Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------ZAT2        --------->ZAT2   <-------TEIL --------ARR11(3)      <---------At5g28300 ----->ANAC58        <---------ARR14(2) ----->ANAC58        --------->ARR14(2)                                     --------->YAB1      <---- ----->ANAC46    <---------ZAT14                                 --------->ZAT14               ------ ->ANAC58        --------->ZAT14                                 <---------ZAT14              <------ ->ANAC46    --------->ARR14(2) --------->HSFB2a(2)         <---------AHL20(2)                ------- ->ANAC58    <---------ARR14(2) <---------HSFB2a(2)        <----------DOF2 <---------YAB1    --------   agaaattcgtagcaggctctgcagttactgcattctggaatctaacttctctcaagacccgttttattgcagtgtttatcatagtagtagtaatcagata  14059600        <---------ARR14(2)        --------->ARR14(2)       <---------GLK1(2)  ----------->RAV1(1) --------->ANAC46                                  --------->ANAC58 --------->ANAC58        --------->LBD16           --------->ANAC58                     <------ZmHOX2a(1) --------->ANAC58       <---------ANAC46    --------->ANAC58                         <------NtERF2 ---TEIL--------->GLK1(2)<---------LBD16    --------->ANAC58                ---------->DOF2 --->CCA1(2)         --------->GLK1(2)      --------->ANAC46     --------->ANAC46   --------->LBD16 ---ARR14(2)        <---------GLK1(2)<------ZmHOX2a(1)          <---------LBD16    --------->DEAR3(1) -->ARR14(2)    <---------MYB52(1)<------ZmHOX2a(1)----------->GT1     ----------->RAV1(1)     <----- ->At4g35610  <---------ZAT6<------ZmHOX2a(1)  ----------->RAV1(1)--------->LBD16 <---------LBD16   cagacgacagaatctacagttagattccgaggatgaggaggagaagaagcaacaagaaaaaactcacccggagcaacaaaaatcgccggaggataagtca  14059700               --------->At4g35610            --------->At4g35610            <---------At4g35610          <---------WRKY38(1)              <---------HSFB2a(2)          <---------WRKY12            --------->MYB52(2)   ---------->DOF2        <-----------HVH21       <------MYB83             --------->ANAC58     --------->LBD16            <------MYB46(1)          --------->ANAC58    --------->DEAR3(1)         <---------AtMYB61       <----------ID1                              <-  <---------At5g28300          --------->ALFIN1    ---------->DOF2                                 -- ----WRKY12 <---------ZAT2     <---------DEAR3(1) --------->AtMYB61<----------DOF2         <---------   acttcaccgcggtcagcagaagaagagcaagcgttggtgctagttgcagaaaccaaagcaccaaagaagctttattagtctagtcactagtgtcttttca  14059800                                                                                     --------->ANAC58                                                                               ------->MYC2                                                                               <-------MYC2                                                                               <-------MYC3                                                                               ------->MYC3                                                                              <---------TGA1a                                                                              --------->bZIP60(2)                                                                              <---------O2                                          ---------->DOF2                     --------->O2                                          ==============================================bZIP_DOF                                      <---------AHL20(2)                      --------->ANAC58                                      --------->AHL20(2)                      <---------ANAC55(2)                                   --------->YAB1                             --------->ANAC55(1)                                  <---------YAB1                              --------->TGA1a                             <---------ANAC55(2)                              --------->ANAC55(2)              --------->YAB1 --------->ANAC46                        <---------AHL20(2)              --------->AHL20(2)  --------->ICU4                  --------->YAB1----------->HVH21    ----------->RAV1(2)      --------->ANAC55(1)        --------->AHL20(2)    --------->ANAC46  <---------ALFIN1           --------->ANAC55(2)      <---------YAB1 --------->AHL20(2) --------->MYB46(3)          --------->ANAC58         --------->ICU4 <---------AHL20(1) --------ARR14(2)            --------->ANAC58      <---------ATHB12  --------->AHL20(1) ------->ARR14(2)    <-----------GT1 --------->AHL20(2) --------->YAB1        --------->ANAC58------- -DOF2     --------->YAB1   <---------TOE2(3)  --------->ZAT14   --------->AHL20(2)  --------->ANAC58   gtatccacctgtgtaataatatttcacatttacgtaataataaataaagagcagtcattaatatcaaataataaattgacacgtgacaagctcatgaaac  14059900           ----------->GT1                                          --------->TOE2(3)        --------->At4g35610                           <----------DOF2        <---------At4g35610              <---------ZAT14            --------->TOE1(3)         *TSS        ----------->GT1                  --------->ZAT18     ----------->TBP                 -------- >TEIL<-----------RAV1(2) --------->SPL7 <---------ZAT18   <----------DOF2      <---------CCA1(2)   tgtgagaagcaggtgataaaaactctcgtccgtcttgggagagagcacatcgtcgtcttttctttataaaccctaaattcccatttctcttctccaaaag  14060000                                                                                       <---------ANAC46                                                                          <---------At4g35610                                                                          --------->At4g35610                                                                         <-----------RAV1(1)---------                                <---------ARR14(2)                    <---------ARR14(2)    <--------                                --------->GLK1(2)                     --------->ARR14(2)    <--------                                --------->ARR14(2)              ------>NtERF2  <---------MYB46(3)                          --------->ANAC58                    <------NtERF2   <---------ANAC46              ------>MYB83--------->ANAC58----------->GT1     --------->ATERF1(1)   ----------->HVH21              ------>MYB46(1)  <---------GLK1(1)             ------>NtERF2--------->ZAT2   --------->ARR14(2) <-----------GT1       <---------SPL7     --------->YAB1     <---------ATERF1(1)<-------GAMYB      <- -->DOF2   --------->ANAC46 --------->ANAC46             <---------DEAR3(1)  <---------LBD16---------   ttttatcgattccaccaaattagggcgaacgcgaaatctgggtattgtaatttgaagcgatggcgacgactggaactgctgcggttgcgacgggaacttc  14060100                                                                      <-------GAMYB                                                                  <---------WRKY18(1)                                                                 --------->WRKY38(1)                                                                 --------->WRKY12                 <--                                                                 --------->WRKY45                 --- --------->At5g28300         --------->ALFIN1                   --------->DOF5.7(2)          <------- >HSFC1(2)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <-------MYC3                  <------- -HSFC1(2)                <---------AtMYB61       --------->MYB46(3) <---------ZAT6          <------- -HSFB2a(1)     <---------MYB52(1)         ----------->RAV1(2) ------->MYC3        <---------TOE2(3) --------DEAR3(1) <---------MYB46(3)   ---------->DOF2      <---------ALFIN1  --------->ATHB12  <---- >HSFB2a(1) --------->MYB52(1)      --------->At4g35610 <-----------HVH21---------->DOF2   --------->ARR11(3)   gacggtgaagagaaaaccggtgtttgtgaaggtggaacagctaaagcctggaacgactggtcacacgttgactgttaaagtcattgaggctaatatcgtg  14060200          --------->LBD16                                                                       <----        <---------LBD16                                                                         -----   <-----------HVH21                                                                           <-----  ------>ZmHOX2a(1)                                                                        <---------ANAC46 -------ARR14(2)                                                                ----------->TGA1----- ------>ARR14(2)     --------->SPL7                                             ----------->HVH21 --ANAC58--------->ANAC58                                          <---------ANAC58--------->ANAC58 = --ANAC46--------->ANAC46                                          <---------ANAC58<---------bZIP60(1) --ANAC58--------->ANAC58     <---------ZAT14                      <---------ANAC46--------->bZIP60(1) -----MYB46(3)<---------HSFB2a(1)           ------>ZmHOX2a(1)   <---------MYB52(1) --------->ANAC58 -   gttcctgttacccggaagactcgtccagcgagttctctgagtcgtccttctcagcctagtcgaatcgttgagtgtctcatcggtgacgaaactgggtgta  14060300           --------->ANAC58           --------->ANAC58   --------->ZAT14   <---------ZAT14    <---------TOE1(3)            <----------DOF2 -----ARR14(2)        <---------TOE2(3)            <---------DAG2 ---->ARR14(2)     <------ZmHOX2a(2)              <---------ANAC58 ----CCA1(2)  --------->MYB52(1)        <---------DAG2                                     <---------ZAT6 -->TEIL   --------->ANAC46             <----------DOF2    --------->CCA1(2)         <---------YAB1 =========================HOX2a_HOX2a<---------ALFIN1  <---------TOE2(3)          <---------AHL20(2) ----->ZmHOX2a(1)------->GAMYB    <-----------GT1 <---------ANAC58             <---------TOE1(2)   tcctcttcactgctcgtaacgatcaaggttattgtttctccacttttctcttgctttatggatatagaaatggtgtcttcgtagtttattagagtgataa  14060400          ---------->ID1                              --------->At5g28300        <-----------RAV1(1)           <-----------------AGL2                     <------MYB46(1)      ------>ZmHOX2a(1)        <---------ATHB12      ----------->GT1             ----------->GT1      <----------DOF2<---------MYB52(1)<---------------AGL15                     <------MYB83------->TEIL     --------->TOE2(3)   ---------->ID1--------------->AGL15                    --------->MYB59   <--   gtcttatcctttgttgttctctcgtttgtcttaatcaatttctattttgagcaaatggtaaatgtgtttctattagtactatttggtaaatgatgtatca  14060500  Previous    Next  AGI:  At4g28430.1    Description:  reticulon family protein. similar to reticulon family protein [Arabidopsis thaliana] (TAIR:AT2G20590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69787.1); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 14057798    to: 14059870    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g28440.1    Description:  DNA-binding protein-related. Identical to Uncharacterized protein At4g28440 [Arabidopsis Thaliana] (GB:O49453); similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT2G33845.1); similar to Os01g0238600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042538.1); similar to hypothetical protein OsI_001059 [Oryza sativa (indica cultivar-group)] (GB:EAY73212.1); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 14059994    to: 14061392    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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