Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <---------ARR11(3)                                                             ----                  --------->ARR11(3)                                                            <----                 <---------CCA1(2)                                                             ------            <---------At4g35610                                 --------->ZAT6                 <-----            --------->At4g35610                     ---------->DOF2                            ------ -----ARR14(2)   --------->GLK1(1)               --------->AtLEC2    --------->At4g35610      <------ ---->ARR14(2)   <---------GLK1(1)          <----------DOF2    --------->ZAT18                -------   tcttctacagtatgagctgatatctgaagttactaaaacttggctactttcattcaaagcctaagaacactagctcaactaaacaactcaaatcagagat  14465600                                                                                               <-----                                                                                               <-----                                                                                           <-------MYC2                                                                                           ------->MYC3                                                                                           ------->MYC4                                                 --------->ANAC58                          ------->MYC2                                                 --------->ANAC58                          <-------MYC3                                                 <---------ANAC55(2)                       <-------MYC4                                                 --------->ANAC55(2)                       ------->PIF5                                                 --------->ANAC46                          <-------PIF5                                              --------->ARR14(2)                          --------->TGA1a                                              <---------ARR14(2)                          ===========                                              <---------MYB52(1)                          --------->bZIP60(2)                                             <-------GAMYB                                <---------PIF3(3)                                          <---------MYB52(1)                              <---------bZIP60(2)                                         --------->LBD16                                  --------->PIF3(3)                                         ------------>AtMYB77                             <---------TGA1a                                        <---------ATERF1(2)                               <---------O2                                        --------->ATERF1(2)                               ===========                                       <---------LBD16                                    >>>>>>>>>>HY5                                      --------->MYB52(1)                                  <<<<<<<<<<HY5                                     <-----------GT1                                      --------->O2                                 --------->AHL20(1)                                      <<<<<<<<<<AtbZIP1                                 --------->AHL20(2)                                   <-----------HVH21                                 <---------ARR11(3)                                   --------------- -->ZmHOX2a(2)                   --------->ARR11(3)        <-------GAMYB            --------->ANAC58 --ZmHOX2a(2)                    <---------AHL20(2)       <---------MYB46(3)     <---------ZAT2<----- --->AGP1                        <---------AHL20(1) --------->MYB52(1)   <----------DOF2<---------ALFIN1 ----ARR11(3)               ----------->GT1 <---------MYB46(3)           ===========================bZIP_DOF --->ARR11(3)              --------->ANAC58 <---------DEAR3(2)          <---------DAG2<-------------- ---GLK1(1)                --------->ANAC58<---------DEAR3(1)  <-----------RAV1(1)  --------->ANAC58< -->GLK1(1)              --------->MYB52(1)<---------ANAC46=========================================MYC_MYB   cttaactaaatctcaagttaacaaatgaaacggaatatattaccggcggttacgaaacggcgattgtgttgcaaccttttgtgagcacggccacgtggct  14465700                                                               --------->ARR14(2)                                                             <---------MYB52(2)                                                            --------->ANAC46                                                       --------->ANAC58                                                       --------->ANAC58                                                      ------->MYC3                                                      ------->PIF5                                                      <-------MYC2                                                      <-------PIF5                                                      ------->MYC2                                                      <-------MYC3                                                     --------->ANAC58        --------->ANAC55(2)                                                <---------ATERF1(2)      <---------DAG2 ----ANAC58               <---------ANAC58      --------->ANAC46         <---------MYB59 ----ANAC46               <---------ANAC58      --------->ATERF1(2)    ------->TEIL ========================bZIP_DOF              --------->RAP2.6(3) --------------->AtSPL8  --------->ANAC58 ========================bZIP_DOF              <---------LBD16 <---------ARR14(2)  <---------ICU4 -->PIF3(1)           <----------DOF2         --------->MYB52(1)  <---------ANAC46<---------YAB1   -- ----ANAC58       ----------------->AGL1      -------->P    --------->ANAC58 ----------->RAV1(2) <--- --PIF3(2) ------>ZmHOX2a(1)               <---------DAG2   --------->ANAC58-------->P     --------->ANAC58 <<<<<<<<TBF1 <----------DOF2   ----------->HVH21    --------->ANAC58 <---------CCA1(2)  ---------->DOF2   tcttcttcttatcctgctttgccactttcggtgtctgacctctcaccttaccggcacgagccaaggaaccgtgtaccttacctgatgattccaaagcaaa  14465800                     <-----------TGA1                    --------->ANAC46       ----------->GT1           <-------TEIL                  <---------DOF5.7(2)      <------MYB46(1)         --------->ARR14(2)          ---------->DOF2     ---------->DOF2                      <---------ARR14(2)         <------ZmHOX2a(1)        --------->AHL20(2) ----------->RAV1(1)                  --------->ANAC55(2)     ---------->DOF2        --------->YAB1   --------->At4g35610                    <---------ANAC55(2)   --------->DOF5.7(2) -------->DOF2    --------->MYB52(1)       <------MYB83   --------->AHL20(2)         --------->TOE2(3) ------ATHB12   --------->DOF5.7(2)      <---------WOX13(1)    <---------LBD16       --------->TOE1(3)   tcaaagacaataaaaagcattaacgacagcaacaaagaatgagattggtaaattctaaaattgaatacggattcatatggaatcaaacgttaaagaggaa  14465900                                          --------->ABI4(2)                                          ------>NtERF2                                    --------->ARR14(2)                                   --------->ARR14(2)          --------->ANAC58                                   <---------ARR14(2)          --------->ANAC58                                --------->ANAC58               --------->ANAC46                             <---------TGA1a                  --------->SPL7                             <---------ETT(2)               --------->ZAT18                             --------->ETT(2)               --------->ZAT14                   --------->ARR14(2)     <---------ZAT18   <---------SPL7              <---------TOE1(1) --------->ANAC58            <---------ZAT14       <---------WOX13(1) ----------->HVH21                <---------ZAT6     --------->ZAT6     <---------ICU4<---------ARR14(2) <---------DEAR3(1)  <---------------AtSPL3     --------->ATHB12   --------->At4g35610        --------->LBD16          <-----------GT1    <---------YAB1 <---------GLK1(2)<---------ARR14(2)    <---------------AtSPL8    <---------ATHB12    <---------At4g35610      <---------LBD16        <----------DOF2       <------    --------->ICU4<------ZmHOX2a(1)<---------GLK1(2)     <------------------SPL14        *TSS <------   ttacccatgattgtttacgaggattcttctgacgacggaatcggcgctctctccggttatagtgtacggcaacgcttttaactcttctcagagattaggg  14466000                                               <-----------------AGL3                                           --------->ANAC58                                           --------->ANAC58                                           <XXXXXXXXXXXXXXXXXXXXMIR841B*                                          --------->SPL7                                  --------->ZAT14                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                              <---------ARR11(3)                              <---------ARR14(2)       <---------WOX13(1)     --------->ARR14(2)    <---------YAB1            --------->ARR11(3)                                  --------->ATHB12 ---TOE1(3)      --------->ANAC55(2)  <---------ZAT6        --------->TOE2(3)    <---------YAB1 ---TOE2(3)    <---------AHL20(2) <---------ZAT14      <---------MYB46(3) <------------CBF   ttttctatgactgatatttaagtgatgaagacgatctgtactgatacggcccattagtggtttcttaatgggcctatattgttatcatttggaagcctgt  14466100                                <---------GLK1(1)                                                   -                           <-------GAMYB                                                           <-                          <---------ANAC46                                                        ---                          <------MYB46(1)                                                         <<<                          <------MYB83                                                            ---                         --------->MYB59                                                          <--                      <-------GAMYB                                                               ---                     <---------MYB46(3)                                                           ---                     --------->MYB52(2)                                                           <--                     --------->MYB46(2)                                                           <--           <---------GLK1(2)<--------P                                                            ---  ------->GAMYB ------>ZmHOX2a(1)                    --------->MYB52(1) <-----------ARR10         --- --------->ANAC58    --------->MYB111(2)           --------->At5g28300 <---------CCA1(2)          --- --------->ANAC58    --------->MYB111(1)      ----------->HVH21     <------ZmHOX2a(2)<---------YAB1<-   gcaacgaaatttagattcctagttagttgggttgatatcggtccgattgtgacagtaacagatggtttagatcaaatctcactagttatttttgttagcc  14466200   --------->At4g35610   <---------ZAT2   <---------At4g35610 -------->TGA2(2) ----------HVH21          <---------At4g35610 ------>ANAC46            --------->ZAT2 <<<<<<<AtbZIP1           <---------ZAT2 ------>ANAC58            --------->At4g35610 -------bZIP60(1)        --------->ANAC58 ------>ANAC58           --------->ANAC58 ------>bZIP60(2)    --------->ANAC46         <-----------GT1 -------O2           --------->ANAC58     --------->YAB1 -------TGA1a<---------ANAC58     <---------MYB52(1) ------>bZIP60(1)    --------->ANAC58    <---------YAB1 ------>TGA1a<---------ANAC46     --------->DOF5.7(2)         <---------CCA1(2) ------>O2   <---------ANAC58    <-----------HVH21   --------->ZAT14 ----------->TBP ----------TGA1     <---------LBD16 --------->MYB52(2)      --------->YAB1     <---------MYB52(1)   acgtcagcttaatattcgtgtacgcgcaagctcaccgttagctatgataaaccccttcactatcatctcttacaaaaacccattagcttcttcagtcttc  14466300                     <-----------HVH21           --------->AHL20(1)                  ------->GAMYB                 --------->YAB1               --------->MYB52(1)             --------->AHL20(2)               ----------->RAV1(1)        ----------->GT1            --------->ANAC58             >>>>>>>>>TBF1            --------->ANAC46    <---------ANAC55(2)       <---------TOE2(3) *TSS       --------->ANAC58    --------->ANAC55(2)       <---------TOE1(3) <-----------GT1       <--   tctaaaatacttgcaagcaacagagtcagaggttaagtaagaagaagaaaaaataatgctaaggtttcaatgttttcttcaccttcttcagccttctatg  14466400                                                                                              -------                                                           --------->ANAC46                   -------                                                           --------->DREB2C(2)               <-------                                                           --------->At1g77200               <-------                                                           ----------->HVH21                 --------                                                           --------->DEAR3(1)                <-------                                                           <---------ETT(1)                  <-------                                                        <---------WRKY12               <------ZmHOX2a(1)                                                        <---------WRKY38(1)          --------->LBD16                                                      <-----------HVH21             <-----------RAV1(2)                                                   <---------ANAC46                 <---------LBD16                                                   <---------ANAC58                 <---------HSFB2a(2)                                                <---------MYB52(1)                  --------->HSFB2a(2)                                             --------->RAP2.3(1)                  --------->CCA1(2)                                             --------->DEAR4(2)                   <------ZmHOX2a(2)                                             ----------------->AGL1              <---------ARR11(3)               --------->AtMYB61             <------NtERF2 --------->DEAR4(1)    --------->ARR14(2)               <---------ALFIN1              --------->ATERF1(1)          --------->ZAT14    <-------              <---------MYB55(2)            ------>NtERF2 --------->DEAR3(2)     --------->ARR11(3) -             -------->P                     <---------RAP2.3(1) --------->ANAC58 --------->AGP1 <----          --------->At4g35610              <---------DEAR3(1)   --------->ANAC58 <---------ARR14(2) -         ------->GAMYB           <-----------------AGL1----------->HVH21  <---------ZAT14    <-------      ----------->RAV1(1)        --------->ANAC46  <---------ANAC58    ==================HOX2a_HOX2a< -------ANAC46--------->MYB46(3) <-----------GT1<---------ARR14(2)     ------>ZmHOX2a(1)     --------   gcgaagaacaacagcaaccactcgaatatttgtttacacaatttggcgccgtttcgggtcaccgacacgattcctgtacagaagatccaggagttacgtg  14466500  Previous    Next  AGI:  At4g29390.1    Description:  40S ribosomal protein S30 (RPS30B). Identical to 40S ribosomal protein S30 (RPS30C) [Arabidopsis Thaliana] (GB:P49689;GB:O82203;GB:Q9M0E4); similar to 40S ribosomal protein S30 (RPS30A) [Arabidopsis thaliana] (TAIR:AT2G19750.1); similar to 40S ribosomal protein S30 (RPS30C) [Arabidopsis thaliana] (TAIR:AT5G56670.1); similar to Os06g0172600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056941.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65408.1); contains InterPro domain Ribosomal protein S30; (InterPro:IPR006846) Range:  from: 14464993    to: 14465989    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g29400.1    Description:  oxidoreductase/ transition metal ion binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G08400.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO65401.1) Range:  from: 14466301    to: 14468149    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version