Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->At4g35610                              --------->GLK1(2)                                --------->ALFIN1                              --------->ARR14(2)                         --------->ANAC58                              <---------ARR14(2)                         --------->ANAC58                          ------>ZmHOX2a(2)                            --------->MYB52(1)                         <------ZmHOX2a(2)                            ----------->TGA1                        <---------ARR11(3)                          <---------At4g35610                        --------->ARR14(2)                          --------->At4g35610                        --------->ARR11(3)                          ----------->RAV1(2)  --------->At4g35610                       <---------GLK1(1)                            <---------ZAT2       --------->ZAT2                     <------NtERF2<---------At4g35610               --------->ZAT2       <---------At4g35610       <---------WRKY12--------->GLK1(1)                         <---------ANAC58        <---------ZAT2      <---------MYB52(1)<---------ARR14(2)                       <---------ANAC58       --------->ARR14(2)     <-----------HVH21----------->ARR10                         --------->MYB52(2)      <---------ARR14(2)     --------->LBD16--------->LBD16 <---------ALFIN1          <---------MYB52(1)  --------->ALFIN1   <------NtERF2  <---------LBD16--------->ANAC46             --------->DOF5.7(2) <---------ANAC46--- --------->ARR14(2)<---------ANAC46<---------MYB52(1)    --------->TOE2(3)     <---------AtMYB61  --- --------AGL1------->TEIL--------->CCA1(2)            <-----------GT1 ----------->HVH21<------ZmHOX2a(1)   caggctccgtcaatgtatttggcggagatccgaatccgctacctccaatactcttgttaccttcgttacctgctgacggaagtggtggaggagctggaac  14818500                                                                                                -----                                                                                                =====                                                                                               <-----                                                                                               ======                                                                                              -------                                                                      <------ZmHOX2a(1)       <------                                           <---------MYB46(3)         ===============================                                           --------->MYB55(2)         ===============================          <---------YAB1                  --------->ALFIN1        --------->ALFIN1       --------->MYB52(1)      <---------DAG2             --------->ALFIN1            --------->MYB52(1)         <---------SPL7   <---------ALFIN1   <------ZmHOX2a(1)<---------DEAR3(1)   <---------SPL7              ----------->HVH21 ------>ANAC58     <------ZmHOX2a(1)   --------->ALFIN1    --------->MYB46(3)        --------->MYB52(1) ------>ANAC58--------->ALFIN1<---------DEAR3(1)           <---------MYB52(2)      --------->DEAR3(2)   aggcatcaccttctgagtggaggaggaagacgacggtggaagcggtgggagattggattgaacgaacggtgaggatgaaacgggaatcgacggacggatc  14818600                                    --------->ATHB12                              ----------->HVH21                             --------->LBD16                            --------->ANAC55(2)                            <---------ANAC58                            <---------ANAC55(2)                            <---------ANAC46      <---------MYB46(3)    <---------LBD16     <---------AtMYB61      <---------ANAC58     --------->ALFIN1       --------->HSFB2a(2)                                                     <  <---------DEAR3(1)        <---------HSFB2a(2)                                                   --- ->ZmHOX2a(2)              <---------LBD16                    --------->TOE2(3)             <-------- ======================HOX2a_HOX2a <---------YAB1          --------->ARR14(2)             --------->ATHB12 -ZmHOX2a(2)             --------->ARR14(2)                <---------GLK1(2)             --------->ICU4 ======================HOX2a_HOX2a<---------MYB59          <---------ARR14(2)          <---------At4g35610 -->ARR14(2)             <---------ARR14(2)      <---------ANAC58                  <---------WOX13(1) ---ARR14(2)          --------->ANAC58           <---------ANAC58                --------->ATHB12---- ==HOX2a_HOX2a        --------->ANAC58<---------WOX13(1)--------->YAB1          <---------YAB1------- =HOX2a_HOX2a   <------ZmHOX2a(1)<---------At4g35610 --------->YAB1      <<<<<<<<<WRKY18 <---------YAB1   ggactcggtggtcgagcaggaagcacggttccgggacctgattgaaaactgtcgttcatcatattctcaatctcgtcaatgtctgattgagatgattgat  14818700                                                                    <-------GAMYB                                                                   --------->MYB52(2)    --------->MYB52(1)                                                                   <---------MYB46(3)   --------->ARR14(2)                                                                <<<<<<<<<<MYB80         <---------ARR14(2)                                                         --------->LBD16             --------->LBD16                                                       <---------LBD16              --------->LBD16    <---------ARR14(2)                               --------->GLK1(2)     <---------AHL20(2)    --------->ARR14(2)                              --------->ARR14(2)    --------->AHL20(2) ---------LBD16                            --------->ARR11(3)  <---------MYB46(3)   <---------LBD16 ------>DAG2        ----------->RAV1(1)  ----------->ARR10 ----------->HVH21       <---------LBD16--- -WOX13(1)         ----------->HVH21 --------->LBD16<---------ARR14(2)    <---------AHL20(2)  <------ ------>DOF2  <---------MYB52(1)   <---------LBD16  <---------GLK1(2)    <---------WOX13(1)   ------- -->YAB1 <---------CCA1(2)  <-----------GT1<---------ARR11(3) <---------AtMYB61   <---------LBD16 <--   aaagcggaatcgtatcgttgtgcgacattttttcttcaccggagagatattgaagattccggtgatggtttgttgatttatttttcccgggaaacggatt  14818800                                       ----------->HVH21                                      ------>ZmHOX2a(2)                                     --------->CCA1(2)                                     <------ZmHOX2a(2)                                    --------->AGP1                                    <---------ARR14(2)                                    --------->ARR14(2)                                    <---------ARR11(3)                                    --------->ARR11(3)                                --------->AHL20(1)                                    <---------AGP1                                   --------->YAB1 -         <----------DOF2            <-----------ARR10                                --------->AHL20(2)    ---------->DOF2            --------->CCA1(2)                                   --------->AHL20(2) ------>MYB59               <---------TOE2(3)                                --------->YAB1         - ---ARR14(2)     <---------LBD16   <---------CCA1(2)                        <---------YAB1 --------->AHL20(2) -->ARR14(2)--------->ATHB12<---------YAB1                               <---------DEAR3(1)<---------AHL20(2) -------TOE2(3) --------->ALFIN1<-------TEIL                *TSS ---------->DOF2--------->AHL20(2)  <   taggtcaaaagctttgatttgggggaaattaagattcagatctgacgaagaagagaagtcgaaattacaaagagggcgatgataaaataatattaaaata  14818900      <---------ANAC58      --------->ANAC58      <---------ANAC46      --------->ANAC55(2)      <---------ANAC55(2)      --------->ANAC58      <---------TGA2(1)      <---------ANAC58      <---------bZIP60(1)      --------->TGA2(1)          <---------DEAR3(2)      --------->bZIP60(1)    <---------bZIP60(1)                             <---------AHL20(2)     ----------->STF1        --------->bZIP60(1)                            <---------AHL20(2)   ----------->HVH21         --------->O2                                   --------->AHL20(2)   ----------->TGA1          <---------O2  <---------ARR11(3)               <---------AHL20(1)  <-----------HVH21       --------->ANAC46 --------->ARR11(3)        <------MYB83  <---------TOE2(3) --------->ALFIN1    --------->ANAC46     --------->CCA1(1)          <------MYB46(1) ------>MYC3        --------->TOE2(3)     --------->RVE1(1)          ----------->GT1 -------->TOE1(2)   --------->TOE1(3)--------->YAB1     ---------->DOF2 >>>>>>>>>GT-1            <--- -------MYC3       XXXXXXXXXXXXXXXXXXXX>MIR4228       <---------YAB1 <---------MYB46(3)      <-------   aacgtgtgacgtaatgttcttaccctaaacgacgtcgtttcataatatctcattctatgaaagcatgcgattggttaataaaattgagataaaactcagg  14819000                                                                      >>>>>>>>>>AGL24                                                                      -------->ATHB1                                                                      --------->ATHB51                                                                      <---------ICU4                                                                      --------->ATHB12                                                                      <--------ATHB1                                                                      --------->YAB1                                                                      >>>>>>>>>>AGL20                                                                      >>>>>>>>>>AGL22                                           <---------AHL20(2)        <---------ATHB12                                          <---------AHL20(2)         --------->ICU4                                          --------->AHL20(1)         <---------ATHB51                                          <---------AHL20(1)       <---------------AGL15                                          --------->AHL20(2)      <-----------------AGL3                                      --------->AHL20(2)     <---------DAG2                                     --------->AHL20(2)      <----------DOF2                        -        <---------YAB1             --------->YAB1           <---------DAG2                       <--- -----P <---------AHL20(2)        <---------YAB1          ---------->ID1           ---------->DOF2  < ----RAV1(2)              <-------TEIL<---------AHL20(2) <-----------GT1    <xxxxxxxxxxxxxxxxxsmallRNA(si3)   tagagagttttttattgtaagtttttgatacattctataataaataaaatttgatattttgacctttttcaataattggatttgaaaaagaagcattcaa  14819100                                           <---------AHL20(2)                                           --------->AHL20(2)                                     <---------YAB1                                     <---------ANAC55(2)                                     <---------ANAC46                                  --------->ICU4                               --------->AHL20(1)                               --------->AHL20(2)      --------->YAB1           <---------AHL20(2)                                                  >>     <---------YAB1           <---------AHL20(2)                     <---------AHL20(2)         >>>>> ------>MYC3                  --------->AHL20(2) --------->DAG2  --------->YAB1       ---------->DOF2 ------ALFIN1             --------->AHL20(2)    ---------->DOF2 <---------YAB1       ---------------- -------MYC3            ----------->GT1 ------->TEIL       ------->TEIL       <---------YAB1 >>>>>>>>   cacgtttatcatatttcttacaatgtaagtaaattaattatgtatatatataaagcaaatgaaactatcattttttttttatgagaaaaaaagaagaaga  14819200                                                                                                  ---                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               ------               <---------ICU4                                                                 <------              --------->ICU4                                                                  <------              <---------YAB1                                       <---------ARR11(3)         <------            --------->YAB1   <---------AHL20(2)                    --------->ARR11(3)         -------  ---------->DOF2 --------->YAB1          --------->AHL20(2)      <---------CCA1(2)           <------ >>>>>>>TBF1<--------HAHB4  <---------AHL20(2)                <-----------GT1                 ======= >>>>TBF1   <---------ICU4  --------->AHL20(2)          <----------DOF2               --------->bZIP60(2) -------->ANAC81 <---------YAB1    <-----------GT1   --------->ARR11(3)        ---------->DOF2------- >TBF1     <---------YAB1   <---------AHL20(1)       <---------ARR11(3)  --------->YAB1  <---------ICU4   agaagaaagaactatcattatcataaacaattttttttaacaaataaaacagggacatctttttatacatatctataagagtaaagacacatcatttcct  14819300          <---------ARR11(3)          --------->ARR11(3) ------>ATHB12 ------DOF2--------->CCA1(2) ----------AGL15 --------->AGL15 --->TOE2(3)                                      --------->TOE1(1) -----------AGL1                                 <---------LBD16 -----------AGL3                                 <---------HSFB2a(2) -----------AGL2            --------->YAB1       --------->HSFB2a(2) ---------->AG            ------------------------>ANAC81        --------->ANAC58            -------- -----------AG       ---------->DOF2          --------->GLK1(2)  --------->ANAC58            <------- ==================================================================================================== ---------->AGL1   ------->GAMYB       ---------->DOF2  <---------YAB1             --------->YAB1 ---   ttattggacaaagatatacaacgaaaagaatcaaaaacagaaaaagaaattctcggacataatagacaagctataaacagagcattcacaattttcacat  14819400  Previous    Next  AGI:  At4g30260.1    Description:  integral membrane Yip1 family protein. similar to integral membrane Yip1 family protein [Arabidopsis thaliana] (TAIR:AT2G18840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43242.1); contains InterPro domain Yip1 domain (InterPro:IPR006977) Range:  from: 14816628    to: 14818860    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g30270.1    Description:  MERI5B (MERISTEM-5); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase. Identical to Xyloglucan endotransglucosylase/hydrolase protein 24 precursor (XTH24) [Arabidopsis Thaliana] (GB:P24806;GB:O64956;GB:Q39148;GB:Q39149;GB:Q41904;GB:Q8LDQ0); similar to TCH4 (TOUCH 4), hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana] (TAIR:AT5G57560.1); similar to putative xyloglucan endotransglycosylase [Cucumis sativus] (GB:CAD87535.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); contains InterPro domain Glycoside hydrolase, family 16, a Range:  from: 14819198    to: 14820598    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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