Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                             <-------                                                                                    ------>ZmHOX2a(2)                                                                                   <---------GLK1(1)                                         --------->ANAC58                          --------->GLK1(1)                                    ------->GAMYB --------->ANAC58                --------->ARR11(3)                             --------->WOX13(1)   --------->ANAC46         <-----------HVH21<--------                  ---------->CDC5   --------->YAB1--------->ANAC58        <---------bZIP60(1)<-------               --------->At4g35610 --------->MYB46(3)                     --------->bZIP60(1)<-------            --------->At4g35610   -------->P  <---------YAB1         <---------ANAC46   ------>ZmHOX2a(1) --------->DEAR3(2)    ----------->GT1   --------->ANAC58    <---------ANAC58     <---------ARR11(3)- ----DOF2   <---------At4g35610  --------->WOX13(1)          <---------ANAC58    --------->ZAT14 ----   tgaaccgaagtagtagctgctaagcgggtataaatcaaccatcaagtcatgaacgacatcgtttcgtctcgtcgtgttgtcactgatctcctccatatct  14597300 ->ARR14(2)                                                      <---------ATHB12--------->MYB52(1) --ARR11(1)                           ---------->DOF2       ------>ZmHOX2a(2)<---------AHL20(2) -CCA1(2)                    --------->LBD16               <------ZmHOX2a(2)--------->AHL20(2)     -- --ARR11(3)                 ----------->GT1          --------->DAG2         <---------AHL20(2)     <- ----ARR10                  --------->ANAC58        ---------->DOF2     <---------YAB1             <- ------>GAMYB               --------->ANAC46    --------->At4g35610    --------->AHL20(2)     ------- ----->MYB52(1)             --------->ANAC58    <---------At4g35610    <---------AHL20(2)     -------   aacgctcgagcttcttcacccattttctgcccgtaaaattcaaagacgagagctaaaagcgatctcaatcgattaaaattaaataacagagagaccacga  14597400                                                                ------>NtERF2                                                               <---------ARR14(2)                                                              <------NtERF2                                                              <---------At4g35610                                                              --------->ATERF1(1)                                                              --------->At4g35610                                                              --------->RAP2.3(1)                                                             <<<<<<<<<AtERF-3                                                             <<<<<<<<<AtERF-5                                                             <<<<<<<<<AtERF-7                                                             <<<<<<<<<AtERF-4                                                             <---------RAP2.3(1)                                                             <---------RRTF1(1)                                                             <---------ERF1                                                             <<<<<<<<<AtERF-2                                                             <<<<<<<<<AtERF-1                                                             <---------ATERF1(1)                                                             <---------ORA47(2)                                                             <---------DEAR3(2)                                                             ------>NtERF2                                                            <---------RRTF1(2)                                                            <---------RAP2.6(2)                                                            <---------RAP2.3(3)                                                            <---------ATERF1(2)                                                            <---------DEAR3(1)                                                            --------->ATERF1(2)                                                            <---------RAP2.3(2)                     <                                                            <---------RRTF1(3)                     <-                                                            <---------ANAC46                       <-                                                            <<<<<<<<<<AtTINY2                     <--                                                            <---------ANAC58                      ---                                                            <---------ANAC58                      <--                                                           <------NtERF2                      <------                                                           --------->RAP2.6(3)                -------                                                         --------->ALFIN1                     -------                                                         ----------->HVH21                    <------                                                       <---------ANAC46                    ----------                                                       <---------ANAC58                  --------->At4g35610                                    <---------ANAC46   <---------ANAC58                  <---------At4g35610                                    <---------ANAC58   <---------bZIP60(2)       --------->ANAC58<---         --------->ANAC46           <---------ANAC58   <---------TGA1a           --------->ANAC46<---         --------->ANAC58          <------NtERF2       --------->O2     <---------ZAT14*TSS---------- ------->At4g35610               --------->ALFIN1      --------->TGA1a<---------------AtSPL3--------- --------ZAT14                --------->DAG2           <---------O2--------->LBD16--------->LBD16<--- --------At4g35610          ---------->DOF2           <-----------------------TaNAC69(2) --------->ZAT2 -->O2   --------->ANAC58   =====================================bZIP_DOF       <---------LBD16 ----- -->ANAC46              <---------ZAT14       <------ZmHOX2a(2)--------->ARR14(2)--------->ANAC58<---   gagcagagaagacgcaagaagaagagtgaagaaaggtgtcgtagtcggatcactgagacgtggcggctccagagagtacttctccgcaattagctgacga  14597500  <------NtERF2 ------>NtERF2 <---------MYB46(3) --------->LBD16 ---------ANAC46 --------LBD16 -----NtERF2 -------RAP2.3(1) --->NtERF2 -------RRTF1(1) ---ETT(2) ---->HVH21                                                                          <-----------GT1 -->ETT(2)                                                                      ----------->GT1 ---TGA1a                                                               --------->ANAC46 ->TGA1               <---------YAB1                                    --------->ANAC58 ------DEAR3(1)       <---------AHL20(2)            <----------DOF2     --------->ANAC58 ------RAP2.3(2)    <---------RVE1(1)              <----------DOF2      <---------ANAC55(2) ->HVH21            <---------CCA1(1)              --------------->AGL15--------->ANAC55(1) >MYB52(1)  <------ZmHOX2a(1)             <---------YAB1               <---------LBD16 ------RAP2.3(3)   <---------ARR14(2)     <---------AHL20(2)         --------->ARR14(2) ---->ATERF1(1)    <---------ARR11(3)    --------->YAB1              <---------ARR14(2) ------RRTF1(3)    --------->ARR11(3)<---------YAB1<---------------AGL15--------->ANAC55(2)  <-------   cggcgggagagtgaggaagaagatattaatgggcctgttacgatattaatgggcctttagtagtaaacaagaatacggaacgatgttaaacactctattg  14597600                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ====                                                                                                 <---                                                                                   <---------ANAC58    --------->MYB46(3)        --------->AHL20(2)     ---------->DOF2               <---------ANAC58    <---------MYB111(1) --------->GLK1(2)           --------->YAB1            ======================= -----CBF         ------>NtERF2<---------AHL20(2) --------->GLK1(2)*TSS       <----------DOF2 <------   tttccaactactaaaaacgacgcgagtttctattttataactaaaaaacgagaatcaaagtctctgtttcaaatttgggtcttttgcttcttcttgctca  14597700                                                                                                   <-                                                                                                 ----                                                                                                <----                                                                                           --------->TGA1a                                                                                        ----------->HVH21                                                                                        --------->DEAR3(1)                                                                                       <---------At4g35610                                                                                       <------NtERF2<                                                                                       --------->ATERF1(1)                                                                                       --------->At4g35610                                                                                      <---------ATERF1(1)                                                                                     <---------DEAR3(1)                                                                               <---------MYB52(1)<---    <---------ARR14(2)                                                       <---------ANAC46  <-----    --------->ARR14(2)                                                    --------->GLK1(2)==========   <------ZmHOX2a(1)                                                     <---------ARR14(2)<---------O2 <---------TOE2(3)                                                       <---------GLK1(2) <---------bZIP60(2) ----->TGA1a                                                             --------->ARR14(2)<---------TGA1a ----->O2              ---------->DOF2                   --------->HSFB2a(2) <---------ANAC58 <------ ------TGA1a       --------->TOE2(3)       --------->ARR14(2)           <---------HSFB2a(1)<---------ANAC58 =================================bZIP_DOF <---------ARR14(2)           <---------HSFC1(2) <---------ANAC46 ------O2  --------->At5g28300           <---------TOE1(2)              --------->HSFB2a(1)--------->O2 ======bZIP_DOF    --------->TOE1(3)     <---------TOE2(2)              --------->HSFC1(2) <---------ANAC58 ---ZAT18 ----------->GT1         ------->TEIL           <---------HSFB2a(2) <---------ANAC58--------   cttgaggaaacacagtaaaaacctaaaaagagaatgaaactcgcaggtctgaaatcgatcgagaacgctcacgaagattccgtttgggcagcgacgtggg  14597800            <---------ARR11(3)      --------->ANAC58      --------->ANAC58     <------NtERF2    ------>NtERF2           --------->At4g35610    <---------ATERF1(1)     <---------At4g35610                                    ------>ZmHOX2a(2)   <---------DEAR3(1)     <---------ANAC58                                  --------->At4g35610   ----------->HVH21      <---------ANAC46                                  --------->ZAT2   --------->DEAR3(1)     <---------ANAC58                                  <---------ZAT2 ------>NtERF2  --------->ATERF1(1)  <<<<<<<<<MYB2                                  ----------->HVH21   <---------ZAT18 --------->LBD16      <-------GAMYB                 ----------->GT1--------->MYB52(1)   <---------LBD16 ------>NtERF2<---------ETT(2)        <---------GLK1(1)           ------------------>SPL14--------->ZAT18 --------LBD16--------->ETT(2)        --------->GLK1(1)           ------>NtERF2  <---------AGP1 ----->ARR14(2)      <---------DEAR3(1)------>ZmHOX2a(2)          <---------SPL7<---------CCA1(2) -----PCF2  --------->ARR14(2)       --------->ARR14(2)          --------->ETT(2)--------->ARR11(3) ---------ANAC46 --------->DEAR3(2)  --------->ARR11(3)          <---------ETT(2)<---------ARR11(3) ------ARR14(2)  --------->SPL7      <---------ARR11(3)          <---------ANAC58<---------ARR14(2) ----DEAR3(2)<------ZmHOX2a(2)       <---------AGP1<---------DEAR3(1) <---------SPL7    <---------At4g35610 =============================MYC_MYB<---------ARR14(2)          <---------ANAC58--------->ARR14(2) ---TOE1(2) <---------ARR14(2)      <---------CCA1(2)--------->At5g28300--------->SPL7  <---------ZAT18 ->ALFIN1   --------->ARR11(3)----------->HVH21 ----------->HVH21<---------RAP2.6(2)   <---------ANAC46   ttccggcgacggaagatcgaccggcgttgcttctgactggatctcttgacgagacggtgaagttatggcgaccggacgagctggatcttgtgcggactaa  14597900                                   <---------ARR14(2)                                   --------->ARR14(2)                               <------NtERF2                               <---------At4g35610                              <---------ERF1   --------->ICU4                              <---------RAP2.3(1)      <---------At4g35610          <---------MYB52(1)                             <---------RAP2.3(2)<---------ICU4                    <---------ANAC46                             <---------DEAR3(1)<---------YAB1                     <---------ANAC58                             <---------RAP2.3(3)--------->ATHB12                  <---------ANAC58                      --------->At4g35610 --------->HSFB2a(2)         --------->ATHB12         <----------DOF2<----------DOF2   <---------HSFB2a(2)       <---------WOX13(1)   <---------ZAT18    --------->ZAT2   ------>ZmHOX2a(1) <---------ARR11(3) <----------DOF2 <--------   tactggacactctttgggagtagcagctttggctgcgcatccttctgggattattgcagcatcttcttcgattgatagctttgtccgtgtgtttgatgtt  14598000                                        <---------TOE2(3)                                        <---------TOE1(3)                                    ----------->RAV1(2)                                   ------>ZmHOX2a(1)                                ------>ZmHOX2a(1)                               <---------ALFIN1                           <---------At4g35610                           --------->At4g35610                           --------->HSFC1(2)                           <---------HSFB2a(1)                      --------->HSFB2a(2)                      <---------HSFB2a(2)                          <---------TOE1(3)                    --------------------->WRI1      --------->ANAC58           --------->ATHB12--------->HSFB2a(1)      --------->ANAC58     <---------WOX13(1)  --------       --------->TOE1(2)   <---------HSFC1(2) <---------LBD16      <---------TOE2(3)        ------>NtERF2 -TOE2(3) <---------YAB1   <---------ZAT2  --------->ALFIN1   ------->TEIL         --------->YAB1   gatactaatgctacgattgctgttttggaagctcctccttctgaggtttggggaatgcaatttgaacctaaggtaattgactcaatgagattgcctccaa  14598100                                                                                               ------                                                                                    <---------ANAC58                            <---------ANAC46                                        <---------ANAC58              --------->ARR11(3)                              <-----------GT1     --------->ICU4             <------ZmHOX2a(1)                      --------->ATHB12       <---------ANAC58  <-------  <---------TOE2(3)    <---------MYB46(3)         <----------DOF2          <---------ANAC46  --------  <---------TOE1(3)   <--------P                 <---------ANAC58          <---------ANAC58------>ZmHOX2a(1) --------->AGL3      <-------GAMYB               <---------ANAC58     --------->MYB52(2) ----------->RAV1(2)   ttttagggttttgaaggattttgggttgttttgtggtgaaagaattcgattgcttcattgaatttcacttcttagttgcgagtaatgcttctcctgatct  14598200  Previous    Next  AGI:  At4g29820.1    Description:  ATCFIM-25/CFIM-25 (ARABIDOPSIS HOMOLOG OF CFIM-25). similar to protein binding [Arabidopsis thaliana] (TAIR:AT4G25550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65309.1); contains InterPro domain Cleavage and polyadenylation specificity factor, 25 kDa subunit (InterPro:IPR016706) Range:  from: 14595686    to: 14597487    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g29830.1    Description:  VIP3 (VERNALIZATION INDEPENDENCE 3); nucleotide binding. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65306.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 14597667    to: 14599306    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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