Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ZAT6                       --------->ANAC58      ----------->GT1                             --------->ANAC58                                <--     ----------->GT1                            ---------->DOF2                                  <--- -------->YAB1                               --------->HSFB2a(2)         <---------TOE2(3)     <----- -----AHL20(2)                              <---------LBD16     --------->AHL20(2)           <------- ---->AHL20(2)      ----------->GT1   <----------DOF2          <---------ATHB12       <----------DOF2 --->GT1 ---------->DOF2      <-----------GT1<---------HSFB2a(2)--------->YAB1        <---------DAG2   aattagaacgataaaacactagaagtaaattttgaccatgcttttatctggaaagcattgtttcaatgaaattcaaaggtttgtgtagcttttttatctt  14455200                                                                                             <------NtERF2                                                                                         xxxxxxxxxxxx                                                                                      --------->MYB52(1)                                                                                <---------AHL20(2)                                                                         <---------AHL20(2)  <-------         <---------ALFIN1                                          --------->YAB1     ---------->DOF2 -------MYB46(3)       <---------YAB1                           --------->WOX13(1) --------->YAB1 ------TOE1(2)         <---------AHL20(2)              <----------DOF2  --------->AHL20(2)   -------- -----DOF2    <-----------HVH21<---------TOE2(3)      <---------ANAC58  --------->AHL20(1)   -------- --YAB1<<<<<<<<<<<<<<<<<LFY    <---------TOE1(3)      <---------ANAC58  <---------AHL20(2)   <-------   tggttcaatctccactggtcacagttttattgtaaggttttgatatatatagtcttgcttttgtattaatcaaatttaatattaaaaataaaggcagcta  14455300                                                                              --------->LBD16                                                                             --------->ANAC58                                                                             --------->ANAC46                                                                             --------->ANAC58                                                                            <-------MYC3                                                                            ------->MYC2                                                                           --------->ANAC58                                                                           --------->ANAC46                                                                       <------ZmHOX2a(2)                                                                      --------->AGP1                                                                      --------->ARR11(3)                                                                      <---------ARR11(3)                                                                      --------->ARR14(2)                                                                      <---------ARR14(2)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                    --------->MYB59                                                                    ----------->ARR10         xxxxxxx                                                                --------->ANAC58           <-------MYC2                                                                --------->ANAC58           ------->PIF5                                         --------->CCA1(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)  ------->MYC2                                        --------->ARR14(2)   <------NtERF2 --------->ANAC58------->MYC3      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  --------->LBD16<-------MYC2   <-------PIF5      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ---------->DOF2--------->ANAC46------->MYC3   <-------MYC3    <---------At4g35610                 --------->ARR11(3)  --------->ANAC58<-------PIF5  <---------ANAC58 xxxxxxxxxxx>smallRNA(le3)              <---------ARR14(2)  --------->ANAC58------->PIF5  <---------ANAC46 --At4g35610                            <---------ARR11(3) --------->SPL7<---------ALFIN1 <---------ANAC58 ->ZAT2                               ----------->ARR10  <---------SPL7--------->CCA1(2)<---------ANAC58 ->At4g35610                     ---------->DOF2        <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------ANAC46 --ZAT2                      ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------ANAC58   gaattgagctattagtaaacctcttgtgatcaaaagaaagaagatttgaaagagaaaaccgtccgcaagttagatccacgcgcgactctagcgcgtggaa  14455400                             --------->ARR11(3)                             <---------ARR11(3)                            <---------CCA1(2)                    <------------CBF               <---------CCA1(2)             <---------ANAC58--------->ARR14(2)             <---------ANAC58<---------ARR14(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->ARR11(3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <---------ARR11(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                --------->RVE1(1)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <---------RVE1(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->CCA1(1)       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <XXXXXXXXXXXXXXXXXXXXXMIR447A/B     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->YAB1   ------------>CBF     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------TOE2(3)   <----------DOF2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2)  --------->GLK1(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(2)   <---------GLK1(1)                   <--    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(1)   <---------CCA1(1)              <-------    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(1)  <---------ARR11(3)         --------->AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->AHL20(2)  --------->ARR11(3)         <---------AHL20(2)   tatagctattagtttgcctatctattgtacatatcttgagaaataaaatttagattatagtaagatatctcttttccaatggaaacttgataaattttcc  14455500                                                                 <-----------GT1                                                              --------------->AtSPL8                                                           <---------AHL20(2)                                                          <---------ARR11(3)                                                          --------->AHL20(1)                                                          <---------AHL20(1)          ---------->ID1                                                         ----------->TBP        <---------YAB1                                <----------DOF2    --------->GLK1(1)         --------->ICU4         - --------DOF2<-----------GT1<----------DOF2        <---------GLK1(1)         <---------YAB1    ------ ----GT1 <----------DOF2 --------->ARR11(3)      <------ZmHOX2a(1)------->TEIL <---------ARR11(3)  --   ctttgatttttcttttgactacattactatctttctttacatcagggagaaggatttctatatatttgaaccccatttcatgatttttgtctccatcacc  14455600                                          --------->MYB52(1)                                  <------NtERF2                                 <---------At4g35610                                 <------NtERF2                                 --------->LBD16--------->HSFC1(2)                                 --------->At4g35610                                ----------->RAV1(1)                                                 <                               --------->RAP2.3(1)                                                  -                               --------->ATERF1(1)                                                  <                              --------->DREB2C(1)                                                   -                              <---------ATERF1(1)         --------->DOF5.7(2)                       -                              ------>NtERF2     <---------HSFC1(2)                                  <           <---------------AGL15--------->RAP2.6(2)     <---------MYB46(3)  <---------MYB52(1)      -         ------>ZmHOX2a(2)    <---------DREB2C(1)     --------->LBD16      <-------GAMYB           --       --------->ARR11(3)    <---------SPL7     --------->ZAT2         --------->TGA1a             <-       <---------ARR11(3)    --------->DEAR3(1) <---------At4g35610    ============MYC_MYB        ---   --------->YAB1            <---------ATERF1(1)--------->HSFB2a(1)    <---------TGA1a        ------>NtERF2 --------->DOF2            --------->At4g35610  --------->At4g35610    <---------O2          -------- --->MYB46(3)---------->DOF2<---------RAP2.6(2) <---------HSFB2a(1)    --------->O2         <-------- ------->AtMYB61           <---------At4g35610 ------->TEIL      <-----------HVH21          ---------   accaaagatgatccccaaagaagaagttgagcggccgcagaaaaaaacgaagcttccgtcgttaccatgtgagacgtcgttgttcttgcaacttcccgac  14455700          <---------At4g35610        <---------ZAT14        --------->ZAT14    ------>ZmHOX2a(1)  ------>ZmHOX2a(2) --------->GLK1(2) <------ZmHOX2a(2) ---------ARR11(3) -------->ARR14(3)   <---------TGA1a ---------ARR14(2)   --------->TGA1a -------->ARR11(3)   --------->ANAC58 -------->ARR14(2)   <---------O2                       --------->O2 ---------ARR14(3)   <---------ANAC55(2)     <---------ZAT14 -------->AGP1       --------->ANAC55(2)     --------->ZAT14 ------->GLK1(1)     --------->ANAC58        <---------ZAT18                        <---------ALFIN1 --------GLK1(1)     --------->O2           --------->DOF5.7(2)                  --------->ANAC46 -------->ARR10      --------->bZIP60(2)    <---------MYB52(1)          <---------ANAC58 ->LBD16--------->ZAT18                 <---------At5g28300         <---------DAG2------>ZmHOX2a(1) -HSFB2a(2)   <---------ANAC58         <-----------GT1  --------->TGA1a <---------ANAC58    -------->P >HSFB2a(2)   <---------ANAC58        <---------SPL7    =============================================MYC_MYB   gagatcctggtgaactgcttggcacgtctctctaaatcgtcttaccgttcactctccctcgtctgcaaaacctttcgttctctcctccactctcaacccc  14455800                                       ------>NtERF2                                    --------->At4g35610                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                 --------->CCA1(2)                                <---------ARR14(2)                                --------->ARR14(2)                                --------->ARR11(3)                                <---------ARR14(3)                                --------->ARR14(3)                                <---------ARR11(3)                                --------->AGP1                             <---------ARR14(2)                               <---------GLK1(1)                           --------->ARR14(2)                               --------->GLK1(1)                        --------->ANAC58                              ----------->ARR10                         --------->ANAC58                            --------->LBD16                             --------->ANAC55(2)       --------->LBD16     --------->ANAC46                             <---------ANAC55(2)      --------->ANAC46    <---------LBD16                        <---------At5g28300     <---------LBD16    --------->MYB46(3)           <---------ETT(2)   --------->ANAC46     ------>NtERF2    <---------ARR14(2)    <---------CCA1(2)   <-----------GT1     --------->LBD16  --------->ARR14(2)  <----------DOF2    --------->MYB52(2)          <---------TOE2(2)   <---------LBD16 --------->ANAC58 <---------At4g35610      <---------MYB46(3)       --------->ANAC58   ---------->CDC5 --------->ANAC46 --------->ZAT2   --------->ETT(2)  <---------LBD16--------->ANAC46 --------->ANAC46  --------->ANAC58<-----------RAV1(1)     <---------MYB52(1)         --------->ANAC58   tctactccgcgcgatatcaactcggaaccacggagatctgctgcctttatctctgtctacggtttgttaccgctacggaaccagtctcacgctggtttac  14455900                                                                    --------->ICU4                                                                  --------->MYB52(1)                                                               --------->YAB1           ----------->GT1                                                               --------->TOE1(3)    --------->AHL20(1)                                      --------->KAN4(2)        --------->TOE2(3)    --------->ARR11(3)            --------->ALFIN1         <---------ICU4            --------->ANAC46    --------->AHL20(2)      <------ZmHOX2a(1)             <---------YAB1             ------->GAMYB ----------->GT1   tctcagtaggagaagtggaagtgttttggttccttctgatcattctctcccatattcaaattcaaccgtaacgatgggttcgaaaatatatggtgaacat  14456000                                                                                                    <                                                                                                   --                                                         --------->ALFIN1                          <-                                  <---------GLK1(1)     <-------PIF5                              ---                               ----------->GT1          ------->PIF5                           ------                          <----------DOF2              <---------TGA1a                         ------        <----------DOF2   =======================================bZIP_DOF               ----------->GT1  ----------->TGA1      --------->At4g35610            --------->TGA1a  ----------->RAV1(1)    ------  ----------->HVH21     <---------At4g35610    <-----------GT1<---------DEAR3(1)  XXXXXXXXXXXXXXXXXXX   atgggtgacgcttttggtccgtcttcagctatatggatatatgactgttttactcgctcgtggggcgatgtccccaacatgaagatgaagagggaaaacg  14456100  Previous    Next  AGI:  At4g29370.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g29370 [Arabidopsis Thaliana] (GB:Q9M0E6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 14455608    to: 14456744    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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