Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->YAB1                               ----------->GT1          ===========================HOX2a_HOX2a                             --------->YAB1             <------ZmHOX2a(1)      ---------->DOF2                    --------->ANAC58                ---------->DOF2          --------->YAB1     <----                    --------->ANAC58       ----------->GT1    <---------AHL20(2) --------->DAG2------ -------->YAB1      ----------->GT1 --------->AHL20(2) ----------->GT1      <------ZmHOX2a(2)  <-----   aatcagaaaaacaaaattcaacaagttacaagaatgaaaaaaatagggataaaaaaaaggataattcatttacattcgatcaaaaggcgaatgcatagat  14340600                                                    --------->ANAC55(2)                                                --------->AHL20(2)                                                <---------AHL20(2)                                                --------->YAB1                                            <---------AHL20(2)                                           --------->AHL20(2)                                       -       --------->ANAC58                 <---------AHL20(2)                                 <---------AHL20(1)       --------->ANAC46                 --------->AHL20(2)  --------->ARR11(3)             <---------ARR11(3)       --------->ANAC58                --------->AHL20(1)   --------->AHL20(1)             --------->AHL20(1)    <-------TEIL                       <---------AHL20(1)   <---------ARR11(3)             --------->ARR11(3) --ZmHOX2a(2)                <-----------GT1--------->AHL20(2)                          --------->AHL20(2) --->ARR11(3)        ----------->GT1   <---------AHL20(2) --------->AHL20(1)  --------->ANAC46      < ----ARR11(3)      <-------GAMYB       --------->AHL20(2) <---------AHL20(1)  <-----------GT1      <-   catagatgcaagacacttgtgagttgtgatataaccaaaaatttatttaattatatgtaatatatattcgaaaaatttatacaccgtatataaaatattc  14340700                                 <---------ANAC58                                 <---------ANAC58                         <---------ARR11(3)                         --------->ARR11(3)                         --------->AHL20(1)                          ---------->DOF2           <----------DOF2  <-----------GT1                      --------->YAB1             ---------      <----------DOF2    <---------AHL20(1)                     <---------AHL20(2)          ---------      ------>ZmHOX2a(1)<---------AHL20(1)                   <---------AHL20(2)      <----------DOF2 --------->YAB1        --------->AHL20(1)                   --------->AHL20(2)     <---------DAG2 --------->KAN4(2)     <---------ARR11(3)               --------->AHL20(2)      <---------ALFIN1  <-- -------->KAN4(1)      --------->ARR11(3)              --------->AHL20(2)      --------->MYB46(3) <-- ---------KAN4(1) --------->AHL20(2)                   <---------AHL20(2)     -------->P   ------>NtERF2 --------KAN4(2)  <---------AHL20(2)     <-----------GT1<---------AHL20(2) --------->At4g35610 <-----   gaataatccttttctttgatttaaaaatattttctgcttgttttctcaactcatgtattaatttaaataataaaagtagctaccacctttctctgcccca  14340800       --------->DAG2  <---------TOE1(3)  <---------YAB1                             --------->AHL20(2)                                     -  <---------TOE2(3)                      --------->AHL20(2)                                    <----- >ANAC46                              --------->DAG2             <---------AHL20(2)          -------- >PCF2---------->DOF2           ----------->GT1             --------->AHL20(2)      ----------->GT1 - --------DOF2           ---------->DOF2----------->GT1     <<<<<<<<<ARR2  <---------AHL20(2)<-------- -------DAG2       ----------->GT1   ---------->DOF2--------->CCA1(2)     --------->AHL20(2)--------- ----ALFIN1 ---------->DOF2    ----------->GT1--------->AHL20(1)--------->AHL20(2)---------->DOF2   -   ctttaagataaagctaaagcatggaaaaaagcatgggaaaaaagtaaatatatgatatacaatcaaataaatctaaaaaaatagaaaagaaaaattaaag  14340900      ---------->DOF2                                    <---------AHL20(2) ---------->GT1                                          --------->AHL20(2) ----------AtSPL8             --------->AHL20(2)         --------->AHL20(1) -->DOF2                      <---------AHL20(2)    --------------->AGL15 -------->ANAC58     <----------ID1         --------->YAB1                                          - -AHL20(2)         ---------->DOF2         --------->AHL20(2)                                     <-- >AHL20(2)    ------------------------>ANAC81  <---------ICU4 <-----------GT1                   <---- -------->ANAC58<------ZmHOX2a(1)        --------->YAB1 --------->AHL20(2)            <------ZmHOX2a(2)   gaacgaaaaaaagagggaggaaaaagacaaaattaaaaaacaaaaataaaaattccaaaaaaattaacatcacatgttatcaaatgagatcaaaatttaa  14341000      *TSS                                     ---------->DOF2 -------->MYB52(2)                          <---------At4g35610 -------MYB52(1)    <----------DOF2         --------->At4g35610                      <---------YAB1 -----TOE2(3)<-----------GT1      --------->ZAT6          <---------ALFIN1   ---------->DOF2   gttagttttgagttttctctctctttctcttctctaaaactacttaagctaaagaatcaaacacttctcaacgtttctccaaagcctctgattagtaaac  14341100                                                                                               <-----                                                                                <---------At4g35610--                                                                                <---------ZAT2 ------                                                                                --------->ZAT2<------NtERF2                                                                                --------->At4g35610--                                                                             <---------At4g35610<----         ------>ZmHOX2a(2)                                                   --------->At4g35610-----        <------ZmHOX2a(2)                                                --------->ARR14(2)  --------       >>>>>>>>>GATA-2                                                  <XXXXXXXXXXXXXXXXXXXXMIR780.1       >>>>>>>>>GATA-3                                                 <---------MYB46(3)   ---------       --------->ARR11(3)                  <---------YAB1         --------->ZAT18          <---------LBD16       >>>>>>>>>GATA-1               --------->DAG2     <-------GAMYB <---------DEAR3(1)  <---------At4g35610       --------->AGP1              ---------->DOF2     <-----------RAV1(1)<-------TEIL    --------->ZAT2       <---------ARR11(3)        --------->CCA1(2)     --------->ALFIN1<---------DEAR3(2) <------NtERF2       >>>>>>>>>GATA-4        <---------ZAT6         <---------ANAC46 <---------TOE1(2)   --------->At4g35610      --------->GLK1(1)       ----------->GT1        --------->ALFIN1<---------LBD16      <---------ZAT2 ---------->DOF2          <---------ZAT14  --------->ICU4      <---------HSFB2a(1)----------->HVH21<-   acataaagagatctatagagagagagagagtagagataaaaggtgatgaatagaggtgtgttggagagttcgccggttcagcagctgatggcagccggaa  14341200                                    <---------ALFIN1                                    --------->AtMYB61             --------->DEAR3(1)                                   --------->MYB46(3)            --------->ATERF1(1)                                  <---------ATERF1(1)            <------NtERF2                                 --------->RAP2.6(2)             --------->RAP2.3(1)                        <------NtERF2                           <---------RAP2.3(1)                       ------>NtERF2--------->DEAR3(1)          ------>NtERF2                      <---------DEAR3(1)                       --------->DEAR3(1)                      --------->ATERF1(2)                      <---------DEAR3(1)                     --------->ATERF1(1)                     <---------ATERF1(1)                     <------NtERF2------>NtERF2            <-----------RAV1(2)                     --------->RAP2.3(1)               --------->At4g35610                     --------->At4g35610           <-----------HVH21<---------MYB52(1)    <---------WOX13(1)<---------ATERF1(2)     --------->ATHB12--------->ATERF1(1) ----ARR14(2)       <---------DEAR4(2)       ----------->HVH21<---------ABI4(2) ------->TOE1(3)    <---------ATERF1(1)    <-------GAMYB   ============================RAV --->ARR14(2)      <---------RAP2.3(2) <---------ALFIN1<---------At4g35610 <---------ALFIN1 ------->TOE2(3)   <---------DEAR3(1)  --------->DEAR3(1) <---------ZAT2   ----------->RAV1(1) -----GLK1(1)     <---------At4g35610 --------->MYB46(3)  --------->ZAT2 ------>NtERF2             -- ---->GLK1(1)     --------->At4g35610 <---------MYB55(2)  <---------At4g35610                     --- ->LBD16     --------->ANAC58   --------->ZAT18  <---------MYB46(3)<-------GAMYB                  <-- >RAP2.6(2)  --------->ANAC58  ------>NtERF2<---------MYB52(1)--------->RAP2.3(1)           --------- --------------AGL15<---------RAP2.3(1)--------->AtMYB61  --------->At4g35610           ------>ZmHOX2a(1)   accctaattggtggaacgtaagcggcggcatgaggccaccaccaccgttgatgggtcatcagcaggcgccgttgccaccacatatgactcctaataacaa  14341300                                  <---------ALFIN1                                 --------->LBD16          --------->ANAC58      --------->ANAC58          --------->ANAC58      --------->ANAC46             <<<<<<<<<TBF1         <---------LBD16        --------->ANAC58      ------>NtERF2     ------>NtERF2              --------->LBD16       <---------ATERF1(1)    <---------ETT(1)           --------->HSFB2a(2)   --------->DEAR3(1)    ----------->HVH21          <---------HSFB2a(2) --------->LBD16                                  -    --------->DEAR3(1) <---------ALFIN1            <---------ATERF1(1)             --------->DEAR3(1) ------->ARR11(3)    <---------ALFIN1              ------>NtERF2                 <---------At5g28300- ------>YAB1        --------->ZAT18               <---------DEAR3(1)        <<<<<<<<<TBF1   <-------- -------ICU4        <---------ZAT18        ----------------->AGL1     ------>ZmHOX2a(1)<----------DOF2 >YAB1 --------->MYB46(3)      <---------LBD16   <---------LBD16<<<<<<<<<TBF1   <-----------GT1  <---   ttatctccgaccacggatgatgcccactcccttcccgcacttcttgccatctccggcgacttcttcttcttcctcttcttcttcaccgtctttgcctaat  14341400                                 ------>ZmHOX2a(2)                                 ===============HOX2a_HOX2a                                <---------GLK1(1)                                --------->GLK1(1)                               <---------ARR11(3)                               --------->ARR11(3)                              --------->YAB1                             <---------ATHB12                             --------->ICU4                        --------->ANAC58                        --------->ANAC58 -------->TOE1(3)     ---------->DOF2 -------->TOE2(3) <---------ANAC58                    --------->TOE2(3)    <---------MYB52(2) -MYB59           <---------ANAC58       ------>ZmHOX2a(1)               <-----------GT1            - --------GT1      <---------ANAC46     ----------->RAV1(2)         <----------DOF2  <---------CCA1(2)   aaccctaatctctcttcttggcttgaaagcaatgatctccctcctgagtcttggagccttagccaacttcttttgtaactatccctctatctctctccct  14341500  Previous    Next  AGI:  At4g29100.1    Description:  ethylene-responsive family protein. similar to ethylene-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G20100.1); similar to putative protein [Brassica napus] (GB:CAC14433.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 14341006    to: 14344936    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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