Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->WOX13(1)     <-----------GT1                       --------->GLK1(2) <---------At5g28300  --------->YAB1            --------->AHL20(2)  <---------At4g35610                                 - ---------->AGL15           <---------AHL20(2)  --------->At4g35610                        --------->YAB1 -----MYB59         ------>MYB46(1) ------>ZmHOX2a(1)  <---------ATHB12                 ---------->DOF2 ----GT1            ------>MYB83   --------->TOE2(3) --------->GLK1(1)        --------------->AGL15 <   aaaattataacataacttcaccaaatctaaaaaaattcctaaaacaatctagctgaaatcaattactgttttctaaatctctcaaactagcaaagataag  14602600                 <---------GLK1(1)                                                                  <            --------->YAB1                                                                        <--     --------->ARR14(2)                                               ----------->GT1            <---     <---------ARR14(2)                                    --------->ICU4                     <------NtERF2     <---------GLK1(2)                          <---------ATHB12     --------->DAG2         <-------- ---------->RAV1(1)            --------->ANAC46 --------->AHL20(2) ---------->DOF2     <---------ANAC58 ---------ALFIN1 --------->GLK1(1)          <------ZmHOX2a(2)<---------ANAC55(2)       <---------ANAC58   tcccacatattctctcatgaattcccaatttctactccaagactggatcaataaatgtggaataagtaagaaaggtgaagaaatcgctaccgtggcctcg  14602700                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 <---       -------->P                                                                            <-------      ------>NtERF2                                                                          --------     <---------ALFIN1                                                          --------->ZAT18   <---     --------->DEAR3(1)                                                  --------->LBD16------>ZmHOX2a(1)   ------>NtERF2                                                        --------->DEAR3(1)   <-------  --------->DEAR3(1)             --------->LBD16                       <------NtERF2------>ZmHOX2a(2)  --------->ANAC46--------->ANAC58                                    <---------At5g28300   <--------  --------->DREB2C(2)          <---------LBD16                    --------->ANAC58 --------->GLK1(1) ---------At5g28300    --------->AtLEC2           --------->ARR14(2)  ------>NtERF2<------ZmHOX2a(2) ----ZmHOX2a(2)   --------->ANAC58            <---------TOE1(2)   --------->ANAC58 <---------GLK1(1)< --------HVH21    --------->ANAC46           ------>ZmHOX2a(1)  ---------->DOF2<---------ZAT18  <---- -ANAC46      --------->YAB1  --------->MYB52(1)  <---------ARR14(2) --------->DEAR3(1) <-----------HVH21   atcaccgccaactcgattataagccatgaagaaaccggagacaattcctagggttccgaacacgagtaaagccaccgcgagtgcgatctccttcaccggc  14602800    <---------MYB46(3)   <---------MYB52(1)  <-------GAMYB                                                        --------->ANAC46 <------MYB46(1)                                                       --------->ANAC58 <---------MYB46(3)                                                    --------->ANAC58 <---------DEAR3(2)                                                   ------->TEIL <------MYB83                                                       <---------SPL7 --------MYB55(1)                                                 <---------------AtSPL3        ----- -----GAMYB                                                       --------------->AtSPL3      <------ZmHOX2a(2) ---------HVH21                                         --------->ANAC58                   --------->LBD16 ------SPL7                                        <---------HSFB2a(2)<-------TEIL        --------->HSFB2a(2) ------DEAR3(2)                         --------->TOE2(1)       <---------WRKY38(1)       <---------HSFB2a(2) --DEAR3(1)                             --------->TOE1(1)       <---------WRKY12         <---------LBD16 ->DEAR3(1)                            ------>ZmHOX2a(1)--------->ANAC58       <-----------GT1======= ------MYB46(3)                 <---------ICU4     --------->HSFB2a(2)--------->SPL7 --------->ZAT2 < --ATERF1(2)                 --------->YAB1   <---------MYB52(1)--------->ETT(2)     <---------ZAT2 - -LBD16   <---------DEAR3(1) <---------ICU4--------->SPL7       <---------DEAR3(1)   --------->At4g35610 ---------DEAR3(1)          <---------ATHB12  --------->DOF5.7(2) --------------->AtSPL8--------->MYB52(1) -----DEAR3(1)            --------->WOX13(1) <-------GAMYB      <---------ETT(2)     <---------At4g35610   ggtcggttattgacggtgtatgaagtctcaatcataatgtcctcgtccgttatcgagaacgcatggtcgacgtacgccattttacacagcttccggatca  14602900                           <---------HSFC1(1)                           --------->HSFB2a(2)                           <---------HSFB2a(2)                         <------ZmHOX2a(2)                        <---------ARR14(2)                        --------->ARR14(2)                --------->YAB1                <---------ICU4               <---------ATHB12                      ------>ZmHOX2a(2) =========================HOX2a_HOX2a              --------->ARR11(3) <------ZmHOX2a(2)      --------->AGP1        --------->ATHB12             <---------------AtSPL3 ----->DOF2  --------->WOX13(1)  ---------->DOF2<---------WOX13(1)         --------------->AtSPL3 --- =========================HOX2a_HOX2a     ----------->TGA1       ---------->DOF2               <----- ---------ARR11(3) =============HOX2a_HOX2a  <---------YAB1   <---------HSFB2a(2)            -------- -------->ARR11(3) <------ZmHOX2a(1)--------->At4g35610       --------->HSFB2a(2)<---------ZAT6------   aagatcaatgggaaacaatcaggaccgatctagaagaaagcagaatgacgattgatctagagctcgagaaagatgaaatcgtactgtttgaattttaggt  14603000                                        <---------ANAC58                                        <---------ANAC46                                        <------MYB46(1)                                        <---------ANAC58                                        <------MYB83                             <---------ANAC55(2)                             <---------ANAC46                             --------->ANAC55(2)                          ----------->HVH21                    ----------->HVH21  <---------MYB46(3)                   --------->SPL7      --------->MYB59                  ------>ZmHOX2a(1)    <---------AtMYB61                 --------->TOE1(2)     --------->MYB111(2)  <---------At4g35610     ----------->TGA1                      ----------->GT1 -------------------->TaNAC69(2)       --------->MYB46(2)<----------DOF2 ----ARR11(3)    *TSS    <-----------HVH21            <---------ARR11(3)   --------->ANAC46 ->MYB59 <---------YAB1<---------DEAR3(1)        ------------>CBF    --------->GLK1(1) <---------YAB1 --->ARR11(3)    --------->TOE2(2)     --------->MYB111(1)  <---------AtMYB61 --------->MYB52(1)   cttcagatgttatgagtctcctacgacggtgacggattagtttggtgcaaatgcaatttcttttggtcgtgaaatctactcaacgtactatgattcaaac  14603100                                          <---------ANAC58                                          <---------ANAC58                                       --------->TOE2(2)                                       ------->MYC2                                       --------->TOE1(2)                                       <-------MYC3                                       ------->MYC3                                       <-------MYC2                                       <-------PIF5                                       ------->PIF5                                       ------->MYC4                                      <---------ANAC58                                      <---------ANAC58                                      <---------HSFB2a(1)              <---------YAB1--------->MYB52(1)             --------->KAN4(2)--------->ANAC46            <---------KAN4(1)--------->RAP2.6(3)                                              <------           <---------YAB1  --------->ARR14(2)                         <---------ZAT18         -------    <---------ANAC46       <---------ARR14(2)                         --------->ZAT18    ----------->GT1   <------NtERF2         --------->LBD16--------->ALFIN1          --------->ATHB12 <---------MYB52(2)  <-----------HVH21    <-----------------AGL1                    <---------ATHB12  --------->MYB46(3) --------->ANAC46<----------DOF2    <---------ARR14(2)  <---------ATHB12         <-----------GT1   tacgcgtcgtttgattattcttttctccgaaaacggcagaacgtgcgagtttgaacaaatcaaactaatcagtgggctatatataacaaaccagaaaata  14603200                                                                                                  <--                                               <---------------AGL15                              ===                                               --------------->AGL15                             <---                               --------->bZIP60(1)                                        --------->TOE2(3)                               --------->TGA2(1)                                          --------->TOE1(3)                          --------->YAB1      ----------------->AG  --------->ANAC58      --------->YAB1                          <---------ICU4      ----------------->AGL1--------->ANAC58   ------>MYB46(1)                         --------->ICU4     <-----------GT1      --------->WRKY18(1)   ------>MYB83       <-----------GT1   <---------YAB1------->TEIL         <-------TEIL             <---------MYB59 ---ARR14(2)    ---------->ID1 <---------bZIP60(1)         --------->GLK1(2)   --------->AtMYB61 ---- -->ARR14(2)<---------MYB52(1) <---------TGA2(1)           --------->CCA1(2) >>>>>>>>>>MYB80 --------   ctctctgtttttccatttgtttttttgatgatgacatcatgtatatttaccaattcaagagattcaggtcaagaaatcaaaccaaaaccgaaccataaag  14603300                                                                     <---------At4g35610                                                                     --------->At4g35610                                                                  <---------MYB52(1)                                                              ------>NtERF2                              --------->LBD16                --------->ANAC58                    --------->CCA1(2)                        --------->RAP2.6(2)                   --------->ARR11(3)                        --------->ANAC58       <----------DOF2       <---------HSFB2a(2)       --------->ANAC58 ----ZmHOX2a(2)    --------->ARR14(2)         ------->TEIL   --------->ANAC46 ========================HOX2a_HOX2a     --------->At4g35610--------->SPL7 ------ARR11(3)    <---------ARR14(2)------------>AtMYB77  <---------ATERF1(1)                      < ----->ARR11(3)   <------ZmHOX2a(1)  ----------->RAV1(1)  --------->DEAR3(1)                        - -->DOF2    <---------LBD16  --------->HSFB2a(2)       --------->ANAC58--------->ZAT18   <------ZmHOX2a(1)   atcagagagatttatggggaggatatagtttccagagagcaacagttgcatcttcagacgcagacgccattagctcacagtctggagagtaggacacagc  14603400     --------->ZAT14                     --------->CCA1(2)                                        <-- ---------ZAT14                         <---------ARR11(3)                                       <--- -------->ZAT14      --------->RAP2.6(3)--------->ARR11(3)                               <-----------GT1   gttgcactgcaaacaaaacacatgaaggcatcaaaatacaaagatttagaaaatggttgtctctcaactgttgaaccagtctaagaaattttcacatacc  14603500  Previous    Next  AGI:  At4g29850.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19350.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75495.1); contains InterPro domain Protein of unknown function DUF872, eukaryotic (InterPro:IPR008590) Range:  from: 14601627    to: 14603017    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g29860.1    Description:  EMB2757/TAN (EMBRYO DEFECTIVE 2757); nucleotide binding. similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G11160.1); similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G50230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61040.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 14601704    to: 14605802    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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