Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                 <---                                                                                         <-----------GT1         <---------At4g35610                                                      --------->ARR11(3)         --------->At4g35610                                                      --------->GLK1(2)   ---------->DOF2                                       ---------->DOF2          <---------ARR11(3) --------->LBD16                                  --------->MYB52(1)             --------->CCA1(1) -At4g35610             ------->TEIL           --------->YAB1                    --------->RVE1(1) >At4g35610          <---------REM1(1)       ----------->RAV1(1)          ----------->GT1--------->ZAT6   taccgcaaagcagctagtacaagatgaagcttagttctaatactctccagcataacagttaaagaaacaatagcttaagtaaaaaatcttttcactatcc  14385200                                                                                                    <                            ------->GAMYB                                            <-----------RAV1(1)                  <---------TOE1(3)                    --------->YAB1             --------->GLK1(2)<-  <---------TOE2(3)      ----------->RAV1(1)          <---------ATHB12           <---------GLK1(2) -- -->ZmHOX2a(1)    <---------TOE2(3)                 --------->WOX13(1)    <-------GAMYB            <- -------DOF2    ---------->DOF2               ----------->HVH21          ----------->GT1       ------   ttttaagttttctggttttaaaggttgcaacagtctgtaattctctatgtgacccaatcatctaatgtcaaaactcggttacaaattctgtggtcagaaa  14385300                                                              --------->ATHB12                                                             <---------AHL20(2)                     -                        <------NtERF2                        --------->AHL20(2)                    >>                <---------ARR14(2)                           <---------AHL20(1)                  <---                --------->ARR14(2)                           --------->AHL20(1)                 -----               <---------CCA1(2)    <---------ANAC58      --------->AHL20(1)               <-------GAMYB           --------------------->WRI1                     <---------AHL20(1)              --------->MYB55(2)        <---------AHL20(2)          <---------ANAC58      --------->AHL20(2)              <---------MYB46(3)    <---------AHL20(2)--------->ETT(1)                    <---------AHL20(2)              --------->MYB52(2)   <---------YAB1     <---------DEAR3(1)                <---------AHL20(1)              <---------MYB52(1) ---------RVE1(1)    --------->RAP2.6(3)                <---------AHL20(2)            <---------ANAC58 --------ARR11(3)   <-----------HVH21                  --------->YAB1                 <---------ANAC58 ------->ARR11(3)  <-----------RAV1(1)                <---------YAB1            --------->ARR11(3)--- --------GLK1(2)------->TEIL       --------->ZAT2   --------->YAB1         --------->AHL20(2)   ----- ---->DOF2 <----------DOF2         <---------ZAT2----------->GT1           <---------AHL20(2)<-------   agatttttattttctttgtatctgtcggctatgtccaagcttggctatgttttgttataatattttattggagttatatatatatcatgcgttagttgtt  14385400     ----------->GT1  ------>MYB46(1)                                               --------->TGA1a  ------>MYB83                                        ====================bZIP_DOF <---------ALFIN1                                     <---------DAG2 -------->MYB46(3)                                <---------RAP2.6(2)    <---------ALFIN1 >>>>>>>>>>>>>>>LFY               <---------AHL20(2)  <----------DOF2<---------At4g35610 ------WRKY18(1)                 --------->AHL20(2) <------NtERF2    --------->At4g35610 ---->WRKY38(1)              <---------YAB1  <---------ANAC58   <---------TGA1a              -------- ------>PCF2               <-----------GT1   <---------ANAC58   <---------ANAC58         --------->AtMYB61 ---->WRKY12        <---------At4g35610   ================================bZIP_DOF    --------->ANAC46 --MYB46(3)         --------->At4g35610   <----------DOF2       <---------ANAC58    <-----------GT1   gacccactggttacttcttgatagctgtattaccattttatattctttcttggccgcttttttcagtcgtgagcagcacttatgttatacacctccaggt  14385500                     --------->ARR14(2)            <---------------AGL15            --------------->AGL15            --------->HSFB2a(2)            <---------HSFB2a(2)           <-----------------AGL1                                              <---------TOE2(2)           ----------------->AGL2                                              <---------TOE1(2)           <-----------------AG                                             --------->ANAC46           ----------------->AGL1                  <----------DOF2    --------->YAB1     ---------->ID1  <---------ARR14(2)   <----------DOF2             --------->TOE2(3)        ------   <-----------RAV1(1)              --------------->AtSPL8            --------->TOE1(3)        ------ ->LBD16  -------->P<------ZmHOX2a(1)  <-----------GT1          <---------ZAT6<-----------RAV1(2)  *TSS   caattttgttgctaccagaagaggaaatgggcatagactttgtactttctagtcttttgtgtttttgtgttatcttaaacgcaggttgtctgtttttctg  14385600                                                                       --------->ATHB12                                                                      <---------MYB52(1)       --------->ZAT2                                                <-----------TGA1       <---------ZAT2                    --------->ZAT18             --------->LBD16       --------->At4g35610               <---------ZAT18             <-----------HVH21       <---------At4g35610             --------->At4g35610          --------->ANAC46  --------->YAB1                       <---------At4g35610          --------->ANAC55(2) --------->ICU4                        --------->ZAT2            <-----------GT1 ----->HVH21                           <---------ZAT2        ------>ZmHOX2a(1) ----->TGA1   <----------DOF2    --------->TOE1(2)           <----------DOF2            <------------   acgatgatgagctgagctttacaaaataagaagaacatgggagctcactctgtttttctcatccttttttccgtcattgccattgccattgtagtacatg  14385700               <---------ANAC58               --------->MYB52(2)               <---------ANAC58               <---------ANAC46              <-------TEIL        <---------ZAT2       --------->ANAC58                                                                    --------->ARR11(3)       --------->ANAC58                                                                    <---------ARR11(3)       --------->AtLEC2                   ------>ZmHOX2a(1) --------->ATHB12               <---------GLK1(2) ---AtSPL8 <---------HSFB2a(1)        <-----------GT1      <---------YAB1     --------->YAB1   gccaaggccaagcaggttcgtgagtctcattctcgcttattttcctctgttagagtctgttttgatttgaaaatgagcaatcttcagaccaaagattttt  14385800                                             <---------ICU4                                             --------->ATHB12                                            <---------YAB1                    <----------DOF2         --------->ICU4         --------->MYB59               <---               <-------GAMYB             <---------YAB1      <---------YAB1              <---------WOX13(1)              <---------MYB46(3)     --------->ZAT14      <---------YAB1               --------->ATHB12           <-----------RAV1(1)       <---------ZAT14 ----------->HVH21                <---------YAB1<   gaagttttgatatatgtggttgcattttggccaaaaccgtgttctgattattggtttgacatgataagtgaggtccaagtctgtttctatgattgaatgc  14385900                                                                         <---------MYB52(1)                                                                 --------->YAB1                                                              --------->WOX13(1) -------DOF2 <---------AHL20(2)                              <---------AHL20(2)          <-----------RAV1(2) ---------TOE2(3)               <---------YAB1               --------->AHL20(2)   ----------->RAV1(2)   tttaggttctaaaatttaaacctgcattggaattttgatgaaaattttctcaacgttgtagaattaatcaaaacccttaccttcttctggtccaggtttc  14386000                                                                             <----------DOF2                   --------->DEAR3(1)                                       <---------DAG2                  --------->ANAC58                                        ------->TEIL                  --------->ANAC58                               --------->TOE1(2)              <-----------HVH21       <---------ETT(2)           <---------LBD16              <---------PCF2        --------->REM1(2)           ----------->RAV1(2)       <---------GLK1(2)      <-----------GT1                 --------->REM1(1)             --------- --------->At4g35610       --------->YAB1    --------->YAB1   <---------ALFIN1  --------->YAB1   <---   atcagcatagattgtgggtcaccccctaatattaactatgtagacactgatactggtatcagttacacctgggatgcacctttcatcaacgctggagtaa  14386100  Previous    Next  AGI:  At4g29170.1    Description:  ATMND1. similar to Os09g0280600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062766.1); similar to hypothetical protein OsI_029652 [Oryza sativa (indica cultivar-group)] (GB:EAZ08420.1); contains InterPro domain meiotic nuclear division protein 1 (InterPro:IPR005647) Range:  from: 14382845    to: 14385381    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g29180.1    Description:  leucine-rich repeat protein kinase, putative. similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G29450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45781.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45750.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine-rich repeat; (InterPro:IP Range:  from: 14385599    to: 14389695    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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