Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------AHL20(2)      <---------AHL20(2)                                                                        -----      --------->AHL20(1)                                                            --------->ARR11(3)      --------->AHL20(2)                                                            <---------ARR11(3)      <---------AHL20(1)                                         --------->AHL20(2)--------->CCA1(1)  <---------AHL20(2)                   <---------ZAT18   --------->At5g28300       --------->RVE1(1) --------->AHL20(2)              ------->TEIL           ----------->GT1 <---------ALFIN1       ------ ----->AHL20(1)                <-------TEIL       ----------->HVH21   <-----------GT1          ------   atattaaataaaattgttcaatggagacacaaatgcatttgtgcaattccatgtgatgcagtaaaaaaaaaatcacactcccaaaatatctctctctaca  14418200                                                                                             <-------                                                                                             --------         ----------->RAV1(1)                                                                 --------        --------->MYB46(3)                                                                  <--------    >>>>>>>>>>WRKY63                                                                      --------->YAB1  --------->ANAC58            --------->ANAC58                                 <---------AHL20(2)  --------->ANAC46            --------->ANAC58                                <---------AHL20(2)  --------->ANAC58            --------->ANAC46                     --------->GLK1(2)     --------->AHL20(2) ------>RAV1(1)         <-----------HVH21                         <---------GLK1(2)<-----------GT1 --->REM1(1)         <---------At5g28300 <----------DOF2   --------->REM1(1)  <---------AHL20(1) --->ANAC46      --------->YAB1         <---------DAG2    <-------TEIL        --------->AHL20(2)   acacaagtcaacaacacaatattcacagtcacaagctatatgccttttcttatttatagcttcatctagattctgttcaattttttttccatttattatt  14418300                                                                          <---------YAB1                                  --------->WOX13(1)                    <---------ICU4                                 --------->AHL20(2)                     --------->ATHB12                                <---------ATHB12       --------->ALFIN1 --------->ATHB51                               --------->ANAC58      <------MYB83    --------------->AGL15     --------->ATHB12          --------->ANAC58      <------MYB46(1) <---------------AGL15 --ICU4                   <-------TEIL  --------->ARR11(3)          ----------------->AGL3 ->ATHB51                --------->CCA1(2)          --------->MYB46(2)  <--------HAHB4       -------- ->ATHB12               <---------GLK1(2)           --------->MYB111(1)<---------YAB1        -------- -YAB1              ---------->DOF2  --------->YAB1 --------->MYB111(2)--------->ICU4      --------->MYB52(1)   gcattcttgattacttctgtctaaaagattcacaatcaattagaacttgtttagtaggtggaacttaaaaaccattattagttaacttatcaagaacgga  14418400                                                                          <-------TEIL                                                                 --------->ZAT6                                                               <-----------GT1                                                           --------->AHL20(1)              ----------        <---------ZAT18                                    <---------ARR11(3)              --------->ALFIN1 ->ANAC58                   ----------->GT1                <---------AHL20(1)          ---------->DOF2 ->ANAC58      --------->AtLEC2<-----------GT1             --------->AHL20(2)  --------->AHL20(2) ---   atcaaactagtgcatccattcaaatgacaaatgtaacaatttgtcaaaacatgtgattcaatattttacactaaaatgcattgaaataacaaagtggaac  14418500                                  ------------>CBF                                 --------->AtLEC2                                 --------->ANAC58                                 --------->ANAC58                                 --------->ANAC46                              <-------TEIL                     ----------->HVH21                    <-----------HVH21  --------->YAB1                --------->ZAT6      --------->TGA2(1)          ----------->GT1 <---------YAB1                            ------------>CBF     <---------TGA2(1)     ---------->DOF2--------->LBD16 --------->WOX13(1)             <-----------GT1       <---------bZIP60(1) <----------ID1    <---------ANAC55(2)<---------ATHB12          --------->TOE2(3)        --------->bZIP60(1) -------------->ANAC81  --------->CCA1(2)                 --------->At5g28300         ----------->HVH21 ------->DOF2      --------->ANAC55(2)--------->ICU4     ----------->GT1   ---------->DOF2<---------MYB59   aaaaggaaaaagaagaaaaacccgtgatatgattcatgcaatcataagttgaacataaacagtaaaacttaacaatacaaaggcaaatgtgacataacta  14418600                              <---------ICU4              --------->ARR11(3)                    <---------ICU4              <---------ARR11(3)   <---------ZAT18 <---------YAB1           --------->YAB1   --------->GLK1(2)     --------->TOE2(3)      <---------ALFIN1           *TSS             --------->ARR11(3)<---------CCA1(2)    --------->AtMYB61           <----- --------->ANAC58       --------->YAB1      --------->YAB1         <---------ALFIN1     <---------GLK1(2) --------->ANAC46      <---------YAB1 <---------ALFIN1             ------->GAMYB        <---------ICU4 --------->ANAC58  <----------DOF2---------->ID1 --------->YAB1   --------->MYB46(3) --------->YAB1   cacaaggaacaaataagaactctttttgataatcttgtcccctctctcatatcatcaatgcttcttcaaccacatccactctgtttttcataatctcaca  14418700                                                                                       ------>ZmHOX2a(1)                                         --------->ANAC46                             ---------------                                       --------->ANAC58                               --------->TOE2(3)                                       --------->ANAC58                               --------->TOE1(3)                                       --------->ANAC46               <---------YAB1 ================                               --------->ANAC58                     --------->YAB1<----------DOF2                               --------->ANAC58                    <---------ATHB12  ---------------- ----ALFIN1                    <---------ALFIN1                  --------->WOX13(1)  ----------------   ctctctctctctctctctctctctctcacacacacacactcacacaaaactcattaatccactgaaacaatcactattcattctctttccttaagtgtca  14418800                                                                                                <----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                             <-------                                                                                           <---------MYB46(3)                                                                                           <------MYB83                                                                                           --------->MYB55(2)                                                                                           <------MYB46(1)                                                                                          <---------AtMYB61                                                              <---------TOE1(3)         <---------ANAC58                                                    ----------->RAV1(1)                 <---------ANAC58                                                  --------->At4g35610                   <---------ANAC46                                                  <------NtERF2 <---------GLK1(2)      <---------MYB46(3) >AGL15                                           <---------At4g35610           ------>ZmHOX2a(1) ================================================================================================MADS_MADS ->AG                ----------->GT1       ---------->DOF2<----------DOF2      <-----------------AGL3 ->AGL1        <----------DOF2          >>>>>>>>>TBF1 --------->MYB46(3)       <-----------------AGL2   aactcttgaaaaaactactttgaaggaaaaaatgtctaagaagaagaaaggcagcaacaactttaagcttctctgtttcttcctgtttttgggtggtttg  14418900                                                                   <------NtERF2                                                                   --------->ATERF1(1)                                                                   <---------ABI4(1)                                                                  <---------MYB46(3)                                                                  <---------RAP2.3(1)                                                                 <---------ANAC46                                                                 <---------DREB2C(2)                                                                 <---------RAP2.6(2)                                                                 <---------DEAR3(1)                                                                <------NtERF2                                                              <---------AtMYB61                                                              --------->ALFIN1                                                              ----------->HVH21                                                              <---------DEAR3(1)                                                             <------NtERF2                                                             --------->ATERF1(1)                                                             <---------ABI4(1)                                                             <-------GAMYB                                                            <---------DEAR4(2)                                                            <---------ATERF1(1)                                                            <---------DEAR3(2)                                                           --------->ALFIN1                                                           <---------ANAC46                                                           <---------DREB2C(2)                                                           <---------DEAR3(1)                                                           <---------AtMYB61                                                          <------NtERF2                                                          <---------ABI4(1)                                                          --------->ATERF1(1)                                                         <---------DEAR4(2)                                                         <---------ERF1                                                         <---------RRTF1(1)                                                         <---------RAP2.6(1)                                                         <---------RAP2.3(1)                                                         <---------ORA47(2)                                                         ------>NtERF2                                                         <---------ATERF1(1)                                                        <---------RRTF1(2)                                                        <---------RAP2.6(2)                                                        <---------RAP2.3(3)                                                        --------->DEAR3(1)                                                        <---------DEAR3(1)                                                        <---------ATERF1(2)                                                        <---------RAP2.3(2)                                                        --------->ATERF1(2)                                                        <---------RRTF1(3)                                                        <---------ANAC46                                                        --------->ALFIN1                                                       --------->DEAR4(2)                                                       --------->ATERF1(1)                                                       <---------ABI4(1)                                                       --------->DREB2C(1)                                                       --------->At4g35610                                                       --------->RAP2.3(1)                                                       <---------At4g35610                                                       <------NtERF2                                                      <---------ORA47(2)                                                      <---------RAP2.6(1)                                                      <---------RRTF1(1)                                                      <---------DEAR4(2)                                                      <---------ATERF1(1)                                                      <---------RAP2.3(1)                                                      ------>NtERF2<-------GAMYB                                                      <---------ERF1                                                     <---------ATERF1(2)                                                     --------->ALFIN1                                                     <---------RAP2.3(2)                                                     <---------DEAR3(1)                                                     <---------RRTF1(3)                                                     <---------ANAC46                                                     <---------RAP2.3(3)                                                     <---------RAP2.6(2)                                                     --------->ATERF1(2)                                                     --------->DEAR3(1)                                                     <---------RRTF1(2)                                                    <---------ABI4(1)                                                    <------NtERF2<---------DEAR4(1)                                                    --------->ATERF1(1)   --------->ALFIN1                                                    --------->RAP2.3(1)   <---------DEAR3(1)                                                    --------->DREB2C(1)   <---------AtMYB61                                                    --------->At4g35610  <------NtERF2                                                    --------->DEAR4(2)   <---------ABI4(1)                                                    <---------At4g35610  <-------GAMYB                                                   <---------RAP2.3(1)  <---------MYB46(3)                                 <-------GAMYB     ------>NtERF2--------->ATERF1(1)            <-----                                <---------DEAR3(1) <---------ERF1<---------ANAC58           ---------                                <---------ANAC46   <---------DEAR4(2)  <---------ANAC58     <--------                               <------NtERF2       <---------RRTF1(1)  <---------ANAC58    --------->At5g28300                               --------->ATERF1(1) <---------ATERF1(1) <---------ANAC46    <------NtERF2                              <---------ERF1       <---------RAP2.6(1) <---------DEAR3(1)<---------DEAR3(1)                              ------>NtERF2        <---------ORA47(2)  <---------RAP2.6(2) <-------GAMYB                              <---------DEAR4(2)  <---------RAP2.3(2)  <---------DREB2C(2)<---------MYB46(3)                              <---------RAP2.3(1) <---------RRTF1(3)   <---------DEAR4(1)<---------RAP2.6(2)                              <---------ORA47(2)  <---------ATERF1(2) <---------ABI4(1)  <---------DREB2C(2)                             <---------RAP2.3(2)  <---------DEAR3(1)--------->ALFIN1    <------NtERF2                             <---------RAP2.6(2)  <---------RRTF1(2)<---------AtMYB61  <------MYB46(1)                             <---------RAP2.3(3)  <---------RAP2.6(2) <------NtERF2    <------MYB83                            --------->ATERF1(1)   --------->ATERF1(2) --------->ATERF1(1)<---------ANAC46       <---------GLK1(2)    <---------ABI4(1)     --------->DEAR3(1)----------->HVH21 <---------DEAR3(1)      --------->At4g35610   <------NtERF2         <---------RAP2.3(3)------>NtERF2    <---------MYB46(3)      <---------At4g35610  <---------RAP2.3(1)   <---------LBD16<---------ABI4(1)     <---------AtMYB61 --MYB83 <---------HSFC1(2)<---------DEAR4(2)    --------->ATERF1(1)<---------DEAR3(1)--------->ALFIN1 --MYB46(1)               <---------DEAR3(1) --------->ARR14(2)------>NtERF2 <---------ANAC46<------- --->MYB59               <------ZmHOX2a(1) <------ZmHOX2a(1)<---------MYB46(3)<---------MYB46(3)----- ----AtMYB61  <----------DOF2<---------DEAR3(1)  <---------ABI4(1)<---------ATERF1(1)<--------P------ --ANAC46--------->HSFC1(2)<---------ATERF1(1) <---------DEAR3(1)<---------ANAC58   <-------GAMYB   gttcagacagatgcttcttttggagtaggaggcggcgttggagtaggaatcggcggcggcggcggtggcggtggcggtggtgtttgggttggcggtggat  14419000                                      --------->At4g35610                                      --------->ZAT2                                      <---------At4g35610                                 --------->YAB1     ------->GAMYB              <------ZmHOX2a(2)  --------->MYB52(1)           <---------ARR11(3) --------->MYB46(3)            --------->ARR14(2)                                                  -- ----ARR14(2)                  --------->ARR11(3)                                                 <-- >ALFIN1                   <---------HSFB2a(2)        <---------ANAC58                            --- -ANAC46                   --------->HSFB2a(2)        <---------ANAC58                           <--- --MYB46(3)<---------GLK1(1)  <------ZmHOX2a(1)      <---------At4g35610                        <---- ---->CCA1(2)              <---------LBD16           --------->At4g35610      --------->GLK1(1) ----- --->ARR14(2) --------->YAB1--------->LBD16        <--------P                 <---------GLK1(1)<-----   acaacaacggtggaaatcgtaatgctgttccaggatcatcagctccaaacagggtagcttacaatgctcttcaagtttggaaatcagccatgagagagga  14419100  Previous    Next  AGI:  At4g29240.1    Description:  leucine-rich repeat family protein / extensin family protein. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G19780.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62837.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 14418611    to: 14420256    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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