Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                   --------->ALFIN1                <x                                                                  --------->ARR14(2)            <xxxx                                                 --------->bZIP60(1)                            xxxxx            ------>MYB83                         --------->O2     <---------ARR14(2)            <----            ------>MYB46(1)                      <---------O2--------->MYB52(1)           <xxxxxxxxxx          <---------MYB59                     xxxxxxxxxxxxxxxx>smallRNA(i)               --------->YAB1    <------ZmHOX2a(1)       ---------->DOF2  <xxxxxxxxxxxxxxxxsmallRNA(i)               <xxxxxxxxxxxx   --------->ZAT18      <---------ZAT6   --------->YAB1   --------->TOE2(3)         <--------P <xxxxx ---->DOF2<---------MYB111(1)      >>>>>>>>>TBF1 <---------bZIP60(1)              ----------->GT1  <-   agaagaggactaccaaatcgatttgagagttaaagaagaagaatgaaaacgacgtcgttttcttaacgggtctgggtattagtcgggttaatcacaatcg  14250800                               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <-------GAMYB                     <xxxxxxxxxxxxxxxxsmallRNA(s)                    ----------->GT1               <---------GLK1(1)               --------->GLK1(1)              <---------ARR14(2)            --------->LBD16   ----------->GT1            xxxxxxxxxxxxxxxx>smallRNA(i)          <---------LBD16    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ---------->DOF2       <xxxxxxxxxxxxxxxxsmallRNA(s)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxx>smallRNA(i)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ZAT14xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxx>smallRNA(i)--------->LBD16  xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->SPL7xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ZAT14    <---------MYB46(3) xxxxxxxxxxxxxxxx>smallRNA(s)--------->LBD16 --------->ZAT14xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-------TEIL --------->ARR14(2)                                              ---------->DOF2 xxxxxxxxxxxxxxxxsmallRNA(i)<---------LBD16  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------YAB1               <- xxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->YAB1            ------- -----LBD16 xxxxxxxxxxxxxxxx>smallRNA(s)  ----------->GT1           <---------ICU4       <xxxxxxxxxxx xxxxxxsmallRNA(s) <---------TOE2(3)  --------->ATHB12             --------->ICU4        ----------->GT1 xxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------ATHB12 xxxxxxxxxxxxxxxxx xxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(2)  xxxxxxxxxxxxxxxxx --------SPL7 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        ------->TEIL xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   cggtacagtaaacgcggatttgtggttaatcccggttaaatgaatggttcaattgaaaatgtatgtttaatcatgaattcgaaagtagatgatgtaattt  14250900                                            --------->LBD16                                           <---------LBD16                                          <---------LBD16                                        --------->ARR14(2)                                        <---------ARR14(2)                                        --------->GLK1(2)                                --------->ZAT18                                                     -                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <                        xxxxxxxxxxxxxxxx>smallRNA(le3)                                             --                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     --------                 <---------MYB46(3)   ---------->DOF2                                        --------                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                ------>MYB83                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                          ------>MYB46(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           --------->DEAR3(1)      <---------YAB1   <xxxxxxxxxxxxxxxxsmallRNA(i)                                       --------->MYB46(3) <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              xxxxxxxxxxxxxxxxx --------TOE2(3)<---------AtMYB61xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <xxxxxxxxxxxxxxxxsmallRNA(s) -->ICU4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----------->GT1             <---------YAB1--------->At4g35610 xxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->GLK1(2)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------   tgaggaatatgaaaattgatggtggaaatttaagggcccaaaaatccgggagtgaaaactaagaatcgaaatagtttatgactcgaaaatcagccaaccc  14251000               --------->YAB1            --------->TOE1(3)            --------->TOE2(3)                --------->YAB1           <---------HSFB2a(1)              --------->ICU4               <---------bZIP60(1)           <---------HSFC1(2)               <---------ATHB12          ----------->HVH21      --------------->AtSPL8              <---------GLK1(1)         <---------ANAC58  --------->ANAC58 -------->AHL20(2)                        --------->GLK1(1)        <------NtERF2      ----------->GT1 ---------AHL20(1)                    --------->ANAC58            ------>NtERF2       --------->ANAC55(2) ---------AHL20(2)<---------ICU4      --------->ANAC58      --------->DEAR3(1)        <---------ANAC55(2) ------->AHL20(2)<---------YAB1     --------->MYB52(1)    <---------At5g28300         --------->ANAC46 ->ANAC58  --------->HSFC1(2)  ----------------->AGL2    <---------ALFIN1--------->bZIP60(1) >P  <-----------GT1           ----------------->AGL3   --------->MYB46(3)            --------->ANAC58 >smallRNA(se3)--------->REM1(1)  ---------->DOF2   <---------ATHB12<---------ANAC58  --------->ANAC55(1) ->ANAC58 ------->TEIL         ======================================================================   attaaattttcgaaccttcatcattttgcagaccccaaaaacggaaatcatcaaatcatccaccgtgccagcgtgacattacaaaatcacgtaaataccc  14251100                                                         --------->ZAT18                                                       <---------------AtSPL8                                                      <---------ANAC55(1)                                 --------->ANAC58     <---------ANAC58                                 --------->ANAC58     <---------ANAC58                                 <-----------------AGL1--------------->AtSPL8                                <---------ARR14(2)    <------MYB83                                --------->ARR14(2)    <------MYB46(1)                                --------->PCF5        <---------ANAC46                               ------>NtERF2         --------->MYB111(2)                        <------------CBF             --------->MYB46(2)                       --------->ATHB12     <---------ZAT14                    ---------->DOF2     <-----------RAV1(1)             ----------->GT1   --------->ATERF1(1)   --------->MYB111(1)            --------->DAG2     <---------TCP16(2)    --------->MYB59            --------->ZAT6            <---------TOE2(3) <---------SPL7--------->ZAT14       <---------AHL20(2)            <---------TOE1(3)<---------ANAC58      <---------MYB52(1)          <------ZmHOX2a(2)   --      <---------------AGL15  <---------ANAC58    <---------MYB46(3)          <------ZmHOX2a(1)     --      --------------->AGL15 <---------LBD16 --------->ZAT18      --------->AHL20(2)     --------->ANAC46 =====================MADS_MADS<------NtERF2<---------ZAT18      <---------AHL20(2)    <---------LBD16   tcgtgtttgtttataaggtaaaaaaagattggcggacccaaaatggtgcagtagttaggtgtacaaatttttttttgaaggatcactactacggctcaaa  14251200                    *TSS  --------->bZIP60(1)  --------->AHL20(2)            <-----------HVH21   --------->WRKY18(1)                                           -------           --------->bZIP60(2)--------->WOX13(1)  <---------AHL20(1)                          -------           --------->ANAC46<-----------HVH21   <---------AHL20(2)                             -------        <-------TEIL--------->AtMYB61       --------->YAB1                                  -------->P      <---------TCP16(1)  <---------bZIP60(1)  --------->YAB1                              ------->GAMYB ----------->RAV1(2)<---------ALFIN1      --------->AHL20(1)                              --------->MYB46(3) ------->ANAC58    <---------MYB55(2)     --------->AHL20(2)                              <---------MYB111(2) ------->ANAC58    --------->MYB46(3)    --------->YAB1            ------>ZmHOX2a(1)      <---------MYB55(2)   caagcctgggtccatgtcactaccaccgatgtcagtcaaacaaaaataataatatatgtttttaagttcctctaatttcaatcttctaaacaacaaccct  14251300                                                                                  --------->ZAT2    <                                          <---------WOX13(1)                      <---------ZAT2   <-                                        --------->ATHB12                <------NtERF2           <----                                       <---------YAB1      --------->ANAC58--------->ANAC58    <-----                                    <---------ARR14(2)     --------->ANAC58--------->ANAC58    ------                                    --------->ARR14(2)--------->AtLEC2 ------>NtERF2           ------                                <-------TEIL   --------->ZAT2         <---------DEAR3(1)     --------    <---------CCA1(2)          --------->GLK1(2)     --------------------->WRI1  --------->ANAC58----   ------>ZmHOX2a(1)           --------->ARR14(1) ------>NtERF2       <---------ATERF1(2)--------->ANAC58   ==============================HOX2a_HOX2a   --------->At4g35610    --------->ATERF1(2)--------->ANAC58  --------->TOE2(3)           --------->ARR11(1) >>>>>>>>>AtERF-3    <---------LBD16  <---------SPL7<  --------->TOE1(3)           <---------GLK1(2)<---------ZAT2   --------->ATHB12 --------->ANAC58<--- >GAMYB--------->ZAT6     ------>ZmHOX2a(2)    <---------At4g35610   --------->At4g35610--------->SPL7 -->TOE1(3)   <---------ANAC58--------->ARR14(2) >>>>>>>>>AtERF-4    <---------------------WRI1<----- -->TOE2(3)   <---------ANAC58<---------ARR14(2)--------->ATERF1(1)<---------DEAR3(1) ----------->HVH21   aaatccttatctctatccttgcgcttgatccagattcggttctgattggagctgccatggaacgcatcatcggcggcaagtacaagctcggacggaagat  14251400         <---------SPL7        --------->MYB52(2)        <---------ANAC58        <---------ANAC58        <---------MYB46(3)       <-------TEIL    <---------DEAR3(2)    --------->MYB55(2)    <---------MYB46(3)   --------->ALFIN1   <---------AtMYB61   <---------DEAR3(1)  <------NtERF2  <-------GAMYB <---------MYB46(3) ---------DREB2C(2) --------ABI4(1) --ZmHOX2a(2) ----ARR11(3) --->ARR14(2)                                            <----------DOF2         <---------AHL20(2) --->ARR11(3)                    <---------ANAC46        <---------MYB52(1) <----------DOF2 --->ARR10                 <---------TOE1(2)         ---------->ID1         <---------DAG2 -->ZmHOX2a(2)     <---------GLK1(2)             <---------ANAC58          <---------ANAC58 ---------DEAR3(1) <---------ARR11(3)            <---------ANAC58   --------->LBD16 ------DEAR3(1)    --------->ARR11(3)         <------------------------ANAC81   <---------AHL20(2) ----ARR14(2)     <---------RVE1(1)        ------>ZmHOX2a(1)  <<<<<<<<<MYB2<---------ANAC58   cggcggtggttcgttcggagagatttttctaggttttgtgttctcctctgttcttgtccctttggttttccgagtttgcttttttatttgaaattgacgc  14251500                                 <-------PIF5                                 ------->PIF5                                <---------TGA1a                                <---------O2                                --------->ANAC58                                --------->ANAC58                                --------->O2                         --------->ARR14(2)                        --------->ZAT2                         --------->ARR11(3)                        --------->At4g35610           <---------ZAT2                        <---------ZAT2   --------->TOE2(2)     <---------ARR11(3)                        <---------At4g35610           <---------At4g35610                       <---------TOE1(2) --------->TOE1(2)   <---------YAB1 --------->ZAT2             ---------->ID1 --------->ANAC58      ------>ZmHOX2a(2)         <---------ZAT2            <-------GAMYB<---------ARR14(2)     --------->ARR11(3)          <---------At4g35610            ==============================MYC_MYB<------ZmHOX2a(2)          --------->At4g35610           <---------MYB46(3)   --------->TGA1a <---------ARR11(3)  --------->SPL7           --------->MYB52(2)  ------->TEIL  <---------HSFB2a(2) ------>ZmHOX2a(2)     <---------ANAC58         <---------MYB52(1) --------->ANAC58 --------->HSFB2a(2)<------ZmHOX2a(2)      <---------ANAC58   tcttctcttctgtttgttgttttcgcagctacgcacgtcgataccttcgagatcgtagctgttaagatcgtaagtcccagctcaatttgccttgagacga  14251600                                ------>ZmHOX2a(2)                               <---------GLK1(1)                               <---------At4g35610                              --------->ARR11(3)                              <---------ARR14(2)                    --------->CCA1(2)                              <----------DOF2                   <---------ARR14(2)                             <---------ANAC58           <---------ARR14(2) <---------AGP1           <---------YAB1  --------->ZAT6             <--           --------->ARR14(2) --------->ARR14(2)<---------WOX13(1)<---------ANAC58     ----------->GT1   attgaatccatccaatctggagatttgatttggatctgctatgtctcttaattgattttgtttgaattgctttactctaaaattgagcaaggttttaaac  14251700  Previous    Next  AGI:  At4g28870.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49680.1) Range:  from: 14250427    to: 14250726    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g28880.1    Description:  CKL3 (Casein Kinase I-like 3); casein kinase I/ kinase. similar to CKL4 (Casein Kinase I-like 4) [Arabidopsis thaliana] (TAIR:AT4G28860.2); similar to CKL4 (Casein Kinase I-like 4), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT4G28860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65481.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 14251220    to: 14254438    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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