Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ------>ZmHOX2a(2)          <------ZmHOX2a(2)         <---------AGP1         <---------ARR14(2)         --------->ARR14(2)         <---------ARR11(3)         --------->ARR11(3)         --------->GLK1(2)        <------ZmHOX2a(1)                                                                        <---     <---------HSFB2a(2)                                                                         ----     --------->HSFB2a(2)                                                                        ----- <----------DOF2                                                            <-------MYC3        <---- ---------ANAC58               <---------------AGL15                        ------->MYC3        <---- ---------ANAC58   --------->TOE2(3)  <---------YAB1 <----------DOF2  --------->YAB1   -------->P<---   ttgctttctaggatctgtatttcttaattgtttctatattttgatcaattttgaacttttcatatcaagttatcaacatgtgtagtagcaacccttcaat  14290800                                                                                               ------                                                        --------->AHL20(2)                  --------- ---------ATHB5                                         <---------AHL20(2)                  <-------- ----->YAB1                                            <---------AHL20(1)    --------->ANAC55(2) ---->ICU4               ------>ZmHOX2a(1)             --------->AHL20(2)    <---------ANAC55(2) -----ATHB51         --------->ARR14(2)                <---------AHL20(2)  <-----------GT1  --------- -----ATHB12         <---------ARR14(2)             --------->AHL20(2)     --------->AHL20(2) <------ ------ICU4   ---------->DOF2 <-----------HVH21 <---------TOE2(3)<---------MYB52(1)--------->YAB1   aatgagaccatggaataaaagcctatcctatatgtcatccagtttttgctaagataaattattttcagttacccaaattacataatcaaaactgatatca  14290900                                                --------->LBD16                                   --------->ARR14(2)                            <---------YAB1     <---------HSFC1(1)                          <---------ICU4       --------->HSFC1(1)     <---------------AGL15  ----------->RAV1(1)     --------->YAB1<---------GLK1(2)     <---------MYB52(1) <----------ID1  --------->ANAC58  ------->TEIL<---------HSFB2a(2)    --------------->AGL15 --->YAB1        --------->ANAC46  <---------ARR14(2)       <-----------RAV1(1) >bZIP60(1)      --------->ANAC58  --------->GLK1(2)    <---------ZAT14 -bZIP60(1)   <---------ZAT18     <---------GLK1(2)     --------->ZAT18    ---------->DOF2<---------ARR14(2) >GLK1(1)     --------->ZAT18--------->MYB52(1)--------->HSFB2a(2)   ----------------->AGL3 --------- ---YAB1--------->YAB1 --------->YAB1 <---------YAB1    --------->ZAT14  --------->YAB1   --------->ARR14(2)   taaacaacaaaaatagcacacacaaaaatcataactgaatctgattcttccagaaatgtgaactgttgtttactataaaaagaagaaaaccagaaccaca  14291000                                                                 ----------->GT1                   --                                                               <------------CBF                 -----                  --------->WOX13(1)                          --------->ICU4               --------->AtMYB61     <-----------GT1 --------->YAB1                       ------------>CBF            <---------WOX13(1) >MYB46(3)     ------->TEIL     ----------->RAV1(1)  --------->MYB52(1)       ---------->DOF2--------   atacatttgactccatgaatcagtcatactagtccaacatactaaatataaaacttaaggggcaatattgaaaattagacaaaagttgatagaccaaaag  14291100       ------------>AtMYB77       --------->YAB1    --------->YAB1                                                               <------ZmHOX2a(1)   <---------AHL20(2)                                                          --------->LBD16   --------->AHL20(2)                                                         --------->HSFB2a(2)  --------->AHL20(2)                                                          <---------HSFB2a(2)  <---------AHL20(2)                                                          <-----------RAV1(2) ------->AHL20(2)   --------->GLK1(2)   <---------STY1(1)            --------->HSFB2a(2) ------>GT1         <---------ARR11(3)  --------->STY1(1)*TSS        <---------HSFB2a(2) -->DOF2      -------->P       --------->O2             ----------->HVH21     <---------LBD16   ataaattaataacagttaccagtatctatcgccaagtctcccctagggttttttttctctgaaacggacatcgagaaattccaggagtgagttttgacaa  14291200                                                ------>NtERF2                                               =================MYC_MYB                                               <---------ALFIN1                                               --------->ANAC58                      --------->ANAC58                                               --------->ANAC46                   --------->LBD16                                               ------->GAMYB                     --------->HSFB2a(2)                                               --------->ANAC58                  --------->ANAC46                                              --------->MYB46(3)         --------->ANAC58  ------->GAMYB                                        --------->REM1(1)                --------->ANAC58  ----------                                        --------->bZIP60(2)             --------->SPL7    -----------                                   --------->ANAC58        --------->At4g35610   <---------HSFB2a(2)                      ---------->DOF2 ----------->RAV1(1)  <---------At4g35610  <---------LBD16                      ==========================================bZIP_DOF<---------TOE1(2) --------->ANAC58               ----------->RAV1(1) --------->ANAC58   --------->TGA1a <---------SPL7 --------->ANAC58              <---------ETT(2)     --------->ANAC46   =============================================MYC_MYB              --------->ETT(2)  --------->ANAC46--------->LBD16      --------->TOE2(1)    --------->MYB46(3)           <---------ANAC46   --------->At4g35610   <---------ALFIN1 --------->TOE1(1)  --------->MYB52(1)      --------->CCA1(2)    --------->At4g35610<---------MYB55(2)    <---------------AtSPL3--------->ANAC58   tcggagagaaatggggtcgacagaaaaagagcagacgacgcaacatcacccgcctcacatcagcagtctcgtcgtacgtccctccggaagcaacgacaga  14291300                   <------NtERF2                  --------->LBD16                 --------->DEAR3(1)                <---------LBD16                --------->RAP2.3(1)                --------->ATERF1(1)                <------NtERF2               --------->ABI4(1)               ------>NtERF2               <---------ATERF1(1)              --------->DEAR3(1)              <---------ATERF1(2)              --------->RAP2.3(2)              --------->RAP2.3(3)              <---------DEAR3(1)             --------->RAP2.3(1)             --------->ERF1             --------->ATERF1(1)             --------->DEAR4(2)             --------->ORA47(2)             --------->RRTF1(1)            <---------ATERF1(1)            ------->GAMYB            ===========================================MYC_MYB           --------->DEAR3(1)           --------->ANAC58           --------->ANAC46         ==============================================bZIP_DOF         ---------->DOF2      --------->ANAC58      --------->ANAC46      --------->RAP2.6(2)      --------->ANAC58                       <---------TGA1a      --------->RAP2.3(2)                    --------->TGA1a                          ----------->HVH21   <---------ATERF1(1)                       <---------O2                           ----------->GT1 <  <---------RAP2.6(2)                        --------->O2                  ------>ZmHOX2a(2)        < --------->RAP2.6(3)             --------->LBD16                          <------ZmHOX2a(2)        <- ->RAV1(1) --------->ANAC58     --------->LBD16   --------->DEAR3(2)     --------->ARR14(2)     <---- >HVH21<------NtERF2           <---------LBD16 ----------->HVH21         <---------ARR14(2)     -----   gaagacggccgcaacgccgccggagactatgagcccggagaagtctctcgtgaccggccttcgtttaatcgctcggatcggtataagggtgacaatggtg  14291400    <---------CCA1(2)   <-----------ARR10   <---------ARR11(1)   <---------ARR14(2)   ------->TEIL   --------->ARR14(2)  <---------CCA1(2)                 ------>ZmHOX2a(1)  <---------ARR14(1)                --------->LBD16 ---------ANAC58                  ----------->RAV1(2)                        <---------ANAC46 ---------ANAC58            <----------DOF2                      <---------GLK1(1) ------TEIL               ------>ZmHOX2a(1)          --------->ATHB12       <---------LBD16 -----MYB46(3)          <---------ZAT18             <---------YAB1  <-----------------AGL2 ---->MYB55(2) <---------ICU4     <---------LBD16   <---------MYB52(1)     --------->ALFIN1   gttcgtatctcttctaaacattccagtcctcttttctcctgagtttctcttctcgttattggtttcgatttctgaaattgggggaatgaagaacagaact  14291500                                                                                   ----------------->AGL1                                                                          <---------ANAC58                                             --------->ANAC46             <---------ANAC58         <-                               <---------ANAC58                           <---------ANAC46         <-                               <---------ANAC58                        --------->WRKY12  --------->ALFIN1                    --------->ZAT6    <---------WOX13(1)             <----------DOF2 <---------At4g35610                 <----------DOF2   <---------YAB1              <-----------GT1<---------YAB1       <-   aagtaggcatcacttgtttctttcactacaaatgcttgtgattgtctacgtcttagtcaatgttttatctcctttgacttgtgattccgatgaggggaat  14291600                                    <---------TOE2(3)                                  ---------->DOF2                               --------->TOE2(3)                       <---------ANAC58            <---------ANAC46   --------->YAB1  <---------ZAT14      <---------ANAC58                                   ----------->GT1 --------ANAC58        <------MYB46(1)      --------->YAB1      --------->YAB1 --------ANAC46        <------MYB83 <---------TOE1(3)  --------->YAB1   <---------ANAC46          <-- --------ANAC58       <---------MYB46(3)   <---------YAB1    --------->YAB1                       <--   tgtgtgtagttatctcgtgagcatttggtgctatcttaaaggtttttgataatgctctcataactataacaatgctgtgtaaattgcaaatgagcattgt  14291700  Previous    Next  AGI:  At4g28980.1    Description:  CAK1AT/CDKF;1 (CDK-ACTIVATING KINASE 1AT); cyclin-dependent protein kinase activating kinase/ kinase/ protein binding / protein serine/threonine kinase. Identical to Cyclin-dependent kinase F-1 (CDKF-1) [Arabidopsis Thaliana] (GB:O80345); similar to CDC2/CDC2A/CDC2AAT/CDK2/CDKA1/CDKA,1 (CELL DIVISION CONTROL 2), cyclin-dependent protein kinase/ kinase/ protein binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G48750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65499.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); Range:  from: 14288445    to: 14290712    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g28990.1    Description:  RNA-binding protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO65501.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 14291157    to: 14293180    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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