Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->ANAC58                                                                 --------->ALFIN1                                                                 <-----------RAV1(1)                    --------->HSFC1(2)                         --------->ANAC55(2)                    <---------HSFB2a(1)                        <---------ANAC55(1)                   <---------KAN4(2)                           <---------ANAC58                   --------->GLK1(2)                           <---------ANAC58         <-------TEIL                   --------->ARR14(2)                          <---------ANAC55(2)  ------>ZmHOX2a(2)           <---------ZAT14                                    <----------------------TaNAC69(1)      <---------ZAT6<---------HSFC1(2)                <------ZmHOX2a(1)   --------->ANAC58    --------->MYB52(2)                                =====================================HOX2a_HOX2a  <---------MYB52(1)--------->HSFB2a(1)         ---------->DOF2<---------ANAC46    <----------------- <-------GAMYB   <------ZmHOX2a(1)  --------->GLK1(2)<----------ID1       --------->ANAC46   ttccgttagtgagaacagaggaatcttcttccattgagactctatctctgcaaagaggacaagttgcgtgttgctcaagccactgatcgatacatccgat  14257300                                                                              <---------ARR14(3)                   --------->ANAC58                                           --------->ARR14(3)            <---------REM1(2)     --------->GLK1(2)                           <---------ARR11(3)        --------->REM1(2)         <-----------ARR10                       <---------ICU4     <---------ANAC58   --------->MYB46(3)                                --------->YAB1     ------>ZmHOX2a(1)     <---------ANAC58 ----------->RAV1(1)                                <---------ATHB12  ------>ZmHOX2a(2) ---------->DOF2   --------->ANAC58      <---------ALFIN1              --------->WOX13(1)  ========== ----WRI1   <---------ZAT14      <---------GLK1(2)         --------->MYB52(1) --------->ARR11(3) ----   gtggaaagcgtgtctacacttaggcaacaatctaagaatctcaacactttcgaatttagacaaacagacagaacaatcaagaccttgttttgatcctttc  14257400                                                                                         <---------KAN4(1)                                                                                         <---------HSFB2a(1)                                                                           <---------WRKY18(1)                                                                          --------->WRKY38(1)                                                                          --------->WRKY45                                                                          ----------->HVH21                                                                          --------->WRKY12--------->KAN4(2)                                                                         <---------MYB52(1)                                                                         --------->DOF5.7(2)                                                                        <-------GAMYB    --------->KAN4(1)                                                                       <---------ANAC46  <----------TaMYB80                                                                      <-----------------------TaNAC69(2)                                                                 <---------ATHB12        --------->HSFB2a(1)       --------->GLK1(2)                                     ------>ZmHOX2a(2)          <---------KAN4(2)       <-----------ARR10                                    <------ZmHOX2a(2)           ---------->TaMYB80      <---------GLK1(2)                                    <---------ARR14(2)      ---------->DOF2 =========================HOX2a_HOX2a                      --------->ARR14(2)  ----------->GT1<------ ------>DOF2       <------ZmHOX2a(1) <---------MYB52(1)--------->GLK1(2)<---------At4g35610   <------   aaagcagagaatctaaacagaggaagagactcgattgctgttttgtctaaaccagagaatcgatccgatgatgccgttgaccggttaaagaatattcctt  14257500            <---------ANAC58            ------>ZmHOX2a(2)       <------NtERF2      <---------DEAR4(2)         <---------ARR14(2)      ------>NtERF2              --------->ARR14(2)      --------->LBD16           <------NtERF2      <---------ATERF1(1)      --------->LBD16     --------->ATERF1(2)      --------->ANAC46                                   --------->ANAC58     <---------ATERF1(2)     <---------LBD16                      <---------ANAC58       <---------ANAC58     --------->DEAR3(1)      <------NtERF2                 <---------ALFIN1      --------->ANAC58     <---------DEAR3(1)    --------->ETT(2)               <------NtERF2        <------ZmHOX2a(1)    <---------LBD16        <---------DEAR3(1)        --------->ALFIN1       <------ZmHOX2a(1)    --------->ATERF1(1)    <---------ETT(2)        <-----------RAV1(1)    --------->ALFIN1    --------->DEAR3(2)   <-----------HVH21     ====================================HOX2a_HOX2a   --------->ZAT2       <-----------RAV1(1)  --------->GLK1(1)    <---------ANAC46       <---------ANAC58 ---ANAC58  <---------ANAC58------>NtERF2------>ZmHOX2a(2)<---------At4g35610 <----------ID1        - ---ANAC58 <------ZmHOX2a(2)<---------RAP2.3(1)<------ZmHOX2a(2)  <---------ANAC58 ---------->DOF2 <-   gtctgagccggcgatcgtgccttcttctgtcgccggaacctgatcggagatcgatgtggcagcacttagcgtagacgaggaggacgaaagtgagtgcgaa  14257600                    <---------bZIP60(1)                    --------->bZIP60(1)                    <---------O2                 ----------->TGA1                 ----------->HVH21               <---------At4g35610               --------->At4g35610                             <------------------SPL14               --------->LBD16                                --------->ARR14(2)          <---------GLK1(1)                              <---------At5g28300          --------->GLK1(1)                             <---------WRKY38(1)             <---------At4g35610     <---------ANAC58   ------>NtERF2             <---------O2<---------ARR14(2)        <------NtERF2     <---------ANAC46  <---------DEAR3(1)      ----------->HVH21   --------->MYB52(1)   --------->At4g35610     <---------ANAC58 --------->RAP2.6(3)      <----------ID1<---------MYB52(1) --------->ALFIN1    - -------->ATHB12<-----------HVH21  --------->At4g35610 ----------->HVH21     <------ZmHOX2a(1) <----- --------YAB1<---------LBD16       <---------At4g35610<-----------HVH21   <------ZmHOX2a(1)    ------   catgatggcgagaactccggtgacgacggctaaactcggctcaaaatttgcgacgaggtcaccgtttctgaacggaggaggagtctgggcagaggcataa  14257700                                            <---------SPL7                                           <---------ANAC58                                           <---------HSFB2a(1)                            --------->CCA1(2)                           <---------ARR11(3)          <------ZmHOX2a(1)--------->ARR14(2)                          <---------YAB1              --     <------ZmHOX2a(1)     <---------ARR14(2)            <----------DOF2    <---------TOE1(2)      <-   <---------ANAC46        --------->ARR11(3)   <---------HSFB2a(2)    --------->GLK1(2)     <------- -------->ALFIN1         ----------->ARR10 <---------ANAC58     <---------ANAC58            --------- ----ARR14(2)       ---------->DOF2        --------->HSFB2a(1)  <---------ANAC58           <---------AHL20(2) --->MYB52(1) ---------->DOF2     <-------TEIL  --------->HSFB2a(2) <---------ARR11(3)     <---------YAB1   ctgtggaggagaggaagaaagaaaaagaagatttgatacatcggagcgttcgagagaaactttgtttcttgatattcttgggtttgaaatagttttattg  14257800                                                                            ----------->HVH21                                                                          --------->ANAC46                                                                          <---------ANAC55(2)                                                                          <---------ANAC58                                                                          --------->ANAC55(2)                                                                         <-------TEIL                                                                       <---------ARR14(2)                                                                       --------->ARR14(2)                                                                   --------->TGA2(2)                                                                  <-----------TGA1                                                                  <-----------HVH21                                                                 --------->ANAC55(2)                                                                 <---------bZIP60(1)                                                                 --------->bZIP60(1)                                                                 <---------ANAC55(2)                         ----------->GT1                         --------->TGA2(1)                  < ------->At4g35610      --------->DAG2                           --------->ANAC46                   < --------At4g35610     ---------->DOF2<---------ANAC46           <---------TGA2(1)                 <- -----CBF      <---------YAB1      <-----------GT1              <-----------STF1 ------------>CBF  <- >ATHB12    --------->GLK1(2) <---------RVE1(1)           ------------>CBF<---------ANAC58     <-----   gagatgaaaatgagattatgttagagaaagtgatatttttcggtgtatgctataaactaatacaattacgtcatatacgtgacaacaatttgtatgctat  14257900                                                          <-----------GT1          --------->DEAR3(1)                                                         <---------AHL20(2)<---------MYB52(1)      <<<<<<<<<GATA-1                                   --------->AHL20(2)<-------GAMYB     <-----------GT1                               ------------>CBF      <---------MYB46(3) ---------DAG2                                --------->AHL20(2)         ----------->GT1 ----------DOF2                               <---------AHL20(2)       <---------At4g35610 --------ANAC58                           --------->AHL20(2)        --------->ALFIN1------>NtERF2  -- --------ANAC58                           <---------AHL20(2)       <---------MYB52(1)             <-- -------CBF          ---------->ID1      --------->AHL20(2)   <----------DOF2      ----------->HVH21   tgctttttatctatgctctatttgtcttctactattctctccatttaattaaatacaattttatctttcggtgggctgttattctccgacctcatttttg  14258000                                              ----------->GT1                                             --------->DAG2    <---------ALFIN1                                            ---------->DOF2 ----------->HVH21                                        <---------AHL20(2) <-----------HVH21                  ----------->TBP <-----------GT1          <-----------TGA1                 --------->AHL20(1)    --------->AHL20(2) <---------ANAC58                 <---------AHL20(1) --------->YAB1        <---------ANAC58        <------ZmHOX2a(1)        <-----------GT1          --------->bZIP60(1)                       - ------->YAB1    <---------ARR11(3)<---------YAB1  --------->REM1(1)         <---------RVE1(1)      < -------YAB1------------>CBF     --------->YAB1  <-----------GT1          <---------ZAT6          <--   atgatacttaggactacaatatatatggaacttatttatcattttataaagttacaacttgcgtcacacatttggagtgatatttttgtttagtttttgg  14258100          <---------AHL20(2)                                <---------AHL20(2)          --------->AHL20(2)                              <---------AHL20(2)         --------->AHL20(2)            <----------DOF2   <---------AHL20(1)                 <--------  <---------ZAT18                <---------CCA1(2)       <---------ARR11(3)         <---------YAB1 -------->At4g35610              ------>MYB83           <---------CCA1(2)     --------->MYB59       < ---------At4g35610              ------>MYB46(1)   --------->ARR14(2)         <---------TOE2(3)     - -------DEAR3(1)            <-----------GT1     --------->MYB59               <---------TOE1(3)    <-   tctgcgaactattaaaaaaaactacatatataaccaaatctcttttcaattcggttccatatattttttgtcatatggtttaggttatgctatttaacaa  14258200  Previous    Next  AGI:  At4g28890.1    Description:  protein binding / ubiquitin-protein ligase/ zinc ion binding. Identical to RING-H2 finger protein ATL4J precursor (ATL4J) [Arabidopsis Thaliana] (GB:Q5XF85;GB:Q9SV57); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G20030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65475.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 14256339    to: 14257741    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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