Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->ANAC55(2)                 <---------ANAC46                 <---------ANAC55(2)                 ----------->GT1            <---------ANAC55(2)            --------->ANAC55(2)               <----------DOF2 <---------AHL20(2)                      <---------At4g35610 ---------AHL20(2)                       --------->At4g35610                               --------->TOE2(3) -------->AHL20(2)--------->TOE2(3)     --------->ANAC46         --------->DAG2            <--------- --------YAB1  --------->MYB52(1)   <-----------GT1             ---------->DOF2         <-----------GT1 -----YAB1 <---------TOE2(3)      <----------DOF2     ----------->GT1          ----------->GT1 ---->GT1 --------->MYB52(1)      <---------DAG2 --------->AHL20(2)        <---------ARR14(2)   tattaatttcaataacgtaacgtaaaactctgaatactttaccagctacttttatatagttaacaaaaaagtatgccaatactgtatatataactttagt  14309900                                                           <---------AHL20(1)                                           <---------AHL20(2)  <---------AHL20(2)                                           <---------ICU4  <---------AHL20(2)                                          --------->ICU4   --------->AHL20(2)                                      <---------AHL20(1)  --------->AHL20(2)                      ---                                --------->TOE1(3)<----------DOF2<---------AHL20(2)            <------                                --------->TOE2(3)=================================================MADS_MADS                            <---------MYB52(1)   --------------->AGL15                  <------------                          ----------->GT1 --------->AHL20(2)   <---------AHL20(1)       <------------                       ------------>MYB.PH3(1)<-----------GT1  --------->AHL20(2)     --------->YAB1                  ---------->DOF2   >>>>>>>>>MYB98      --------->TOE2(3)         <---------------AGL15 -DOF2         <---------TOE2(3)<----------DOF2  <---------DAG2--------->AHL20(1) --------------->AGL15   ttaagtaaaactaggttaatgaaagaaacagttactttaacatatttattactttatacattaaatttattcgattatagatttcaaattatagtactgt  14310000                                                                                   --------->AHL20(2)                                                                           <---------ALFIN1                                                                           --------->AtMYB61    <-----------GT1                                                        ----------->RAV1(1)    --------->YAB1                                                        --------->ANAC46 --------->YAB1          <---------AHL20(2)                             --------->REM1(1)           < <---------ICU4       --------->YAB1                                    --------->ZAT6            <-- ------>YAB1    --------->TOE2(3)         --------->ANAC55(2)           --------->ANAC46         <--- ---ZAT6     --------->ANAC46             <---------ANAC55(2)       <---------ANAC58          <------ ---AtSPL3>>>>>>>>>RAP2.2--------->AHL20(2)                         <---------ANAC58   --------->YAB1 ---AtSPL8--------->TOE2(3)        --------->AHL20(2)         --------->ZAT6--------->ZAT14   -------   tcataatcacaatctaaaccacaatattaaaaaaaaaaaaaatcacataataaactcaaaactaatactagcttacaccacagtataaattagaattttt  14310100           <---------AHL20(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->AHL20(2)                                                            --------->ANAC46        <---------AHL20(2)                                                            --------->ANAC58        <---------AHL20(1)                         ------>MYB83                       --------->ANAC58        --------->AHL20(1)                         ------>MYB46(1)                    --------->ANAC55(2)        <---------ARR11(3)                <---------TOE2(3)                  --------->TOE1(2)        --------->ARR11(3)      <-------TEIL     --------->AtMYB61           --------->TOE2(2)   --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <-----------GT1    -------- ---------YAB1         ------->GAMYB   --------->AHL20(2)  <---------At4g35610        <---------ANAC55(2) -------AHL20(2)      --------->MYB46(3)<---------AHL20(2) --------->At4g35610  <---------ATHB12 ------AHL20(2)  --------->ANAC58   <---------ICU4 -------->P ------------>CBF  <---------YAB1 ---AHL20(2)     --------->ANAC46  <---------YAB1<---------MYB59     <---------YAB1   --------->ANAC55(1) -->AHL20(2)     --------->ANAC58--------->YAB1 --------->MYB46(3) --------->YAB1--------->YAB1   ttatttttaatatattatcacacaaccatctagtttcatcatttaatgtgaccaacctttcagcttcaattctaattaacctatgatcacgtaaatgatt  14310200                                         <---------At5g28300  --------->YAB1  --------->YAB1                             --------->YAB1                  ----------->TBP  --------->AHL20(2)                       ----------->GT1  <-----------GT1    <---------------AGL15                ---------->DOF2      <---------ICU4        --------------->AGL15               <---------ICU4--------->AHL20(2)    <----------DOF2       ------------>CBF     xxxxxxx              <---------YAB1 <---------ICU4        <---------DAG2    ----------->GT1       ---------- ->ATHB12    --------->TOE2(3)    --------->YAB1<-----------GT1 ---------->DOF2           ------>ZmHOX2a(1)   tgcagcatgactcttcattaatgcgatgtaataatatcaaaattaccgtttcactttcccactataaaaagaagtaacaataaaaattcttcctaaagtt  14310300                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                  ---                                                                                                  <xx                                                                                                 ----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              -------              --------->AHL20(2)                                                              -------        --------->LBD16                                                                      <------NtERF2        ----------->GT1                                                                      --------       --------->LBD16                                                                      ---------       --------->ANAC58                                                                     <--------       --------->ANAC58                                                                     ---------       --------->ANAC46                                                                     ---------    <---------WRKY18(1)                              <----------DOF2              <xxxxxxxxxxxxxxxxxx <---------ANAC58                                   <---------ANAC58           <------ZmHOX2a(2) <--- <---------ANAC58  --------->AHL20(2) --------->ARR11(3)       <---------ZAT6 <---------ARR11(3) ---- xxxxxxxxxxxxxxx>smallRNA(se3)      <---------AHL20(2)   <-----------GT1      --------->ARR11(3) <--- >DOF2<---------LBD16     --------->TOE2(3)         <---------ANAC58        --------->ICU4 <---------LBD16   tttgcttgcccggaaaaaaaatgaattacatcaaacaatttatcttggcaatttgcttttatctagtcttaacatgtcaagatcatgttttagcccgcga  14310400     --------->ANAC46     --------->O2   <---------ALFIN1 ---------ALFIN1 -------->AtMYB61 ------->MYB46(3) --->NtERF2 xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->REM1(1)                                         --------->MYB52(1) >NtERF2                                               <---------DOF5.7(2) ----ATERF1(1)                               --------->MYB52(1) ----->RAV1(1)                     <xxxxxxxxxxxxxxxxsmallRNA(i) -->ANAC46                   <---------GLK1(1)    <--------P ---->HVH21                  --------->GLK1(1)   <-------GAMYB ->LBD16                    --------->ARR14(2) <---------ANAC46 >ANAC58                    <---------ARR11(3) <---------YAB1 -ATERF1(1)                 --------->ARR11(3) <---------TOE1(3) >ANAC46                    <---------ARR14(2) <---------TOE2(3) >ANAC58                   --------->HSFB2a(1)<---------At5g28300     ----------->GT1 xxxxxsmallRNA(se3)     --------->LBD16      ------------>AtMYB77--------->MYB46(3) ------ALFIN1          --------->LBD16       <-----------GT1   <---------WRKY18(1) ----->bZIP60(1)      --------->HSFB2a(2) --------->ANAC58    --------->WRKY38(1) ------bZIP60(1)      <---------HSFB2a(2) --------->ANAC58    ----------->HVH21 <----------DOF2   caccaccacgagagacatcgtagtcccgaagatttccgagtggcaagttacggttgctaacggtttgaccactggtgaaactcttttcatccattgtaag  14310500                                                 <---------ANAC46                                                 <---------ANAC58           <------ZmHOX2a(2)                <---------ARR11(3)                     <----------DOF2          <---------ARR11(3)                --------->ARR11(3)               --------->ANAC58          --------->ARR11(3)     --------->ARR11(3)                          --------->ANAC46   ===============HOX2a_HOX2a    <---------ARR11(3)                          --------->ANAC58   <------ZmHOX2a(1)       --------->TOE1(3)<---------GLK1(2)         <---------YAB1xxxxxxxxxxxxxxxxx <---------TOE2(3)        ----------->RAV1(2)    <---------ANAC58  <---------ARR14(2)           <---- <---------TOE1(3)      <-----------GT1   ----------->ARR10        --------->ARR14(2)     <---------AtMYB61   tctaaggaaaacgatctaggtgatattaacctgaagttcttagatagattttcttggaattttggagaaaatatgcttcactcaactttgttttggtgct  14310600          <---------YAB1        --------->YAB1        --------->DAG2                                                        -       --------->ICU4        ---------->DOF2                                                  -------     ---------->DOF2    ------->TEIL                                  <---------WOX13(1)   --------->ANAC58 xxxxxx>smallRNA(s2) <---------YAB1                                 --------->ATHB12       --------->ANAC58 ------DOF2        --------->At4g35610        ----------->GT1      <---------YAB1 <---------YAB1 <xxx   atatgagcaaagatgatggtcatatgaatgtaaaagtgttttgggatgatgttattctatttcatagatgtgattggaagaattgtgtttggaccgcaaa  14310700                                                            <---------ARR14(2)            <---------YAB1                                  --------->ARR14(2)           <---------ARR11(3)                               --------->GLK1(2)                      <-        <----------DOF2                          <------NtERF2                                     -- <---------ICU4                                --------->ETT(1)                                   --- --------->ATHB12                              <---------ANAC46     <------MYB83             <------MYB83 --------->YAB1     --------->GLK1(1)        <-----------HVH21      <------MYB46(1)          -------- -------->ICU4      <---------GLK1(1)       <-----------RAV1(1)     ----------->GT1          <------MYB46(1) --->DOF2 <---------CCA1(2)           --------->ARR11(3)   <---------GLK1(1)             <---------MYB46(3) xxxxxxxxxxxxxsmallRNA(s)             <---------ARR11(3)   --------->GLK1(1)         --------->ATHB12   gaatgatggcctttatctttggaattctgcaatcggtgaagatgtactgtcggagaaatggaaatctggatggtgaaaacatatttttgatttgttggta  14310800  Previous    Next  AGI:  At4g29035.1    Description:  similar to SPH1 (S-PROTEIN HOMOLOGUE 1) [Arabidopsis thaliana] (TAIR:AT4G16295.1); similar to hypothetical protein [Brassica napus] (GB:CAC14431.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 14310321    to: 14310776    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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