1) --->At5g28300   --------->ICU4              <---------ARR14(2)       <--------P--------->ATHB12   -- -------->ARR11(3)--------->YAB1             <-----------ARR10    <---------AtLEC2    <---------AtLEC2   aagttattggaattttggaatcatgaatcttgagatttagtttagaaaatctgactcttagtttttttgcaggtagagttcttgatttgcttggtgctga  14954600         <-------TEIL                                                                          <-----      <------ZmHOX2a(1)                                                                        <-----    <---------TOE2(3)                                                           <---------GLK1(1)    <---------TOE1(2)                                                   ------>MYB83<---------ALFIN1    <---------TOE2(2)                  ----------->HVH21                ------>MYB46(1)        ------ --------->YAB1                      <---------ANAC55(2)              <---------MYB59          ------ <<<<<<<<ARR1                <---------ZAT18                          <---------MYB46(2)--------->ZAT14 >At4g35610                  --------->ZAT18               --------->REM1(2)    --------->GLK1(1) -At4g35610              <---------AHL20(2)------>ZmHOX2a(2)         --------->ANAC46 --------->ANAC46 <<<<<<<<ARR2  <---------LBD16       --------->ANAC46     ----------->HVH21     <---------At4g35610 < ------->GLK1(2)--------->LBD16      --------->ANAC55(2) <-----------HVH21      --------->At4g35610 <   caatcttaggatacatcccagggataatttatgcactatacgtgatcgtgtttcaaaaccgtgaaggctctaccgaacttggagctccacttaactcagc  14954700                        <------ZmHOX2a(2)                         --------->YAB1        <---------AtMYB61     <-----------RAV1(1)                --------->AHL20(2)  ------>ZmHOX2a(2) --------->ANAC55(2)                        ------>MYB83                         - ----At4g35610      --------->ANAC58                         <---------MYB59<----------DOF2        -- ----ZAT2           --------->ANAC58                       ------->TEIL    <---------ANAC58        <- --->ZAT2           --------->ANAC55(1)                <---------------AtSPL8            --------->ANAC55(2) --->At4g35610      --------->ANAC46                   --------------->AtSPL8        <---------AHL20(2) ---------AGP1   <---------REM1(2)               --------->ANAC55(2)       <---------ANAC58        -- ---------ARR11(3) <---------LBD16             <-----------GT1 ------>MYB46(1)     --------->ICU4  <-   ttgatctgttttggtccattacacggatcaatatgttgttgaaactgttttacttatcatgtaccaaataataagttgctttgcaatttttatgtattga  14954800  Previous    Next  AGI:  At4g30650.1    Description:  hydrophobic protein, putative / low temperature and salt responsive protein, putative. Identical to UPF0057 membrane protein At4g30650 [Arabidopsis Thaliana] (GB:Q9M095;GB:Q6IDS0); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G30660.1); similar to salt and low temperature response protein [Brassica rapa subsp. pekinensis] (GB:AAT11798.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) Range:  from: 14954326    to: 14954974    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version