Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->ARR11(3)          <---------ARR11(3)   <------ZmHOX2a(1) <---------TOE2(3) ------ZAT14                                                       --------->ANAC58 ------At4g35610                                                   --------->ANAC58 ----->ZAT2                                           <---------CCA1(2)               <---------ANAC58 ----->At4g35610                              <---------ARR11(3) ---------->DOF2      <---------ANAC58 ------ZAT2                                   --------->ARR11(3)--------->YAB1<---------ATHB12 >ZAT18>>>>>>>>>TBF1<----------DOF2         <---------TOE2(3)--------->YAB1 --------->WOX13(1)   gctgaggaagaagaactcgctgcattacaggctgagatggccctctaaggtctcttctatctataatcaaagcaaaatcaatcaatttgcttacagacta  14382400                                          <-----------RAV1(2)                                     <-----------GT1                                            <----                                <------MYB46(1)                                              --------           <-----------GT1      <------MYB83                                                 --------          --------->AHL20(2) <---------ANAC58                 <---------ZAT2             --------->ANAC58         <---------AHL20(2)  <---------ANAC58                 --------->ZAT2       <---------WOX13(1)   ----------->GT1           <---------ANAC46      <-----------GT1        ------->TEIL   --------->ANAC58   tggatttgtaatttaactagttttgcaattggcttggtttaactgcaggttattcacctctccgagcagagacatgtatgcattgatagacacgaacaga  14382500             ------>ZmHOX2a(2)            --------->At4g35610            <------ZmHOX2a(2)           --------->ARR14(2)           --------->ARR11(3)           --------->GLK1(2)                                        --------->At4g35610           <---------ARR11(3)                                       <---------At4g35610          <------ZmHOX2a(1)                                   <---------TOE1(3)           --------->ANAC46        <---------TOE2(3)                                     <---------TOE2(3)           --------->ANAC55(2)   ------->TEIL    --------->YAB1                            <---------DOF5.7(2)  <---------ZAT14 -----------------WRI1  --------->AHL20(2)<----------DOF2  --------->DOF5.7(2) <---------ANAC46 ->DEAR3(2)<---------ARR14(2)     ----------->GT1     --------->ANAC46         <---------ANAC58  <--- ->MYB46(3)<---------AGP1   <---------LBD16  --------->YAB1<---------MYB52(1)  <---------ANAC58 <----   cgatgtatataaggatctgaatcagattaattcggagcgaaaaacttttataatccccgtcgttaatgttatctgcaatttgagtgttcttcacataatt  14382600                                                       <---------ZAT14                                                       --------->ZAT14                                                      <----------DOF2                                                   <-----------GT1                                                <---------ICU4                                            >>>>>>>>>GT-1                   <----------DOF2       <---------MYB46(3)                  <-----------------AGL3 ----------->GT1           <-------TEIL         --------->ICU4        <----------DOF2  --------->YAB1 <---------TOE2(2)                <---- <----------DOF2------->TEIL   <---------DAG2  --------->ICU4  <---------TOE1(2)       --------->ZAT6 --------GT1--------------->AtSPL8     <---------MYB52(1)     ------>ZmHOX2a(1)----------->RAV1(2) -----AHL20(2) <---------CCA1(2)      <----------DOF2 <---------DAG2      <----------DOF2     -------   tatcttttgtaatttttgtatctttttatgacactttttcctttggttaataatcactttactcctatgttcatcactttcgcctgataagactactcat  14382700                                                                                     ----------->GT1                                                                             <---------ANAC58                 --------->WRKY12                  <---------------AtSPL8    <---------ANAC58                 --------->WRKY38(1)               --------------->AtSPL8    <---------ANAC46                --------->DOF5.7(2)             <---------MYB52(1)       --------->LBD16             <-------TEIL                      <---------RAP2.6(3)      <---------ANAC58            -     --------->WOX13(1)                       <---------ANAC58          <---------ANAC58           <-    <---------WRKY38(1) <---------At4g35610   <---------ANAC46          <---------ANAC46           --   <<<<<<<<<WRKY6--------->WRKY45        <---------ICU4      <---------AHL20(2)     <---------TOE1(3)   --------->WRKY18(1)<---------ZAT14 --------->YAB1        --------->AHL20(2)      <---------TOE2(3) -----YAB1 --------->ARR14(2)     --------->MYB46(3)     --------->TOE2(3)  ---------->ID1         -- -->YAB1   <---------ARR14(2)<----------DOF2  <---------ANAC58 <------------CBF <----------DOF2   ---   