Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->HSFC1(2)        --------->HSFB2a(1)        <---------HSFC1(2) --------->TOE1(2) ------>ARR14(2)                         <---------MYB52(1) -------ARR14(2)               --------->ANAC58                                             --------- -TEIL  <---------HSFB2a(1)    --------->ANAC58  <----------DOF2             --------->ARR14(2) ->GT1<---------GLK1(2)  <-----------HVH21---------->DOF2    ------>NtERF2   <---------ARR14(2) -----AtSPL8   --------->ATHB12--------->ANAC46  <---------DAG2   <---------TOE2(3)        <---------   aatccttggaatcttcttcattgaagtcgtcaaacgacattcccttaagcgccttatcgactccgactgagattgagcgaattttgctagagttctcgat  14472000                                                                                        <------NtERF2            ------>ZmHOX2a(2)                                                          ------>NtERF2          --------->ARR14(2)                                                          <---------ANAC46          --------->ARR14(3)                                                      <---------At5g28300          <---------ARR14(3)                                                    <-------TEIL          <---------ARR14(2)                                                   --------->CCA1(2)          <---------ARR11(3)                                            <---------At4g35610          --------->ARR11(3)                                            --------->At4g35610   <---------At4g35610                                                <-----------RAV1(2)  ------->TEIL   --------->At4g35610    ----------->HVH21                          <-------TEIL <---------LBD16 --- >HSFB2a(2)<------ZmHOX2a(2)     ------->GAMYB      <---------------AtSPL8  ----------->ARR10     <-- --------AGL1           --------->ALFIN1 ------->TEIL           <-----------RAV1(2)--------->ANAC46   taggcttctgaagatcgtcttgaacggtgtgacaacgacgatggaccgcgattttaagtaccgagaccaggtacagatgagattcacggcgcgaacctct  14472100                                                                                              -------                                                                                             --------                                                                                     <---------ZAT14               <---------ARR11(3)                                                    --------->ZAT14               --------->ARR11(3)                                                    <---------GLK1(1)  --------->DAG2                                         <---------MYB52(1)          --------->GLK1(1) ---------->DOF2 <---------ANAC58             <---------ARR14(2)                  --------->LBD16 ------>HSFB2a(2)<---------ANAC46             --------->ARR14(2)                ------>ZmHOX2a(2) -------HSFB2a(2)<---------ANAC58--------->REM1(1)  <---------GLK1(2)  <---------GLK1(2)     <-------   cgagaaagcgagttcaatgtcttggaagcgactctacatcgtgctagggattcggaatcgttgattcgactcagaattttgatccagagctctggtggta  14472200                                                                                    --------->ALFIN1<                                                                                  --------->ANAC55(2)                                                                                  <---------ANAC58  <                                                                                  <---------ANAC46 --                 --------->ATHB12                                                 <---------ANAC58---               --------------->AGL15                                              <---------ANAC55(1)               <---------------AGL15                                              <---------ANAC55(2)              <---------ANAC58                                                   <-------TEIL     ---              <---------ANAC58                                          >>>>>>>>>SARD1  =============              <-----------------AGL3                              <---------HSFB2a(2)   <-------GAMYB -->At5g28300 <-----------------AGL1                              --------->HSFB2a(2)  ----------->GT1 --->GT1      <-----------------AGL2  *TSS  <----------ID1  <------ZmHOX2a(1)  <---------SPL7    <--- --MYB46(3)   <-----------------AG ---------->DOF2  <------ZmHOX2a(1)   >>>>>>>>>CBP60g<---------MYB46(3)   actcgtccatggtgtttcttgatttgggaaattgaaggaaaggaagaagacgaaggagagaaggagttatagaaatttggaggtacgtgtggttaaaatc  14472300           <------------CBF         <---------YAB1        --------->AHL20(2)    ----------->GT1   <-------MYC3   ------->MYC2   ------->MYC3   <-------PIF4   <-------PIF5   ------->PIF4   <-------MYC2   ------->PIF5   ------->MYC4   <-------MYC4  --------->O2  <---------O2                                            <-------MYC3  --------->TGA1a                                         ------->MYC3  --------->ANAC55(2)                                    --------->O2  <---------TGA1a                                        <---------O2  ====================================MYC_MYB          --------->MYB52(1)  <---------ANAC55(2)                                --------->MYB46(3) ------------>OsbHLH66                      --------->LBD16 <-----------HVH21 ---------ALFIN1                           <---------HSFB2a(2) ------------OsbHLH66                      --------->HSFB2a(2) ------->LBD16                             <---------HSFC1(1)         <---------ZAT14 ------>ANAC58               ======================================MYC_MYB                   -------- ------>ANAC58               -------->P   <---------LBD16--------->TGA1a            <------------CBF ===========MYC_MYB     <---------ZAT14<---------GLK1(1) <---------TGA1a          <---------YAB1 <--- ------LBD16       <----------ID1   <---------YAB1   <---------MYB52(2) ----------->GT1      <-------   ccgcacgtgttaaaattgtaaacgactaaactacccttatgaattctggaaaataacaaacgtgtcatagagtgaagaaaaacccttattgttttctaga  14472400                                    ----------->GT1                <---------ANAC58                       <------NtERF2--------->LBD16   --------->ARR11(3)                --------->ARR14(2)<---------LBD16     --------->ARR14(2)           --------->ZAT14      <---------WRKY18(1)   <---------ARR14(2)    <---------YAB1      *TSS <---------ZAT14     ----------->HVH21     <------ZmHOX2a(1)    <------ZmHOX2a(1) ->HSFB2a(2) <XXXXXXXXXXXXXXXXXXXXMIR172A/B       <------ZmHOX2a(1)<---------ANAC46 ------GLK1(1)<XXXXXXXXXXXXXXXXXXXXMIR172C/D    --------->ALFIN1   <---------ANAC58           ------- --HSFB2a(2) <XXXXXXXXXXXXXXXXXXXXMIR172E--------->CCA1(2)        <-------TEIL    <---------YAB1    <   tttctccgatttgtgtagtatcgtcgggattttttgaccggagaaatggggaggaggattttgaacgatgcgttgaggacgattgtgaatgctgagagac  14472500                --------->At4g35610                <---------At4g35610                                    ----------->GT1          <---------ANAC46                                            --------->DAG2         <---------DEAR3(1)                                         ---------->DOF2     --------->HSFC1(2)                                          <------ZmHOX2a(1)      <----------DOF2     <---------HSFC1(2)             <---------MYB52(1)      <---------YAB1             <---------DAG2  ---------->DOF2         ------>MYB83                    --------->YAB1            ---------->ID1 -->CCA1(2) --------->ALFIN1   <---------ALFIN1           <---------ICU4           <-----------GT1 ------ZmHOX2a(1)         ------>MYB46(1)               --------->GLK1(2)        <-----------GT1  <--   gaggaaaagcttcggtggagctcaaaccaatctccaccgttatgtcttcgttcttgagaatcatgaaggagaaaggtgaaatttttctcccttttgtttt  14472600                             <---------YAB1                          <-----------------AGL1                          <---------YAB1                         <-----------GT1    <---------At4g35610                 -------->P--------->YAB1   --------->At4g35610                         --------->At4g35610              <---------ANAC58       <---------ARR14(2)           --------------->AGL15 <---------At4g35610 <---------WOX13(1)     --------->YAB1 ------>ZmHOX2a(2)       --------->ZAT6           --------->ZAT2 -------YAB1  <---------ANAC58       --------->ARR14(2) <---------YAB1             <---------HSFB2a(2)   ctaattggttcttgatgcttacccatttatcatttttgggatcggaagctcatcaattctcatggacactagatttagtagtattttagaagctgcaatt  14472700                        <---------ANAC58         <---------MYB46(3)          ----------->RAV1(1)         <-----------RAV1(1)        --------->REM1(1)                             <---------ANAC58 <---------ANAC58       <---------ANAC46                                <---------TOE2(3) <---------ANAC58       <---------ANAC58                        ---------->DOF2   <---------ANAC58   agttcgtgagattgttgggcttacttacttgtgaagctacaacatttgaaagtttgaaacttgaaacaaagtttaatgttttttgcttccaagtttatgt  14472800                                                                                 <-------GAMYB                                                                                ----------->GT1                <---------YAB1                                                  <------MYB83         --------->YAB1                                                         <---------MYB46(3)        <---------YAB1           <----------DOF2                    --------->YAB1  --------->MYB59      --------->YAB1            <---------ANAC58        <-----------GT1      <------ZmHOX2a(1)   <----------DOF2              <---------ANAC58    <---------AHL20(2)     <---------TOE2(3)     <---  <---------ANAC58   --------->ZAT14                --------->AHL20(2)     <---------TOE1(3)  <------  <---------ANAC58   <---------ZAT14             ------->TEIL      <-------TEIL <------MYB46(1)  ----   ttttgcttttatgatgctatcagtggtctgagttgctttgttctacttatgtatatatatacctgttgattcatattaaggatggttagataattcttct  14472900  Previous    Next  AGI:  At4g29420.1    Description:  F-box family protein. Identical to F-box/LRR-repeat protein At4g29420 [Arabidopsis Thaliana] (GB:Q9M0E1;GB:Q8GYI1); similar to Os01g0193500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042281.1); similar to hypothetical protein OsI_000717 [Oryza sativa (indica cultivar-group)] (GB:EAY72870.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 14470465    to: 14472238    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g29430.1    Description:  RPS15AE (ribosomal protein S15A E); structural constituent of ribosome. Identical to 40S ribosomal protein S15a-5 (RPS15AE) [Arabidopsis Thaliana] (GB:Q9M0E0); similar to RPS15AB (ribosomal protein S15A B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G19720.1); similar to unknown [Populus trichocarpa] (GB:ABK94220.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) Range:  from: 14472406    to: 14473627    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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