Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <----------DOF2                  ------>MYB83         --------->ICU4        <---------------AtSPL8  <---------DAG2                   ------>MYB46(1)        <---------AHL20(2)     --------------->AtSPL8------>MYB46(1)              <----------ID1       --------->YAB1        --------->ATHB12        ------>MYB83           <---------YAB1  ----------->GT1       <---------YAB1          <-----------GT1           <---------MYB46(3)      xxx >ANAC55(2)    <---------TOE2(3)        --------->AHL20(2)          <----------DOF2   <---------MYB59   tgtcatgtataaaaattaagatgagtatcagtgattgtactataaatttttgaccaactttttatttcatctttgtttgttatagggaccaaattacaaa  14311900                         <---------HSFB2a(2)                         --------->HSFB2a(2)                     <---------ANAC58           <-------TEIL                     <---------ANAC46       <---------------AtSPL8                     <---------ANAC58<---------AHL20(2)   ------->MYC3 <---------ANAC58    --------->AHL20(2)                    ------->TEIL   <-------MYC3 <---------ANAC58  <---------ARR11(3)                ------>ZmHOX2a(1)               < xxxxxxxxxxxxx>smallRNA(i)        --------->ARR11(3)            ------->TEIL              ---------->DOF2   caccatgtggtttttgatgcgtttcgtccagacaaagattttatagatggtacatgtactggtatgcatcctaatgtatgtagatggactgcaaaagaag  14312000                    --------->DAG2                                                          <--------              ----------->RAV1(1)                                                           <--------            <------NtERF2                                                          <---------ZAT14            --------->LBD16                                    --------->YAB1      --------->ZAT14           --------->ANAC46                                 --------->WOX13(1)    >>>>>>>>>>>>>>>>>LFY           --------->ANAC58                             <------MYB83         --------->ARR11(3)   ---           --------->ANAC58                             <------MYB46(1)      <---------ARR11(3)   ---          <---------LBD16     <------ZmHOX2a(1)  --------->TOE1(2)         <---------HSFC1(2)     --- ------ZmHOX2a(1)  ---------->DOF2--------->GLK1(2)    <---------AtMYB61   --------->HSFC1(2) -------   aaggagtctatgtccgcaacaaaaagttcgaaggagaatatttcatgtatacatgggatggtccatcaaaacttggaaacatctctccagtgtctgcacc  14312100                                                                                                <----                                                                                                <----                                                  <---------AHL20(2)                            <----                                           ------>ZmHOX2a(2)                         <---------ICU4                                          <------ZmHOX2a(2)     ----------->GT1      <--------ATHB1                                         <---------AGP1         <---------ANAC46     <------------ATHB5                                         --------->AGP1      --------->ICU4          --------->ATHB51 -ZAT14                                  --------->ARR11(3)  <---------YAB1          --------->YAB1 -At4g35610                       <---------ALFIN1--------->AHL20(2)                 -------->ATHB1 ----->P                          ----------->RAV1(1) --------->AHL20(2)            <---------ATHB51 --->MYB46(1)                   ------->GAMYB     --------->AHL20(1)                --------->ICU4 --->MYB83                    -------->P <---------ARR11(3)--------->YAB1           <---------ATHB12 >TEIL  --------->YAB1       <-----------GT1     --------->AHL20(2)     --------->ATHB12    <--------   tacaagtgaatcagaattggactcatcagtctaaccccacatagatctaaaaaaaattatatcatgatgtataatctttggtatcaataattgtatgttg  14312200                                                                                                  ---                                                                                        --------->ANAC58         --------->ANAC46              ----------->TBP                                  --------->ANAC58         --------->ANAC58            <---------AHL20(2)                               ---------->DOF2     --------->YAB1                  <-----------TBP                                ----------------- --MYB46(1)                        <-----------TBP                                  ----------------- -----MYB46(3)       --------->ATHB12--------->AHL20(2)                             <---------HSFB2a(2) --MYB83 --------->ANAC58    <---------MYB59                 --------->AHL20(2)     --------->HSFB2a(2) ---RAV1(1)       <------------CBF<---------ICU4      <---------WRKY45         <<<<<<<<<TBF1---------   gtttcaattacaagcccaactattgtttgggcctaatatttatatatgggccttagtcaaagattaaaaaaaaaacatttcttcttcccaaagccagaaa  14312300                                                                                 <------ZmHOX2a(1)                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                          ----------->HVH21 --------->ZAT6                     --------->TOE1(1)                  --------->TOE1(2) ------>RVE1(1)                --------->ARR14(2)                     --------->YAB1 >AGL1                         <---------ARR14(2)                     --------->ATHB12       ======== >AG                      ---------->DOF2                             <---------ICU4         <------ZmHOX2a(1) -->GT1  *TSS         ---------->DOF2                               --------->GLK1(2)        ========   atatcagtacaagagtacaagagagaaagaaaggaacctcgaactcagagaaattgagagaagagagaagaatcatgggacaaggaccatcgggaggatt  14312400                                                                    --------->DEAR3(1)                                                                  --------->MYB52(1)                                                                 <---------ALFIN1                                                                 --------->DEAR3(1)                                                                 --------->AtMYB61                                                                <------NtERF2                                                                --------->ATERF1(1)                                                                <---------ABI4(2)                                                                --------->MYB46(3)                                                               <---------ATERF1(1)                                                               ------>NtERF2                                                              --------->PCF2                                                             --------->ATERF1(1)                                                             <------NtERF2                                                            ------>NtERF2                                                            <---------ATERF1(1)                                                            <---------DEAR4(2)                                                            <---------RAP2.6(1)                                                            <---------ORA47(2)                                                            --------->RAP2.6(2)                                                            <---------DEAR3(2)                                                            <---------ERF1                                                            <---------RAP2.3(1)                                                           <---------RAP2.3(3)                                                           --------->ATERF1(2)                                                           <---------ATERF1(2)                                                           <---------DEAR3(1)                                                           <---------RAP2.3(2)                                                          --------->RAP2.3(1)                                                          <------NtERF2                                                          --------->ATERF1(1)                                                         ------>NtERF2                                                         --------->LBD16                                                         <---------ATERF1(1)                                                         <---------DEAR4(2)                                                         <---------ORA47(2)                         <---------MYB46(3)              <---------RAP2.3(1)                        <---------AtMYB61               <---------RAP2.6(2)                 --------->GLK1(1)                      <---------RAP2.3(2)                 <---------GLK1(1)                      <---------RAP2.3(3)             ------>ZmHOX2a(2)                          --------->ATERF1(2)            <------ZmHOX2a(2)                           <---------ATERF1(2)                         -           <---------ARR14(2)                           <---------DEAR3(1)                      <----           --------->ARR14(2)                           --------->DEAR3(1)            --------->ANAC58          --------->GLK1(1)                            <---------LBD16                --------->ANAC58          <---------GLK1(1)<---------ANAC46            --------->ATERF1(1)          <------ZmHOX2a(1) ==================HOX2a_HOX2a       ---------->DOF2   --------->DEAR3(2)   --------->REM1(2)   ----- ===================HOX2a_HOX2a  --------->CCA1(2)    <---------At4g35610<---------ANAC46---------->DOF2   gaatcggcaaggagatcggaaacctgatggtggagataagaaagagaagaagtttgagccggcggcaccaccggctcgtgtagggaggaagcaaaggaag  14312500                  <------NtERF2                  --------->ATERF1(1)                 <---------RAP2.3(1)                 <---------ATERF1(1)                 ------>NtERF2                 <---------DEAR4(2)                 <---------ERF1                <---------RAP2.3(3)                <---------ANAC46                <---------RAP2.3(2)                <---------DEAR3(1)                --------->ATERF1(2)                --------->DEAR3(1)                <---------ATERF1(2)               --------->RAP2.3(1)               --------->DEAR4(2)               --------->DREB2C(1)               <---------At4g35610               --------->At4g35610              <---------ORA47(2)              <---------RRTF1(1)              <---------ATERF1(1)              <---------DEAR4(2)              <---------ERF1              <---------RAP2.6(1)              <---------RAP2.3(1)              ------>NtERF2             <---------DREB2C(2)             --------->ATERF1(2)             <---------RRTF1(3)             <---------RAP2.6(2)                                   <---------------AGL15             <---------RAP2.3(2)                                   --------------->AGL15             <---------RRTF1(2)                                   <-----------------AGL1             <---------ATERF1(2)                                  <-----------------AGL2             <---------DEAR3(1)                                   <-----------------AGL3             <---------RAP2.3(3)                               <---------ARR14(2)             --------->ALFIN1                                  --------->ARR14(2)            --------->ATERF1(1)                               <---------MYB52(1)       --------->YAB1            <---------ABI4(1)      <---------ATERF1(1)       --------->LBD16         <---------TOE2(3)       <-----------RAV1(2)     <---------DEAR3(1)          <---------LBD16        <------ZmHOX2a(2) --------->DOF2<---------ABI4(1) --------->At5g28300    <---------ZAT2            =================== -----At4g35610<------NtERF2----------->HVH21           <---------At4g35610   --------->ANAC58 ---->At4g35610--------->ATERF1(1)----------->HVH21     --------->At4g35610   --------->ANAC58<------   cagaaagggccagaggcggcggcgagacttccgacggtgactccgtctactaagtgtaagctccggttactgaaattggaacggatcaaggattatttgt  14312600                                                                                   ------>ZmHOX2a(2)                                                                                 <---------ARR11(3)                                                                     ------>ZmHOX2a(2)                                                                    <------ZmHOX2a(2)                                                           <------ZmHOX2a(1)<-------TEIL                                                           =================HOX2a_HOX2a                                                           ===============================HOX2a_HOX2a                                                     --------->ZAT2 --------->CCA1(2)                                                     <---------At4g35610<---------TOE1(3)                                                     --------->At4g35610<---------TOE2(3)                                                     <---------ZAT2<---------ARR11(3)                                            <------ZmHOX2a(1)      <---------AGP1<-----------ARR10                     --------->GLK1(2)      ================================HOX2a_HOX2a                  <---------ANAC58          ===============================HOX2a_HOX2a                  <---------ANAC46       <-----------RAV1(2)       --------->ARR11(3)     <------ZmHOX2a(1)<---------ATHB12   <---------LBD16   ================HOX2a_HOX2a       -------- ===========HOX2a_HOX2a       ----------->GT1     ---------->DOF2  --------->AGP1--------->ARR11(3)<- ---MYB46(3)      <---------ANAC58     --------->TOE2(3) <---------TOE2(3) <--------P   -------------   tgatggaggaagagtttgtggcgaatcaagagaggttgaaacctcaggaagagaaagctgaggaagatagatctaaggttgatgatcttcgtggtacacc  14312700      <---------ANAC46                 --------->ANAC58   --------->ALFIN1                    --------->ANAC58   <---------ZAT6                      --------->ANAC46 ->REM1(1)                <---------WOX13(1)              <-------GAMYB                    ------>ZmHOX2a(1) --------YAB1           --------->ATHB12                 <-----------RAV1(1)               ========== -->AtSPL8 <---------ARR14(2)      --------->GLK1(2)<<<<<<<<<TBF1            <---------MYB52(1)     -   tatgagtgttgggaatttggaagagttgattgatgagaatcacgctattgtttcttcttctgttggacctgagtactacgttgggattttgtccttcgtt  14312800  Previous    Next  AGI:  At4g29040.1    Description:  RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A); ATPase. similar to 26S protease regulatory complex subunit 4, putative [Arabidopsis thaliana] (TAIR:AT2G20140.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78907.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABD32889.1); similar to 26S proteasome subunit 4-like protein [Brassica napus] (GB:CAC14432.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959); contains InterPro domain 26S proteasome subunit P Range:  from: 14312309    to: 14314606    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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