gaatagtcaaccatatacgttgacttcgctgctttaacaaacatcatgccgttttggtaccataaaattggactccgtgtcgttttaaggttaaattcaa  14382800         --------->AHL20(2)                  *TSS <------------CBF                            <----------DOF2 -------->ATHB12                           --------->LBD16 --------AHL20(2)                  --------->YAB1 ------->AHL20(2)              ----------->GT1 ------->AHL20(1)       --------->DAG2   ------->GAMYB                                              < ------>AHL20(2)       ---------->DOF2<-----------GT1             --------->HSFB2a(2)       ---------   attaattggaataaaaaatgaaacagaaagcgagggataataacccgcttaagttttcaaggcttcttctacaattctctcatttcgaatttgataaaga  14382900                                                                                             --------                                                                                     <---------YAB1                                                                                  <------ZmHOX2a(2)                                                                                 --------->ARR11(3)                                                 <---------GLK1(1)               <---------ARR11(3)                                                 --------->GLK1(1)      <------ZmHOX2a(1)--------->YAB1                                  <---------REM1(1)                  <-----------RAV1(2) ----------->GT1 ------ZmHOX2a(1)               <---------At4g35610   ------>ZmHOX2a(1) =================HOX2a_HOX2a ->DOF2                         --------->At4g35610   ===================================HOX2a_HOX2a   gaggagacgatagtgagggaagagagtgagagagagctgtagcagtgtttgaaatcctttggattgcatcaccaggagcaagagatcacgatggtaatat  14383000                                                                          <------ZmHOX2a(2)                                                                         --------->ARR11(3)         --------->HSFC1(2)                                              <---------ARR14(2)         --------->HSFB2a(1)                                             --------->ARR14(2)         --------->KAN4(1)                                        --------->LBD16         <---------HSFB2a(1)                                      ===============HOX2a_HOX2a         <---------HSFC1(2)                                       ------>ZmHOX2a(1) --------->KAN4(2)         <---------KAN4(1)                                       --------->TOE1(2)<---------YAB1        <---------KAN4(2)                                        <---------LBD16  --------->ICU4        ------->TEIL  <---------YAB1      ------->TEIL   <---------ZAT18 <---------ARR11(3) <-------- --->ARR10--------->KAN4(2)            <---------ATHB12 <XXXXXXXXXXXXXXXXXXXXMIR825<---------KAN4(1)   actctggacgaatgttctctacttgtgattttgtttcgctaatgaacctctgtgatttgtgcattttcctgggaagatcgagtgattattctctatgatt  14383100                            ------>ZmHOX2a(2)                          <---------ARR11(3)            <---------ARR11(3)            --------->ARR11(3)   <---------ANAC58     --------->YAB1       --------->ARR11(3)     ----------->GT1      <-----------ARR10                              --------->ATHB12   ------->TEIL   --------->ZAT6 <---------ANAC58                       --------->ICU4 -YAB1 <---------YAB1 --------->YAB1 <---------YAB1        --------->GLK1(2)            -------------   ctatgaatcgtgattatcttacactgatgatcttagcttgtgattcttcgacttacaagagaattttggatgtattgattcgacctatttgtttgaatgt  14383200             <---------ANAC55(2)                                                   <---------ANAC58             <---------ANAC46                                                      <---------ANAC58             --------->ANAC55(2)                                                   <---------ANAC46             <---------ANAC55(1)                                            <---------CCA1(2)          <---------MYB52(1)                                          --------->ICU4--------->LBD16 -------->WRI1             <---------------AGL15               <---------MYB52(1)  --------->ANAC55(2)   ttagtagtcatcgttatgtgtttctcttactcttcgaagaaatttgtttaaacttatcgttcatcggtagtaatgtttctatcttccgtagttcattaca  14383300  Previous    Next  AGI:  At4g29160.1    Description:  SNF7.1. similar to SNF7.2 [Arabidopsis thaliana] (TAIR:AT2G19830.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68229.1); contains InterPro domain Snf7; (InterPro:IPR005024) Range:  from: 14380759    to: 14382672    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g29170.1    Description:  ATMND1. similar to Os09g0280600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062766.1); similar to hypothetical protein OsI_029652 [Oryza sativa (indica cultivar-group)] (GB:EAZ08420.1); contains InterPro domain meiotic nuclear division protein 1 (InterPro:IPR005647) Range:  from: 14382845    to: 14385381    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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