Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <------MYB46(1)                                      <-------                                        <------MYB83                                <---------AHL20(1)                  <---------MYB52(1)  <--------P                                    <---------AHL20(2)           <---------ANAC58        <---------TOE2(3)                                --------->AHL20(2)           <---------ANAC58      <---------ATHB12      <---------ATHB12            --------->AHL20(2)           <---------ANAC46 --------->ANAC58       <---------YAB1                --------->TOE2(3)<--      <---------GLK1(2)     --------->ANAC58   <---------KAN4(2)          ------->TEIL     <---------   tcggaccagaatggcttgcagtttgttaagaagcaatgaggttggagagaattttcaatgagcaaaacaaaatgtgtatgttacattaaattttttcact  14151000                                       <---------ANAC58                                       <---------ANAC58                                  ------>ZmHOX2a(2)                                       -----------                                  <---------ICU4                                          <------MYB83          --------->ARR11(3)    --------->ARR11(3)                                  --------->AHL20(2)    <---------WOX13(1)          <---------ARR11(3)                                  <---------AHL20(2) <---------YAB1          <---------TOE1(2)                                         <---------AHL20(2) ----GT1 --------->YAB1 =================HOX2a_HOX2a                               --------->AHL20(2) --------DOF2--------------->AtSPL8<----------DOF2                     <----------DOF2    <------MYB46(1) --GT1--------->YAB1    ------>ZmHOX2a(1)                  --------->YAB1      <---------YAB1     ---   cttttgatttataatcttgtactctcctagttttgatctttacttgagtttcaacttacaatggtaatctaggcttttgttctgattaaatttggtttaa  14151100                                   --------->ATHB51                                   <---------ICU4                                  <---------YAB1                                  --------->ICU4                              --------->ARR11(3)                                                    -                              <---------ARR11(3)                                                 <---                             --------->YAB1            <----------DOF2                       <-------                            <---------YAB1 <---------ICU4              --------->MYB52(1)    <-------                     ---------->DOF2      --------->ICU4             <---------MYB59         <------- >GT1        <---------ARR11(3)<---------YAB1<---------YAB1         --------->ANAC55(2)      <------- ------>TOE2(3)  <-----------GT1--------->YAB1  <------------CBF    <---------ANAC55(2)    <---------   tctaaacaaatccatgattttactaaaggtatgatcataatttcattatgaattgtgctattagtcaaatacttaactgtgtttgtgtttatattacgag  14151200                                                                                                 ----                                                                                                <----     ------------>CBF                                                                           ----- ----------->CBF                                    <---------ZAT14                             <---- ------ZAT6                                       --------->ANAC46                              <---- --ANAC58                                         --------->ANAC58                             ------ --YAB1              <---------ANAC46             --------->ANAC58                   ------>MYB83<--- --ANAC58 --------->AHL20(2)                    <---------ALFIN1                     ------>MYB46(1) --ANAC55(1)   --------->AtMYB61   --------->AHL20(2)       <------------CBF       <---------MYB59 <- --GT1   <---------ATHB12         <---------AHL20(2)--------->ZAT14     --------->YAB1  <----------DOF2   tgttcaatccaattaaaccaaaaccgtgtaagagatttaaaatagaaaacacactccactgaaattgaacagaatcaaaactaaaccgaactttgagcat  14151300 --------->LBD16 ----->ARR14(2)                                       <---------YAB1 -----CCA1(2)                 ---------->DOF2       --------->YAB1 ---->GLK1(1)       ----------->TBP  <---------MYB52(1)    --------->DAG2 -----GLK1(1)     <---------------AGL15            <---------YAB1 ------TaMYB80    --------------->AGL15         <---------AHL20(2) ---->TaMYB80    ----------------->AGL2      ----------->GT1        ---------->DOF2     <---------ICU4 ------ARR14(2)  ----------------->AGL3   --------->YAB1  --------->DAG2         ------>ZmHOX2a(1)  - --------LBD16   <-----------------AGL2 <---------TOE2(3)---------->DOF2 <------------CBF      <-----   atccggttttaagttgatgaccatatatagccaaaagtcgttaagaatagtttattatgaaaaggggcatcaaagcattgttcctctgcatcatggcatc  14151400                                  <---------TOE1(3)                                  <---------TOE2(3)                               --------->DOF5.7(2)                                        <---------AHL20(2)                               <---------MYB52(1)                                        <---------ARR11(3)                              <---------RAP2.6(3) <---------WRKY12        --------->DEAR3(2)                        <---------ANAC58         <---------MYB52(1)  --------->HSFB2a(2) --------->ARR11(3)                        <---------ANAC58        --------->LBD16 <---------ARR11(3)       <---------AHL20(1) <---------MYB52(1)<-------GAMYB <---------DOF5.7(2)            --------->GLK1(2)      <---------ARR14(2) --------->DOF5.7(2)<---------MYB52(1)          <-----------HVH21--------->RVE1(1)     --------->ARR14(2) -------->TOE2(3) <---------MYB46(3)--------->TOE2(3)           --------->ARR11(3) <---------LBD16 -- -NtERF2    <----------DOF2   <-------GAMYB--------->ZAT2  --------->AtLEC2        ------>ZmHOX2a(1)-   gacgttaatctcttctttggccgttgtcttgccgttaacgttactagctccgtcaatgtccatgaaaatctctcgaatcgacgtcctcggatatatttgt  14151500                                    <------ZmHOX2a(2)                                   --------->ARR11(3)                                   <---------ARR11(3)        --------->DEAR3(1)        --------->GLK1(1)       <------NtERF2              <---------GLK1(1)       --------->DEAR4(2)      --------->LBD16      <---------ATERF1(1)    <---------LBD16      ------>NtERF2         --------->MYB52(1)               <------ZmHOX2a(2)    <---------ABI4(2)       -------->P                      <-----------HVH21   ------->GAMYB         <---------ANAC58                ------>NtERF2        <---------ANAC58  --------->ANAC46       <---------ANAC58          --------->TOE2(3)   --------->CCA1(2) ------->MYB46(3)    <------ZmHOX2a(1)          <-----------GT1   ----------->GT1            <------- -------->MYB52(1)   ======================HOX2a_HOX2a  --------->ANAC46      <---------ANAC58   aacaacggcaccgtctccaacgaggaggcttaccggagatcatatcagattaacctcgacgcgatcagaggtgatatgaggcatgtcaagtttggaactc  14151600                                                                                                 <---                                                                                       <-------MYC4                                                                                       ------->MYC4                                                                                       ------->PIF5                                                                                       ------->MYC3                                                                                       ------->PIF4                                                                                       <-------PIF4                                                                                       <-------MYC3                                                                                       <-------MYC2                                                                                       <-------PIF5                                                                                       ------->MYC2                                                                                      <---------ANAC55(2)                                                                                      <---------TGA1a                       <---------------AtSPL3                                         <---------ANAC46                       <---------KAN4(2)                                              --------->ANAC55(2)                       <---------------AtSPL8                                         <---------bZIP60(2)                --------->LBD16                                                       <---------O2              <---------LBD16                                                         <---------ANAC58           ------>ZmHOX2a(2)                                                          <---------ANAC58         --------->ARR14(3)                                                           --------->O2---         --------->ARR11(3)                                                           --------->TGA1a         <---------ARR11(3)                                                          ------------>OsbHLH66         --------->ARR14(2)                                        ------->TEIL      <---------------         <---------ARR14(2)                                  ----------->HVH21    <-----------HVH21         <---------ARR14(3)                                  ===================================MYC_MYB        --------->GLK1(1)                                    ------->GAMYB       <------MYB46(1) <---        <---------GLK1(1)          ---------->ID1           --------->MYB46(3)   <------MYB83    ----       ----------->ARR10   ------->TEIL                    --------->At4g35610   <---------MYB46(3) ------->TEIL------>ZmHOX2a(1)   <-----------RAV1(1) ------>ZmHOX2a(2)       <-----------RAV1(1)----- --GLK1(1)<------ZmHOX2a(2)<-------TEIL             <------ZmHOX2a(2)       <---------TOE2(3)   <----   atgaacatggagatcctccggagagaatgtacgttttgtcgcagtgtgttagcgatctctcatccgacgaatgtagtttatgttggtcacgtgctaccga  14151700                                <------MYB83                              <--------P                             <-------GAMYB                            --------->MYB55(2)                            --------->MYB52(2)                            --------->MYB111(2)                            <---------MYB46(3)                           <---------AtMYB61                           --------->ALFIN1                          <---------MYB52(1)                       <------NtERF2                         <---------At4g35610                      ------>NtERF2                       ---------->DOF2                      --------->MYB52(1)                <---------MYB52(1)                     <---------ALFIN1                  --------->TOE2(3)                    ----------->HVH21                 <---------ANAC46     <---------GLK1(2)  ------>ZmHOX2a(1) --------->MYB46(3)           <---------MYB46(3)       <---------At4g35610 ---ZmHOX2a(2)     ------>NtERF2--------->MYB52(2)    <---------ANAC58 <---------At5g28300 --->ZmHOX2a(2)   ------>NtERF2 <------MYB46(1)<-------GAMYB --------->At4g35610 --------TaNAC69(2)<-----------HVH21          <---------MYB46(3)   <---------ICU4 ------GLK1(1)    --------->ANAC46           <---------DEAR3(1)   --------->ICU4       ------->TEIL < ----->GLK1(1)    --------->LBD16          ------------>AtMYB77----------->GT1         --------->GLK1(2) ---->ARR14(2)   --------->LBD16<---------MYB46(3)    <---------ANAC58<-----------GT1 --------->ARR14(2) -----ARR14(2)  <---------LBD16<---------AtMYB61<---------MYB52(1)<---------YAB1      <---------ARR14(2)   tctcctctctcaatgtttcccggccaccggtggttggtttcacctcgacggttgtttcgttagagctgataattacagcttctatcaagaacctgtttct  14151800                   <-------GAMYB                  ----------->GT1                  <---------MYB46(3)                                                             <---             <--------P                      ----------->GT1         <---------AHL20(1)          ----          <---------TOE2(3)        <---------GLK1(1)  --------->ATHB12--------->CCA1(2)          <---   <------ZmHOX2a(1)   <---------YAB1     <---------CCA1(2)    ----------->GT1                   ---- ---------ICU4<-------TEIL         --------->GLK1(1) <---------YAB1  --------->AHL20(1)  <------ZmHOX2a(2)   catcaggacaccaaggtagatggttatgttttgtcagaaatctcatatcgaaaatatgatgggactagtaatatataagtgctatagttggatcaattct  14151900  Previous    Next  AGI:  At4g28660.1    Description:  PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN). Identical to Photosystem II reaction center PSB28 protein, chloroplast precursor (PSB28) [Arabidopsis Thaliana] (GB:Q8W0Y8;GB:Q9M0G6); similar to unnamed protein product [Vitis vinifera] (GB:CAO40551.1); contains InterPro domain Photosystem II protein PsbW, class I; (InterPro:IPR005610) Range:  from: 14149922    to: 14151110    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g28670.1    Description:  protein kinase family protein. Identical to Putative cysteine-rich receptor-like protein kinase 43 precursor (CRK43) [Arabidopsis Thaliana] (GB:Q9M0G5); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G70520.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69245.1); contains InterPro domain Protein of unknown function DUF26 (InterPro:IPR002902); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 14151393    to: 14153941    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version