Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          ------>ZmHOX2a(1)                                                                    <---------ICU4     --------->TOE2(3)                                                                  <---------ARR11(3)<---------ARR11(3)                                                              --------->YAB1   --------->At4g35610  -                 <---------ALFIN1                          --------->YAB1  --------->ANAC58        -- -ANAC58   ------->TEIL          --------->ANAC46       --------->YAB1     --------->ANAC46        <- -ANAC58<---------YAB1     <-----------GT1 ----------->GT1<---------YAB1   --------->ANAC58        --   gactcaactcatgaatcccaaacctgtttttacacacataagaaaatgtaataaacatttatgatcaaaatcatttcaagcagcaaaatcctaaacttgc  14929800           <---------ATHB51           --------->AHL20(2)           <---------AHL20(2)         --------->YAB1       --------->AHL20(2)       <---------AHL20(2) -------->YAB1 ------->ICU4     --------->ANAC58 --------ATHB12 ---------->DOF2<---------YAB1    --------->GLK1(2) ------->AHL20(2) --------->ANAC58              <---------GLK1(2)                         <-------TEIL   aataaatataaaaataattcaagcacaaaaaatgttattgtttgtttacagaatctctctaaaaatcaaacttggttaatgggttaagaacatccatcca  14929900                                                                                         --------->ANAC58                                                                                         ----------->GT1       <---------At4g35610                                                               --------->ANAC58     <---------WRKY18(1)                                                            <-------TEIL    --------->WRKY12                          <---------ALFIN1                  <---------------AtSPL8    ----------->HVH21                 ---------->DOF2     --------->LBD16      --------->DAG2    --------->WRKY45      ----------->GT1    --------->MYB46(3)              ---------->DOF2    --------->WRKY38(1) <---------LBD16    --------->ARR14(2)         --------->TOE2(3)--------->MYB52(1)  <-------GAMYB        --------->MYB52(1)  <---------ARR14(2)   --------->AtMYB61----------->GT1  ---   ttttcgttgacctgagaactcaaattgacggaaaaaacttgaaaggaaccacattttctccccaaaccaaaacatcaacaaaagggtacaaacgaaaaaa  14930000                                                                --------->ANAC58                                                                --------->ANAC46                                              --------->DAG2    --------->ANAC58           --------->KAN4(2)                                            ---------->DOF2    --------->WOX13(1)         --------->KAN4(1)                                  ------>ZmHOX2a(2)     ------->GAMYB                     <---------KAN4(1)                                 <------ZmHOX2a(2)      --------->YAB1                   <------ZmHOX2a(2)                                <---------ARR11(3)      --------->TOE2(3)               <---------ARR11(3)                                --------->ARR11(3)     --------->MYB46(3)               --------->ARR11(3)                                <---------ARR14(2)   --------->WOX13(1)   ----------->GT1<---------YAB1 ------>AHL20(2)                --------->ARR14(2)<-----------HVH21      <---------------AtSPL8   ctaaatacttgagttttcagcatgaaaacgagacgatcttaaacgagaaaggtgtcaaccaaaatcaagcaatgggaagtacaaaatgaagatcattcca  14930100                                                                                     --------->ANAC58                                                                                 <-----------GT1                                                                         ============================                                                                         ---------->DOF2                 --------->ICU4      --------->CCA1(2)             <---------TOE2(3) --------->ANAC46     <---------WOX13(1)             <---------ARR11(3)        *TSS<---------At5g28300--------->ANAC58   --------->ATHB12                 --------->ARR11(3)     <------ZmHOX2a(1)  ----------->GT1 --------->At5g28300 <------ZmHOX2a(1)             <----------ID1--------->MYB52(1)<---------ALFIN1   aacagtaattggctaagaaattaggagggaatgcaagagatataccagagaagaagacgaaggagaattacggtagaaagaagttacacgccaaatcaga  14930200                                   <---------ANAC46                                   <---------ANAC58                    --------->ARR11(3)            ----------->GT1 ------------>CBF                           --------->AHL20(1)   <---------O2         ----------->GT1                                <---------AHL20(1)   <---------TGA1a >>>>>>>>>TBF1   <---------ANAC58                 --------->AHL20(2)   ==============================bZIP_DOF  <------ZmHOX2a(1)  --------->At4g35610 ============bZIP_DOF ---------->DOF2--------->ALFIN1         <---------At4g35610               -----   cggagacgagagaagggtgaagaagaaagtgacaatggagtgggaggagacgaagtcgtttcacagatgaaaaaatattgattttgagagaaatatcaca  14930300                                                     <---------ZAT18                                                     --------->ZAT18                                                     <---------WRKY38(1)                                                    --------->TCP16(2)                                                   --------->ARR14(2)                                                   <---------PCF5                                                   <---------ARR14(2)                                                   --------->PCF2                                                 <---------DEAR3(2)                                                 <---------MYB46(3)              <----------DOF2                                                --------->ETT(1)             --------->ANAC58                                              <---------ARR14(2)             --------->O2                                              --------->ARR14(2)             <---------ANAC55(2)                                              <-----------HVH21              ===============bZIP_DOF                                            --------->LBD16                  <---------TGA1a                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->TGA1a                                          <---------LBD16                    <---------O2                                          --------->SPL7                     --------->ANAC55(2)                                        <---------SPL7<---------ALFIN1       --------->ANAC58                                        <-----------HVH21                 <---------MYB52(1)                                        ------>NtERF2<---------WRKY12     ----------->HVH21                                        <---------RAP2.6(3)               <------NtERF2                                       <---------ANAC46                  <-----------HVH21                                       <---------ANAC58                  <---------RAP2.6(3)                                       <---------ANAC58                  ------>NtERF2                                       --------->ATERF1(2)               <-----------TGA1                                     --------->SPL7<---------TCP16(1)   --------->bZIP60(1)         -                                    ------------------>SPL14            <---------bZIP60(1)       <--                        ---------->DOF2<---------ATERF1(2)              --------->ATERF1(2)       ---               >>>>>>>>>TBF1      <---------ANAC58 <---------TCP11(2)   <---------ATERF1(2)      ----       ------------------------>ANAC81 --------->DEAR3(1)               --------->RAP2.6(2)      ---- ----->DOF2 >>>>>>>>>TBF1         <---------ANAC58 <---------TCP20    ------>NtERF2      <-----------GT1   aagacagaagagaagaagaagaaactgaaagtgtctccgtgccgtccgggtcgggtccactctctctctctctgccgtcacgtctttcatttttctcaac  14930400            --------->AtMYB61            <---------MYB46(2)                                                    --------------->AtSPL8            <---------MYB111(2)                                                --------->AHL20(2)           --------->ANAC58                                                    <---------AHL20(2)           --------->ANAC58                                                <--------ATHB1           --------->ANAC46                <---------ANAC58                --------->ATHB51         --------->ANAC46                  <---------ANAC58                <---------ICU4        <-------TEIL                       <---------ANAC46                --------->AHL20(2)   --------->AHL20(2)                      <---------ANAC55(2)             <---------AHL20(2) -------->MYB52(2)                         <---------ANAC55(1)            <---------ATHB12 -------MYB52(1)               --------->AHL20(2)                         --------->ICU4 ------>DOF5.7(2) --------->ZAT14  <-----------GT1                        <---------ATHB51   -------- ----->TOE1(3)------>MYB83  --------->YAB1 --------->ANAC55(2)          --------->YAB1 -------------- ----->TOE2(3)------>MYB46(1)  <---------AHL20(2)              <----------DOF2<---------AHL20(2)   gttaattacatacaccaaactatagtctattaataaatcacagtttcgtgtttaagaaacataggctttatctacaataatttatatgtcccttataaga  14930500                                                 ------>ZmHOX2a(2)                                                --------->At4g35610                                                <---------At4g35610                                               <---------AGP1                                               --------->ARR14(2)                                               <---------ARR14(2)                                    <---------ANAC58                           --------->ANAC46    ------->TEIL                 <---------ANAC46 ->YAB1         ---------->DOF2     <---------ANAC46                       <------NtERF2            < ->AGL15      --------->ANAC46      <---------ANAC58          <-----------GT1             <----------   atgtctcaaaacatttacgaaagaaatatacacaacttgcttagggatggatctgaaaaacgtttttctctattggtgtcgaataccatttttaaccggt  14930600                                                                  --------->HSFB2a(2)                         --------->ARR14(2)        <---------ANAC58             --------->TOE2(3)                     <---------ANAC58               --------->MYB52(1)   --------->CCA1(2)     <---------ARR14(2)       <---------LBD16 <---------HSFB2a(2) --------->YAB1          ------->TEIL ----------->GT1            <---------LBD16<---------MYB59 ---------YAB1          <---------CCA1(2)     <---------KAN4(1)--------->GLK1(2)<---------MYB52(2) -GT1       <---------YAB1        <---------AHL20(2)   <-------TEIL   <<<<<<<<<<<<<<<<<LFY   ttatgatatggtttaccatagagtttgtatctgttttaaattgtaagaatattgcggttcataagactctggaaacagtggaactaactaatctaggtct  14930700  Previous    Next  AGI:  At4g30560.1    Description:  ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Putative cyclic nucleotide-gated ion channel 9 (CNGC9) [Arabidopsis Thaliana] (GB:Q9M0A4); similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5), calmodulin binding / cyclic nucleotide binding / potassium channel [Arabidopsis thaliana] (TAIR:AT5G57940.1); similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5), calmodulin binding / cyclic nucleotide binding / potassium channel [Arabidopsis thaliana] (TAIR:AT5G57940.2); similar to ATCNGC6 (CYCLIC NUCLEOTIDE GATED CHANNEL 6), calmodulin binding [Arabidopsis thaliana] (TAIR:AT Range:  from: 14926980    to: 14930162    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g30570.1    Description:  GDP-mannose pyrophosphorylase, putative. similar to CYT1 (CYTOKINESIS DEFECTIVE 1), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT2G39770.1); similar to GDP-mannose pyrophosphorylase [Malpighia glabra] (GB:ABB53473.1); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) Range:  from: 14930683    to: 14931957    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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