Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                         <---------AHL20(2)                                                                             <---------ANAC58    ----                                                                             <---------ANAC46    ----                                                                  ----------->GT1  <---------ANAC46                               <---------AHL20(2)                 <---------ANAC55(2) --------->ARR14(2)                  --------->YAB1             <-------TEIL         --------->ANAC58 <---------ANAC58        --------->ARR14(2)    <---------AHL20(2)                  --------->ANAC58 <---------ANAC58        <---------ARR14(2)    --------->AHL20(1)         --------->MYB46(3)  <---------ANAC58<-------    <---------At4g35610       --------->AHL20(2)       ------->TEIL     <----------DOF2  --------->AHL20(2) ------GT1 <-----------GT1    <---------AHL20(1)   ------->TEIL   --------->ANAC55(2) <---------ARR14(2)   ccattctgcagatttaccaataagaactcaaataaaatttgctcatatacatgaatgcatccatcgataagtaactttggcttatgcgtatatatataca  14203600                                                                           <------MYB83                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                           <------MYB46(1)                                                                          <---------MYB46(3)                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                  <---------ANAC46                                                                 <------NtERF2                      <                                 --------->TOE2(3)             <---------RAP2.6(2)                  -                                 --------->TOE1(3)           --------->MYB55(2)                   ---                             ----------->HVH21               <---------MYB46(3)                  ----                             --------->WRKY12                --------->ABI4(2)                   ----                           <---------ZAT2                   <---------DEAR3(1)           <---------ALFIN1                           <---------At4g35610              <---------AtMYB61        --------->At4g35610                           --------->ZAT2                   --------->ALFIN1   <------NtERF2     <--- --------->MYB52(1)        --------->At4g35610          <---------ATHB12  <---------AtMYB61      <--- ----->ANAC58             --------->MYB52(2)           --------->MYB52(1) --------->MYB46(2)  ------- ----->ANAC58        <---------TOE1(3)                 ------>MYB46(1)    --------->MYB111(2)-------- ----->ANAC46        --------->MYB59                   ------>MYB83       --------->MYB55(2)<-------- ----GT1             <---------TOE2(3)            <------ZmHOX2a(1)       --------->MYB111(1)--------   agctaatggaatttaagacggtttaggttagctgaccttagaccctctcttaggaccaatcggtggtggcttgggtttggtggcagtagctccatccgga  14203700                 --------->GLK1(2)                 <---------ARR11(3)          <---------LBD16        ----------->HVH21      <---------At4g35610      --------->ZAT2                             ------>ZmHOX2a(2)      <---------ZAT2                            <------ZmHOX2a(2)      --------->At4g35610                       <---------GLK1(1)      <------NtERF2                             <---------HSFB2a(1)      --------->ATERF1(1)                      --------->ARR14(3)      <---------ATERF1(1)                      <---------ARR11(3)     <---------ATERF1(1)                       --------->ARR11(3)    <-----------RAV1(2)                        <-----------ARR10   <------NtERF2 --------->ARR11(3)            <---------ARR14(3) ---------At4g35610                            --------->ARR14(2) -------->At4g35610                            <---------ARR14(2)                    <-----------ARR10 ------>ATERF1(1)<---------ARR14(2)           <------ZmHOX2a(1)                   <---------ANAC58 ----->ZAT2  <------NtERF2                <---------ZAT2                        --------->LBD16 ----->At4g35610 --------->ARR14(2)       --------->ZAT2     ----------->HVH21 --------->DEAR3(1) ------ZAT2<---------ANAC46             <------NtERF2    --------->ZAT18      --------->DEAR3(2) ------At4g35610<---------GLK1(2)      --------->LBD16   ------>NtERF2      <---------ARR14(2) -->LBD16--------->MYB52(1)          <---------LBD16  <---------At4g35610   --------->ARR14(2)   ---- ->HSFB2a(2)--------->LBD16      <------ZmHOX2a(1)    --------->At4g35610   <<<<<<<ZML2          ---- -LBD16--------->ATERF1(1)       =======================HOX2a_HOX2a       ----------->ARR10--------->At4g35610 ->ANAC46------>NtERF2           ======================HOX2a_HOX2a    ------->TEIL<---------ANAC58 --   gcagcggcagctgccggagaatcttttgaagaagaggaagccggagcaggatcttcggctgccctgactacgagcctagaaccggcgtttctcatcggca  14203800                                        <---------O2                                 <---------ETT(2)                                 --------->ETT(2)                                 ----------->HVH21                                 --------->DEAR3(1)                               <---------ATERF1(1)                               --------->LBD16                               <---------RAP2.3(1)                               ------>NtERF2                              <---------DEAR3(1)                              --------->ATERF1(2)                              <---------ATERF1(2)                              --------->DEAR3(1)                              --------->RAP2.3(3)                              --------->RAP2.3(2)                             --------->RAP2.3(1)                             --------->ORA47(2)                  --------->SPL7<------NtERF2               --------->HSFB2a(2)      --------->O2          --------->GLK1(1)  --------->ATERF1(1)          <---------At4g35610<---------LBD16          <---------GLK1(1)  <------NtERF2----------->HVH21                     <-----------TGA1          --------->ZAT2     --------->ERF1                      --------->MYB52(1)          --------->At4g35610--------->DEAR4(2)      <---------DEAR3(2)         <-----------HVH21          <---------ZAT2    <---------RAP2.3(1)      ----------->GT1--------->LBD16      --------->ANAC58      <---------ATERF1(1)     <---------ATERF1(2)        --------->bZIP60(1)      --------->ANAC58     --------->DEAR3(1)       <---------MYB46(3)         <---------bZIP60(1)      --------->ANAC46    <---------ABI4(2)<<<<<<<<<<<<<<<<<LFY<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------LBD16   ---------->DOF2  --------->ZAT2<---------MYB52(1)       <---------ETT(2) ----->ANAC58  <---------HSFB2a(2)------>NtERF2     --------->ATERF1(2)        --------->ETT(2) ----->ANAC58----------->RAV1(2)--------->RAP2.3(1)<---------ORA47(1)          <---------TGA2(1) -------->DOF2 ------>ZmHOX2a(1)--------->ATERF1(1)<---------ANAC46<---------ANAC46   agaaagacacggagctcctggacgacgaagcgccggcgaccgaggtgacattggccggtagaacaaataccgtagatgctgtcgtcatcgccatctctgg  14203900                                                <---------YAB1                                            <---------ARR14(2)                                          <---------MYB46(3)                                         --------->ALFIN1       ----------->GT1                      <---------YAB1  --------->DAG2         <------MYB83                <---------YAB1     ---------->DOF2           <------MYB46(1)            <----------DOF2      --------->ANAC46        <-----------RAV1(1)   --------->DAG2   <----        <----------DOF2          --------->ANAC58  <---------WOX13(1)         --------->SPL7  <------ZmHOX2a(1)  <----------DOF2  <---------YAB1--------->ANAC58--------->ATHB12  *TSS   <-------TEIL  ---------->DOF2   ttttctttttctttctttcttattgttattgcgacacgaaagagtggttcttgattgttttgttggtagtaatatgttcgtaaggctaagaaaagaggaa  14204000                                                     <-------PIF5                                                     <-------MYC4                                                     ------->MYC4                                                     ------->PIF5                                                     ------->MYC2                                                     ------->MYC3                                                     <-------MYC3                                                     <-------MYC2                           <--------                                                    <--------ABF1                           ---------                                                    --------->O2                            ---------                                                    <---------ANAC46                        <--------                                                    <---------ANAC55(2)                     ---------                                                    <---------O2                            <--------                                                    <---------TGA1a                         ---------                                                <-----------HVH21                           <--------                                              ------>ZmHOX2a(2)                             <--------                                             --------->CCA1(2)                              <--------                                             <---------At4g35610                            <--------                                             --------->At4g35610                            <--------                                             <------ZmHOX2a(2)                              <--------                                            <---------ARR14(2)                 <------ZmHOX2a(1)                                            --------->ARR11(3)                 --------->YAB1                                            --------->AGP1                   <---------TOE2(3)                                            <---------ARR11(3)    <-----------ARR10         =========                                            --------->ARR14(2)    <---------ARR11(3)       ----------                                            --------->ARR14(3)   <---------CCA1(2)        <---------TGA2(2)                                           <---------GLK1(1)   <---------ANAC55(2)       ----------->TGA1      --------->ARR11(3)                  ----------->ARR10    --------->ANAC55(2)       ----------->HVH21      <---------ARR11(3)------->TEIL<---------ALFIN1--------->TGA1a          <---------TOE1(3) --------CBF  ----------->GT1    --------->ANAC46 <---------ALFIN1--------->ARR11(3)  --------->ALFIN1   ttgtttgagatgttttgggttaaacgaatcgtttccctccacttgagatctgccacgtgtacattacatatctattcttaaggataatgtggtgacgtgg  14204100  <---------TOE2(3)  --------->MYB59  <---------TOE1(3) -O2 >O2 >TGA1a -TGA1a >bZIP60(1) -ANAC55(1) >ANAC55(2) -bZIP60(2) -bZIP60(1) -ANAC58                  <----------DOF2                                                   <-------- -ANAC55(2)          --------->GLK1(1)                       --------->AHL20(2)             <-------- -ANAC46             <---------GLK1(1)                  <---------AHL20(2)         <---------AHL20(2) -ANAC58            --------->ARR14(2)           --------->ATHB12       ----------->GT1     <-------- ====================================bZIP_DOF   <-------TEIL <---------AHL20(1)<---------AHL20(2) ->STF1             <---------GLK1(2)     ---------->DOF2    <---------AHL20(2)--------->AHL20(2)   tttttaggttactcttatttcagatttcctttgtgaatgaaaaataaagattcattgttttattttattttttgtggataaatatttaagtgtttcttga  14204200                                            <---------AHL20(2)                                           --------->AHL20(2)                                           --------->AHL20(1)             --------->TOE1(3)                                 --------->AHL20(2)               <---------AHL20(2)                                 <---------AHL20(2)               --------->AHL20(2)                                --------->AHL20(2)    --------->MYB46(3)  --------->TOE2(3)                             <---------AHL20(2)     <-----------GT1       --------->YAB1          --- ----------->GT1            --------->AHL20(2)   <---------ANAC55(2)  --------->AHL20(2)          <-- -ANAC46                    <---------AHL20(2)   --------->ANAC55(2)  <---------AHL20(2)         <--- -ANAC58               <----------DOF2     <---------AHL20(2)     <---------YAB1        --------->AtMYB61 -ANAC58            <-----------GT1        <---------AHL20(1)    --------->AHL20(2)   >>>>>>>>>MYB2 -   aacatgtaaaaaatgttttgtttttctttataaatttaaaaacaatttaatacataaccactctcgttttaattaatcttaaaatgaaaaccaaaacata  14204300                                                <---------AHL20(2)                                               --------->AHL20(2)                                           --------->AHL20(2)                                           <---------AHL20(2)                                          --------->AHL20(2)                                          <---------AHL20(2)                                    <---------ANAC58                                    --------->ANAC55(2)                                    <---------ANAC55(2)                                    <---------ANAC58                      ------>ZmHOX2a(2)                                 --------->TOE2(2)                       <------ZmHOX2a(2)                                 <---------SPL7--------->YAB1           --------->ARR11(3)                                <---------ANAC58--------->AHL20(1)      --------->AGP1                                <---------ANAC58<---------AHL20(1)      <---------ARR11(3)    --------->At4g35610        --------------->AtSPL3                   <---------AGP1     <---------REM1(1) ------>ARR11(3)               <---------------AtSPL3         <-------GAMYB   --------->YAB1        - -------ARR11(3)             <---------CCA1(2) <---------AHL20(2)   ---------->DOF2    --------->ARR11(3) ------CCA1(2)       --------->YAB1--------->SPL7             --------->At4g35610   --------->AHL20(2) -------->TOE2(3)   <---------YAB1 <---------TOE1(2)          <---------At4g35610--------->YAB1    <-   tatcttagatgaagtttgatttttcatagtcgtatcgtacgtgattaaattatattcgttttgcagttgccaaagatctataacaataacatattgtagc  14204400                                                    --------->DOF5.7(2)                                                    <---------MYB52(1)                                              <---------AHL20(2)                                              --------->AHL20(2)                                             --------->ICU4                 <---------DAG2                                    <---------YAB1 --------->TOE2(3)        <----------DOF2             <---------YAB1      <---------------AGL15                 <---------MYB59 -------->YAB1               --------->MYB46(3)   ----------->GT1      --------->TOE2(3) --------ATHB12 --------->ICU4   --------------->AGL15              <-----------GT1    <-----------GT1   aatcgtgttcattttgtaattgttgacgacaacaacttattttagtaattaatcgttaattcaaaatttgaaaccttacttttagcgattaacaatttaa  14204500  Previous    Next  AGI:  At4g28750.1    Description:  PSAE-1 (PSA E1 KNOCKOUT); catalytic. Identical to Photosystem I reaction center subunit IV A, chloroplast precursor (PSAE1) [Arabidopsis Thaliana] (GB:Q9S831); similar to PSAE-2 (photosystem I subunit E-2), catalytic [Arabidopsis thaliana] (TAIR:AT2G20260.1); similar to AT4G28750 [Arabidopsis lyrata subsp. petraea] (GB:AAT72503.1); contains InterPro domain Electron transport accessory protein; (InterPro:IPR008990); contains InterPro domain Photosystem I reaction centre subunit IV/PsaE; (InterPro:IPR003375) Range:  from: 14202764    to: 14203967    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version