Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->bZIP60(2)                                                               -                  --------->ANAC46                                                                  <         ---------->DOF2                 <---------MYB52(2)                                        --      --------->ANAC58                  <---------At4g35610               --------->GLK1(1)        --      --------->ANAC58     <---------ALFIN1--------->MYB52(1)             <---------GLK1(1)        --    ---------->DOF2 --------->ZAT14     --------->ZAT2                 --------->LBD16             <- -------->GT1   --------->ANAC58        <---------ZAT2                <---------HSFB2a(2)          <- -------AGL3    <---------ALFIN1        --------->At4g35610    --------->YAB1--------->YAB1        <- -------AGL1    --------->ANAC58    <-----------HVH21  ---------->DOF2--------->HSFB2a(2)      ------   tggaaacaaagcaaagacacacatcactcacacttgtatgtcagctaacaaaaaaaaaaaaggaatcaaaatccagaaatcagagtgagagatagcacaa  14266300                                   <---------At4g35610                                   --------->At4g35610                             ------>ZmHOX2a(2) ------>ZmHOX2a(2)          <------ZmHOX2a(2) -------->CCA1(2)          <---------ARR11(3) ------ZmHOX2a(2)          <---------AGP1 ------->ARR11(3)          --------->ARR11(3)                                             --------->YAB1 ------->AGP1              --------->AGP1                                          <------ZmHOX2a(2) ------->ARR14(2)          --------->ARR14(2)                                     <---------ARR11(3) --------ARR14(2)          <---------ARR14(2)    --------->TOE2(2)            ---------->DOF2  ------ --------ARR11(3)         <---------CCA1(2)    <-------TEIL              <----------DOF2 <---------ATHB12 --------AGP1 --------->ANAC58  <---------MYB52(1)              <---------ATHB12  --------->ARR11(3) ---->DOF2    --------->ANAC58 <-----------HVH21 --------->TOE1(2)    <-----------GT1    --------->ICU4   agatctagtaactgataagacactatgcagatctgtcagctaaacgagctacatacgaagaaacaaatcaattgactttctaaagatcgaaatcatcaaa  14266400                                                      ---------->DOF2                                                      <---------ICU4                                                      <--------ATHB1                                                      --------->YAB1           --------->YAB1                                                     <---------ATHB51      <---------AHL20(2)                                               --------->ANAC46   <---------At4g35610                                            --------->ZAT14       --------->At4g35610  --------->YAB1                ----------->HVH21    --------->ICU4       --------->AHL20(2)   ------  <---------ICU4  <------ZmHOX2a(2)         <---------ZAT14       --------->ZAT2    ---------->DOF2 ---->DOF2   --------->ANAC46 ----------->RAV1(2)    <---------ATHB12     <---------AHL20(2)  -------   agaatcataacctagacgcgatcagattaaaaccctgacccctaactacacagcaataatgccaaatcagctcaaattaaatcacaataagccgaataaa  14266500                                                                                                   --                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              -------                                                                                              <------NtERF2                                                                                             <<<<<<<<                                                                                             ------>NtERF2                                                                                             <<<<<<<<                                                                                             <-------                                                                                             <<<<<<<<                                                                                             <<<<<<<<                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <<<<<<<<                                                                                             <-------                                                                                             <<<<<<<<                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <<<<<<<<<                                                                                            <--------                                                                                           <------NtERF2                                                                                           --------->RAP2.6(3)                                                                                          <---------ATERF1(1)                                                                                         --------->ALFIN1                                                                                       --------->ALFIN1                        --------->HSFB2a(2)                                            <---------ANAC58                        <---------HSFB2a(2)                                            <---------ANAC58                     --------->GLK1(2)                                                 <---------ANAC46                    <---------GLK1(2)                           --------->MYB46(3)    <------NtERF2<-                 --------->YAB1                     <------ZmHOX2a(1)             --------->ANAC46 -- --->DAG2   <---------RAP2.6(3)                 --------->TOE1(2)         <---------ARR11(3)<-------- --->DOF2  --------->RAP2.6(2)       ----------->RAV1(2) <----------ID1<---------STY1(1) <---------DEAR3(1)   gctaaaacagaagccgaaatcagaatcgagaagatgaaaacctgatgaaaccgaggaagaagacgaacaaaccctagagcttcttcgcagcgtggcggct  14266600     <---------At4g35610     <-------GAMYB     --------->At4g35610 ------------>AtMYB77 ------->HSFB2a(2) ->NtERF2 --->ARR14(2) ----ARR14(2) ---At4g35610                                                                                <------- -->ATERF1(1)                                                                                -------- <AtERF-4                                                                                    -------- <AtERF-5                                                                               <---------YAB1 --ATERF1(1)                                                                          --------->YAB1 <AtERF-1                                                                             --------->ATHB51 <AtERF-7                                                                             -------->HAHB4 --RAP2.3(1)                                                                          <---------ICU4 --DEAR3(2)                                                                           <---------AHL20(2) --ORA47(2)                                                                           -------->ATHB1 <AtERF-2                                                                             <--------HAHB4 --RRTF1(1)                                                                          --------->ICU4 <AtERF-3                                                                            <---------ATHB51 --ERF1                                                                              <---------YAB1 -ANAC46                                                                           -------->HAHB4 -RAP2.3(3)                                                                        --------->ATHB51 -RAP2.3(2)                                                                        --------->YAB1 >ATERF1(2)                                                                        <--------ATHB1 -RRTF1(3)                                                                         <--------HAHB4 -RAP2.6(2)                                                                        <---------ICU4 -ANAC58                                                                          <---------YAB1 -DEAR3(1)                                                    <----------DOF2     <---------ATHB51 -ATERF1(2)                                                  <---------DAG2       <---------ATHB12 <AtTINY2                    <---------LBD16     --------->ANAC58                 --------->AHL20(2) -RRTF1(2)               <----------DOF2         --------->ANAC58                 --------->ICU4 --------HSFB2a(2) --------->ALFIN1             --------->SPL7<---------DAG2    --------->YAB1  <---- ---->ZmHOX2a(1)--------->ATHB12            <---------------AtSPL3           --------->YAB1  <------- -ANAC58   <---------At4g35610     <-------TEIL --------------->AtSPL8      --------->ZAT6<---------AHL20(2)   cctagacagttgcatcagcgattggggcttcttcgggttcggacaactagtacggaccatttcccttttcccttcgtaatactaataattattattttat  14266700                              <---------ANAC58                              <---------ANAC58                            ------->TEIL                            <---------ARR14(2)                    --------->YAB1                            --------->ARR14(2)                   <<<<<<<<<ARR1   *TSS                     --------->ARR11(3)                --------->MYB46(3)                    < --AHL20(1)                <---------CCA1(2)                 ------------>CBF      <-----------GT1  - ->AHL20(1)             ------->MYC3                        <-----------GT1     --------->ARR14(2) -- ->AHL20(2)      <---------ANAC58               <----------DOF2  <<<<<<<<<ARR2  <---------ARR14(2) <- -----------AtSPL8      <-------MYC3      --------->TOE2(3) --------->YAB1  --------->At4g35610  ---- --AHL20(2)      <---------ANAC58  <---------ZAT18     --------->AHL20(2)   <---------At4g35610------   tgtacaattagtttcgatttcgtccatgtgtatcttgtgcattttcttaacttttgaataaataacaatcgtatagtcagcatatatactacatgtttgc  14266800           --------------->AtSPL8        <---------AHL20(2)       <---------ARR11(3)       <---------AHL20(2)       --------->ARR11(3)       --------->AHL20(1)       <---------AHL20(1)       --------->AHL20(2)     ------->TEIL  <---------YAB1 ---------ICU4                                                  ===================================== -------->YAB1                                                  <---------------AGL15 ------->ICU4                                                   --------------->AGL15 --------ATHB12                                                 <----------DOF2 ----->WOX13(1)                                <-------TEIL  <-----------GT1 ------>CBF<---------------AtSPL8 <---------AtLEC2   <---------PCF2  ---------->DOF2   aatcatgaatatatttgtacattgtacatgtccaatgcatgaatagaaatacatgggcccaattttctttttaaagccaaactagtccataactattcac  14266900         <---------GLK1(2)         <---------ARR11(3)         --------->ARR11(3)     ------>MYB83                                                                          <---------     ------>MYB46(1)                                  <---------ARR11(3)    --------->CCA1(2)    ----------->RAV1(1)                               --------->ARR11(3)   --------->ARR11(3)    --------->MYB52(1)                 <---------ARR14(2)                  <---------ARR11(3)     ---   --------->AtMYB61 <----------DOF2   --------->ARR14(2)     <---------ANAC58            <------MYB83  --------->MYB46(3) <---------------AGL15           <---------CCA1(2) ---------->DOF2    <------MYB46(1) -------->P  <-----------GT1          <------ZmHOX2a(1)       <---------ANAC58       --------->DAG2 ====================================MADS_MADS  ----------->HVH21  <---------YAB1   ---------->DOF2   atctaccaacagatttttcatttctttaacaagttttagaggaaacacatatgacatatcttatgcgtttttataaagatatactaaaaagttggtcaca  14267000                                                                                    --------->AHL20(2)                                                                        ----------->GT1                                                                     --------->CCA1(2)                                                                     <---------GLK1(1)                                                                     --------->GLK1(1)                                                                     --------->ARR14(1)                                                                    --------->ARR11(1)                            <---------DAG2                          <---------ARR11(3)                            <----------DOF2                         --------->ARR11(3)                         <---------ALFIN1                           --------->ARR14(2)    <---------AHL20(2)<-----------GT1                               <---------ARR14(2)  <-----------GT1 --HVH21       <-----------GT1  <----------DOF2            <---------ICU4           <---------AHL20(2) -------->GT1XXXXXXXXXXXXXXXXXXXX>MIR398A                ----------->RAV1(1)       --------->AHL20(2)   tagtatataatctatattttctagtcaccactttctttagaatagttggataagagagacaacattacaagatatgctaaaacgatttaattactccata  14267100                                                                                            <--------                                                                                            <--------                                                                                           --------->AHL20(2)                                                                                        --------->AHL20(2)                                                                                        <---------AHL20(2)                                                                                        <-----------TBP                                                                                      --------->AHL20(2)                                                                                      <---------AHL20(2)                                                                                    <---------AHL20(2)                                                                            --------->AHL20(2)                    <---------AHL20(2)                                     <---------AHL20(1)                   <---------AHL20(2)                               ----------->GT1 --------->AHL20(2)                   <---------AHL20(1)                            --------->ALFIN1 <---------AHL20(2)                   --------->AHL20(1)                          <-----------RAV1(1)--------->AHL20(2)                   --------->AHL20(2)                        --------->CCA1(2)  <---------AHL20(2)             --------->ANAC55(2)                            --------->ARR11(3)  --------->AHL20(2)             <---------ANAC55(2)                            <---------ARR11(3)<---------AHL20(2)         <-----------HVH21                              ---------->DOF2    --------->AHL20(1)--------         <-----------TGA1                   ---------->DOF2 --------->ARR11(1)--------->AHL20(2)   tgtgtgtaaatcgtcacttaatttaatacttcaaaatttccttcgaaaaagacatagctaaagatatgtggggataatatatatatatatatatataata  14267200  Previous    Next  AGI:  At4g28910.1    Description:  similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G07250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65474.1); contains InterPro domain Protein of unknown function DUF1675 (InterPro:IPR012463) Range:  from: 14264073    to: 14266703    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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