Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->DAG2                                                   --------->TOE2(2)                                                   --------->TOE1(2)                                                  --------->ANAC55(2)                                                  <---------ANAC55(2)                                                 <---------TOE1(3)                                                 <---------TOE2(3)                               ----                                            --------->ARR11(3)                        ---------->DOF2            <-----------RAV1(1)      ----------->GT1    --------->YAB1           ---------->DOF2<----           <---------TOE2(3)--------->At4g35610 --------->MYB52(1)              <---------AHL20(2)   <---------ICU4        --------->At4g35610--------->GLK1(2)             ----------->GT1       <----  <---------ATHB12       <---------At4g35610<---------ARR11(3)  --------->ZAT18 --------->AHL20(2)   tccaatcgttgctaatgttgttttgtaagcagaagaattttgtaaaaatctaacgtaagaataaggtgcccagtaaatgtaattaaagcaaagacttggc  14420300                   <---------ARR11(3)                   --------->ARR11(3)                                 --------->ZAT18                   --------->AHL20(1)                                 --------->ZAT14                  --------->RVE1(1)                                   <---------ZAT14                  --------->CCA1(1)                    --------->ANAC58          <---------LBD16                              --------->ANAC58               <----------DOF2        <-----------GT1                                --------->ANAC46  <-----------------AGL1 ----------------->WRI1                       --------->ATHB12    <---------------AtSPL8           -- -----ANAC58--------->LBD16            --------->At4g35610     ------->TEIL  <----------DOF2     ---- -----ANAC58----------->GT1       --------->WOX13(1)  --------->WOX13(1) --------->ANAC46 ---------->DOF2   ttagtgaatttcaccggaaaatatcttgttttgaatcaattagatgaatgagtgatcaagcaatgtatgtagtacaccgcatttgggactttgaaagaac  14420400                                                                                        --------->ZAT14        --------->At5g28300                                                             <---------ZAT14      --------->ANAC58                                                          --------->AHL20(2)      --------->ANAC46                                                          <---------AHL20(2)      --------->ANAC58                       <---------ARR14(2)               --------->AHL20(2)     <---------LBD16      --------->ANAC58   --------->ARR14(2)               <---------AHL20(2)    <---------ALFIN1      --------->ANAC58 <---------MYB46(3)               --------->AHL20(2)   --------->MYB46(3)--------->ANAC46    <---------MYB52(1)                 <---------AHL20(2)   --------->DEAR3(1)--------->ANAC58 <---------LBD16                     --------->AHL20(2) ------->MYB46(3)    --------->ANAC58--------->MYB52(1)            ----------->GT1  <-----------GT1 ----->WOX13(1)  --------->AtLEC2--------->YAB1           ----------->GT1 <---------AHL20(2)       <-   aatcacccacggcaaaaccttgcaagtcactccattgatcaccggtggatatagtatagatggctaaattagttatatatatatatatactatactacca  14420500                                                           <---------YAB1                                                         --------->YAB1                                                        <---------YAB1                <---------MYB46(3)                               --------->MYB52(1)  <---------PCF5                    <--------P                            --------->AtMYB61   <---------ANAC55(2)        --------->STY1(1)                            --------->YAB1      --------->ANAC46           <---------STY1(1)  <---------YAB1<---------AtLEC2                --------->ANAC55(2)       <---------MYB52(1) <---------TOE2(3)      <---------ETT(1)       <---------LBD16         ----------------->AGL1 --------AHL20(2)    ------->TEIL             <-----------GT1    <-----------GT1    <-------GAMYB   atttatgtttaggggttttcatgaacccgaccataacagaaacatgttttacgggaccatgataattctacattcccttaggggagggttgtttagttca  14420600                                           ------->TEIL                                      --------->MYB52(1)                                     ------->GAMYB                                    --------->MYB46(3)                                    <---------MYB55(2)                                    <---------MYB52(2)                                   ------>MYB46(1)                                  ----------->RAV1(1)                                 --------->AtMYB61                              --------->ANAC46         <---------AHL20(2)                              --------->ANAC58       ----------->TBP                  --------->ARR14(2)                              --------->ANAC58<---------CCA1(2)                 --------->DAG2 ------                      --------->AHL20(2)--------->ANAC58             --------->ZAT2   <---------ARR14(2)   --------->DAG2   <---------ANAC55(2) --------->ANAC58             --------->At4g35610     --------  ---------->DOF2   ----------->GT1------>MYB83      --------->AHL20(2)        ---------->DOF2 *TSS--   tgggaaaagtatgtgttgaaatatgtaaatacacaccaacaaacgcacatatcatatatatatggtatacaagctcacatcaaaagtggattctaaccaa  14420700                                                <------ZmHOX2a(1)                                                <---------PCF5                                      <---------ICU4                                      <------------ATHB5         ----------->GT1              <--------ATHB1                                  --------->ZAT6  --------->YAB1                      --------->YAB1         <-------TEIL            <---------ZAT14 ---->DOF2------->GAMYB              --------->ICU4  <---------ANAC46                <---------ZAT18 ->MYB46(3)                          <---------ATHB51--------->O2              --------->ALFIN1------ ------->YAB1           ---------->DOF2      <------ZmHOX2a(1)        ---------->DOF2--------->ZAT18   agaataatacaacgaaaaatgtttgctaaagagaagacaataatggaggaggaccgcgtgagattcatatgcaaaagaaccgtggtgagcactagatcga  14420800                                                  --------->ANAC46                                                --------->AtMYB61                                                <---------MYB59                                       --------->TGA2(2)                                      <-----------TGA1                                     --------->bZIP60(2)                                     <---------O2 ------>MYB83                                     --------->bZIP60(1)                                     <---------bZIP60(1)                                     --------->O2 ------>MYB46(1)                                     --------->ANAC58                                     --------->TGA1a                                     --------->ANAC55(2)                                     <---------ANAC55(2)                                     --------->ANAC46                           --------->ALFIN1                                     --------->ANAC58                          <---------MYB52(1)   -                                    <-----------STF1                        <---------LBD16        <-                        --------->ZAT6<-----------HVH21            --------->ZAT18                <--                       <---------YAB1--------->ANAC55(1)           <---------ZAT18               ---- --->ATHB12   <-----------GT1      <---------ALFIN1       <-------TEIL     --------->MYB52(1)   <----   ttgaaccagggcgattataccagttatcagtattggaccacgtcatggaaccaaaccacattcgtctagtctactattaccggtgttccaagactagaga  14420900                               --------->ICU4                             --------->ATHB12 --------->LBD16      <---------TOE2(3) -------->LBD16      --------->MYB52(1)                                        ---------->DOF2 --------LBD16  <---------AHL20(2)               --------->YAB1            ----------->GT1 -------LBD16   --------->AHL20(2)         --------->ANAC58        --------->LBD16 ----->GLK1(2)  --------->AHL20(1)         --------->ANAC58       <---------LBD16 -----ARR14(2) --------->AHL20(2)          --------->ANAC46      <---------LBD16   accgggagaaatcacaaaaaaattaagggagtcattagcatacacactcaattgttatccgattgtaaccgggagactggttaaagaagttgatggtatg  14421000                                                    --------->ALFIN1                                                  <---------O2                                                  --------->TGA1a                                                  <---------ANAC46                                                  ==================================MYC_MYB                                                  ===================================MYC_MYB                                                  ===================================MYC_MYB                                                  --------->O2                                                  <---------ANAC58                                                  <---------TGA1a                                                  <---------ANAC58                                                 <------NtERF2                                                ------>NtERF2                                                <---------ATERF1(1)                                                --------->LBD16                                               <---------DEAR3(1)                                               <---------ATERF1(2)                                               --------->DEAR3(1)                                              <------NtERF2<------MYB83                                              --------->ATERF1(1)                                              <---------LBD16                                              --------->RAP2.3(1)                                             <---------ATERF1(1)                                             <---------RAP2.3(1)                                             ------>NtERF2--------->ALFIN1                                          ------->GAMYB <------ZmHOX2a(1)                       <----                             ----------->GT1--------->ANAC46 --------->ALFIN1           --------->ANAC55(2)                             <------MYB83 ==================MYC_MYB                     <---------TOE2(3)                   --------->MYB52(1)    --------->MYB46(3)<---------MYB46(3)           <---------TOE1(3)               --------->ANAC46          --------->DEAR3(1)<------MYB46(1)      <-----------HVH21               --------->ANAC58 ============================bZIP_DOF          --------->LBD16   <----               --------->ANAC58 ---------->DOF2--------->ATERF1(2)           ------->GAMYB<------ZmHOX2a(1)         <------ZmHOX2a(1)   <------MYB46(1)--------->DEAR3(1)             --------->MYB52(1)   <----       <---------TOE2(3) <---------MYB46(3) <---------DEAR3(1) --------->ATERF1(1)  <-------GAMYB      --------->YAB1 <---------ATHB12    ----------->HVH21<---------AtMYB61-------->P<---------MYB52(1)   gaagagaataaggatttaagccaacgatggatggtaaagagcaacgacgccggcgtgaggatggtggaggccagagcaaccgggtcagttaaggaatggc  14421100                                                                 --------->ATHB12                                                                 --------->ATHB51    <---------ZAT6                                              <---------AHL20(2)    ----------->GT1                                             <---------YAB1 <------ZmHOX2a(1)                                             --------->YAB1 -----ANAC58         <---------ARR11(3)                        --------->AHL20(2)                   < -----ANAC46         --------->ARR11(3)              --------->YAB1     --------->ETT(2)   <---------KAN4(2) -----ANAC58     <------ZmHOX2a(1) --------->ATHB12------->TEIL<---------AHL20(1)      <---------TOE1(3)   ttaggagtgtaaatagagaggaagaactcaagcttgttcattgggaagacatgtatcatcttcaatattattggtctaccttctgtgttcaggtatattc  14421200  Previous    Next  AGI:  At4g29240.1    Description:  leucine-rich repeat family protein / extensin family protein. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G19780.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62837.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 14418611    to: 14420256    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g29250.1    Description:  transferase family protein. similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G23840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44161.1); contains InterPro domain Transferase (InterPro:IPR003480) Range:  from: 14420695    to: 14422287    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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