Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ---------->DOF2               <---------ARR14(2)               <---------ARR14(3)               --------->GLK1(2)               <---------ARR11(3)               --------->ARR11(3)               --------->ARR14(3)              <------ZmHOX2a(1)                                       <---------ANAC46            <---------TOE1(3)                                 ------>ZmHOX2a(2)   <------NtERF2<------ZmHOX2a(2)     --------->MYB52(1)    --------->ARR11(3)  --------->LBD16     <---------At4g35610                   <---------AGP1 <---------ANAC46     --------->At4g35610                 ----------->ARR10 --------->ETT(1)------>ZmHOX2a(2)  --------->MYB46(3)  <----------DOF2 ---------LBD16--------->ARR14(2)  --------->ANAC58  --------->ARR11(3)      --------->ARR14(2) -->DOF2    <---------TOE2(3)      --------->ANAC58  <---------ARR11(3)      <---------ARR14(2)   ttgccggagacattaaggatcttgagcttagaaagacaaccaatggagtttggaagagctttgatctggtttgagtgaatatccaatgctatcaagttga  14608000                                                                            --------->KAN4(2)                                                                           <----------TaMYB80                                                                          ------->TEIL                --------->GLK1(2)                                         --------->ARR14(2)                <---------ARR14(2)                             --------->TOE2(3)<---------YAB1               <---------GLK1(2)  <---------YAB1        ---------->DOF2   <---------ARR14(2)        <-------GAMYB<---------MYB52(1)             --------->LBD16    ----------->GT1    <---------YAB1   gtaatcttgctgttagagattctggtattttctgttacaattcatagacaaacccccaaaaagaacattagaaacgtatattctgactgtgtatgagtgt  14608100                        >>>>>>>>>ARR2                        >>>>>>>>>ARR1                       --------->ATHB12   <---------ANAC58              <---------ARR14(2)          -                      <---------YAB1 <------ZmHOX2a(2)                  --------->ARR14(2)          -               --------->TOE2(3)    --------->ARR11(3)   --------------->AGL15                 ------             ------->TEIL <-----------RAV1(1)            <---------------AGL15                 ------        --------->CCA1(2) <---------MYB46(3)            ----------------->AGL1                 ------       --------->ARR11(3)<---------YAB1   <---------ANAC58             <------ZmHOX2a(1)       ------       <---------ARR11(3)<---------WOX13(1)             ----------------->AG                   ------   atgcatagagatatgaaccttgatatgattgttggagagatcaagcttgcaaatatttgccaaattgagggaaggatttgggagagattgtaatgccatg  14608200        <-----------GT1 -------->ANAC58                                                             --------->ALFIN1 -------->ANAC58                                                         ---------->DOF2      <------ --->ANAC58                                                          ----------->GT1      <---------MYB46(3) --->bZIP60(2)                                                       <------MYB83        --------->ALFIN1 --->ANAC46                                 <---------YAB1        <------ZmHOX2a(1)<---------YAB1 --->AtLEC2                         <---------YAB1              <---------TOE2(3)  --------->ICU4 --- --->ANAC58                   ------>ZmHOX2a(1)       <----------DOF2<------MYB46(1)  <---------AtMYB61   ccactcaaattcacaacctctagtctctcttcctcgttgttattgtatgatggtgactttggcgataaggatggtgaaagtggtgatgatggtggtgatg  14608300                --------->ATHB12                <---------ICU4               <---------YAB1               --------->ICU4             --------->YAB1        <----------DOF2             <---------ICU4        ------>ZmHOX2a(1)            <---------YAB1 --------->ANAC55(2)          --------->YAB1   <---------ANAC55(2)       --------->WOX13(1)<---------ICU4                       --------->GLK1(1)      <----------DOF2      <-------TEIL    --------->YAB1             <---------WOX13(1)         <---------CCA1(2) -----------------TaNAC69(2)     ------>ZmHOX2a(2)  <---------ANAC46        --------->GLK1(1) ---->TEIL<---------ICU4--------->ICU4        <---------AHL20(2)   ------->TEIL--------->YAB1      <-   tactcaagtccatcatcatcattgtcatcatgtgatccttttgtccatgtaattgctgatactgatatgcatcttcgcatatcatcgttttatgtgtgtt  14608400                                                                   ----------->RAV1(1)                                                             --------->YAB1                                                             <---------ICU4                                                         <---------------AGL15                     ----------->GT1                     --------------->AGL15                  <---------ICU4                        <-----------------AGL3             <---------ANAC46                 <---------YAB1        --------->ATHB12 <-----------------AGL1             <---------YAB1              <---------YAB1          --------->ICU4 ------>ZmHOX2a(2)              <------ZmHOX2a(1)         ---------->DOF2       <---------bZIP60(2)  <---------At4g35610             =================      <------ZmHOX2a(1)     --------->ICU4   <---------YAB1 <---------YAB1        <---------TOE2(3) --------AtLEC2--------->YAB1  <---------ANAC46    <---------ARR11(3)<---------ALFIN1      <---------ANAC55(2)   tgtatggaggaaaaagatgataatggtgaaatgatgtggaatgagtgattcttgatctgcttataatggcaacacagagagattaaggaggttatgtatg  14608500                                                                <---------TOE2(3)                                                                <---------TOE1(3)                                                             --------->ICU4                                                    --------->ATHB12                                                    <---------ICU4            ----------->GT1                                                   <---------YAB1            --------->DAG2                                                   <---------ATHB12        ---------->DOF2         --                                                   --------->ICU4        <---------YAB1         <----        --------->TOE2(3)                         <---------TOE2(3)    --------->AHL20(2)  <---------REM1(1)        <----------DOF2                         <---------AHL20(2)    --------->ICU4     --------->At4g35610  <------ZmHOX2a(2)<------------CBF     <---------LBD16 ----------->GT1--------->YAB1 --------->At4g35610 ========HOX2a_HOX2a          --------->ICU4    --------->AHL20(2)<------ZmHOX2a(1)   <---------At4g35610   gacgatcaaactttagtgggaaattgaaggaaatgaatactcttcggaaattaatgatttgtaattaaggaaattataaaaggtgattagctgatgaagg  14608600               <------NtERF2              ------>NtERF2             --------->RAP2.3(3)             --------->DEAR3(1)            --------->ATERF1(1)           <-----------HVH21           <---------ATERF1(1)                                  <---------ATHB12          <---------ANAC58                                 --------->LBD16                   --------          <---------ANAC58                                --------->ANAC58                  --------- --------->ARR14(2)                                       --------->ANAC58               --------->AHL20(2) <---------ARR11(3)                                       --------->ANAC46          --------->AHL20(1) <---------GLK1(2)                                       <---------LBD16            --------->AHL20(2) --------->ARR11(3)                                    -------->P    --------->YAB1 <---------AHL20(2) <---------ARR14(2)                   ------>ZmHOX2a(2)--------->MYB52(1)      <---------AHL20(2) --------->ARR10                  ----------->HVH21 --------->At4g35610        --------->AHL20(2) --ZmHOX2a(1)--------->RAP2.3(2)----------->RAV1(2) <---------At4g35610  ----------->GT1--------->AHL20(2)   agagatactcatgcgtcgccaagtttttctaaacacctgatcgaaaaatgttagagctacccgcaaatcactcataagtaaaaaaataaaataaaaaagt  14608700                                                                                          <---------AHL20(2)                                         <---------GLK1(2)                            --------->AHL20(2)                                      --------->YAB1                     <-------GAMYB--------->ICU4                                   --------->YAB1                       <---------ANAC46  --------->AHL20(2)                               <---------AHL20(2)           --------->YAB1            <---------ATHB51   --------->AHL20(2)         --------->AHL20(2)           <---------ATHB12      ----------->GT1  --- ->DAG2                       <---------AHL20(2)     <-----------GT1    ----------->GT1<---------ICU4 ->DOF2           <----------DOF2 <---------YAB1  ----------->GT1  <-----------RAV1(1)<---------AHL20(2)   tcccataaatttcatttcaactttgagactaattttataatcagagtctgaaatgtaacaaatcaaaatttgtggggttaaaacagaaataattaaaaat  14608800                                                                                           <------NtERF2                                                                                          -----------                                                                                          ------>NtERF2                                                                                         --------->ETT(2)                                                                                    <---------DOF5.7(2)                   --------->ANAC58                                                 --------->MYB52(1)                   --------->ANAC58                                              --------->TOE2(3)           -------->HAHB4                                               <---------ICU4   ----------->HVH21           <--------ATHB1                                               --------->YAB1 ------->GAMYB<           <---------ICU4      ----------->HVH21                       --------->ICU4  ==============          <---------ATHB51   --------->At4g35610                 ----------->TGA1--------->TOE1(3) <-          <---------YAB1     <---------At4g35610                 ----------->HVH21--------->DOF5.7(2)          --------->ICU4<---------ZAT2    --------->At4g35610  --------->LBD16  --------->ANAC58   --        --------->YAB1 --------->ANAC58*TSS                  <---------LBD16    --------->ANAC58  <--     ----------->GT1   --------->ANAC58<------ZmHOX2a(2)   <---------ARR14(2)   --------->ANAC46 <--- ------>ANAC46   ---------->DOF2      <---------ARR11(3)   --------->ARR14(2) <---------ALFIN1 ------   atgccacttgtaataattccaaagcaagctctggtgacacgatcatcggaacaaaatagagtacccggtgacgatgatgaccacgttaacggcgacagtg  14608900  Previous    Next  AGI:  At4g29880.1    Description:  protein binding. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G19330.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71340.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 14607084    to: 14608385    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g29890.1    Description:  choline monooxygenase, putative (CMO-like). Identical to Choline monooxygenase, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SZR0;GB:Q0IGK3); similar to unnamed protein product [Vitis vinifera] (GB:CAO43181.1); contains InterPro domain Aromatic-ring-hydroxylating dioxygenase, alpha subunit; (InterPro:IPR001663); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) Range:  from: 14608839    to: 14611004    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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