Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------ANAC46                                              <---------ANAC46                                             <---------MYB52(1)                                            <-------GAMYB                          ---------->DOF2 --------------->AGL15                     <-----------RAV1(1)                <----------DOF2<------- ------MYB52(1)                            <---------MYB46(3)                 --------------->AGL15 ----ANAC58         --------->ATHB12   <---------ANAC58                       <---------------AGL15 ----ANAC58        <---------YAB1 --------->ATHB12   ----------->GT1  <---------AHL20(2)    <-------- -DOF2             <---------AHL20(2)  <---------ANAC58<---------YAB1 --------->AHL20(2)--------->TOE2(3)   ttactctatagaggccctagttttattgggcccaatagattgggtctgttgtgtattgttataagactcaatttatatttctttaaaaagccttattatt  14017000                                                 <--------ATHB1                                                 --------->ATHB12                                                <---------ATHB12                                                --------->ICU4                                      -                                     --------->RVE1(1)                   <---------DAG2            <-                                    --------->ARR11(3)                   <----------DOF2           --                                    --------->GLK1(2)                <---------ZAT14              ---  ------->TEIL                      <---------ARR11(3)           <-----------GT1               ------ --AHL20(2)                        <---------GLK1(2)           <----------DOF2            ----------- -YAB1     <----------DOF2   ------->TEIL   <---------YAB1 <----------DOF2              <---------GLK1(2)   tgtgtatgtgttactttcaatgtttttcttgaacccaaaatctcttatcaatgatttgctgctttctttacttcacttttgttttatatagattgtgaaa  14017100      --------->TOE1(3)      --------->TOE2(3)   <-----------GT1 -------->YAB1               <---------AHL20(2) --------AHL20(2)    --------->AHL20(2) ------->AHL20(2)  <----------DOF2                                  --------->YAB1             ------ ------>AHL20(2)--------->ANAC58                                    <---------ICU4            ------- --->ICU4       --------->ANAC58 ----------->GT1        <-----------GT1                    --------->DAG2 >GT1----------->RAV1(2)    --------->AHL20(2)------>ZmHOX2a(1)    <---------ATHB12   ----------->GT1   attaataacctgaataacaagcttttaatattaaatggaaattagttcctataccaaaaaacctttcaaatcatgaaatttgtgtatttagaaaaattgg  14017200                                                 ------>ZmHOX2a(1)                                                --------->TOE2(3)                                                --------->TOE1(3)                                            --------->GLK1(1)                                        <---------ANAC58                                    --------->CCA1(2)                                    <---------GLK1(1)                                     -----------                                   --------->ARR14(2)                                    ----------->GT1                                   --------->ARR11(1)                                  ---------->DOF2                                   <---------GLK1(2)                                --------->LBD16                       ----------->GT1  <---------ANAC46                            --------->HSFB2a(2) ----->GT1         --------->AHL20(2)   <---------ANAC58                          <---------LBD16 ---->GT1   ----------->GT1      ----------->ARR10 ---------->DOF2  ----------->GT1<---------ANAC46   aaaaataagaaaaatggaaaaaaaaatgtcaaaaatagatttgcgtaaatccttaaaaccaaaaaacaaatagaaaaaaaaaactgcgggaaaggaaaat  14017300                <---------AHL20(2)                --------->AHL20(2)             --------->ARR11(3)             <---------ARR11(3)                <------NtERF2         ---------->DOF2            ----------->ARR10       <------NtERF2             --------->At5g28300--------->YAB1      ------>NtERF2              <-------GAMYB ------------>CBF   <---------GLK1(2)     <----------ID1             <---------MYB46(3) <---------ATHB12      ------>ZmHOX2a(1)    --------->RAP2.3(1)       <---------ZAT18 ------>NtERF2 --------->ANAC46    --------->ATERF1(1) --------->ANAC58     --------->ANAC58   ------------>CBF   <---------ATERF1(1)  --------->ANAC58     --------->ANAC58  ----------->RAV1(1)                <-- >GT1--------->RAP2.3(2)--------->ANAC46     --------->ANAC46------>NtERF2    ----------->TBP   -----   agaagaggcgccaaagattttatttcaagcagcgcggttagagtctcgcgccaataaacataccgccacaatctccttctacataaacagccctaatcct  14017400                                                                    ------>NtERF2                                                                   --------->bZIP60(1)                                                                   <---------bZIP60(1)                                                                   --------->ANAC58                                                                   --------->TGA2(1)                                                                   --------->ANAC58                                                                   --------->ANAC46                                                                 <---------TGA2(2)                                                                ----------->TGA1                                                              -------->HAHB4                                                              <---------ICU4                                                              --------->YAB1        ------------>CBF                                     --------->ICU4       --------->TOE2(3)                                     <---------YAB1       --------->YAB1                                   --------->YAB1  ------------>CBF                         ----------->GT1 <---------ICU4 --------->TOE2(3)             <----------DOF2         <---------YAB1          ---------->DOF2 -------CCA1(2)              ------>ZmHOX2a(1)         <---------TOE2(3)  --------->ZAT14 ->ZmHOX2a(1) *TSS   --------->YAB1<-----------GT1    <-----------GT1     <---------ZAT14           -   ctatctcaatctcaatctctcattcatcatcctcttttttcaatctcgtttaaaattaacataatgatgacgccagtgaagaaaagtatcgccattagac  14017500                                                                      ----------->ARR10                                                                 <---------ANAC58                                                           --------->YAB1                      ------                                                           <---------ICU4       <---------ALFIN1 ----                                                           --------->ATHB12 =========================             <---------ARR14(2)                            <--------ATHB1   ------>ZmHOX2a(1) <------ZmHOX2a(2)             --------->ARR14(2)                           <---------ATHB12  =========================HOX2a_HOX2a          --------->ANAC58                                --------->ICU4  ------>ZmHOX2a(2)  --------          --------->ANAC46                        <---------TOE1(2) --------->REM1(2)        <-------          --------->ANAC58                       ================================HOX2a_HOX2a <-------         <---------LBD16          <---------CCA1(2)       <---------YAB1  ===========================   <---------ANAC58            ------>ZmHOX2a(1) ------>ZmHOX2a(1) --------->ALFIN1          <-------   <---------ANAC58       --------->TOE1(1)     --------->TOE2(3)<---------ANAC46            --------  <------NtERF2           --------->TOE2(1)     --------->TOE2(2)<---------ANAC58            -------- -------->ALFIN1         ------>ZmHOX2a(1)     --------->YAB1  <---------At5g28300         ----------   cggtgtcgttctacggaaacgggcttcctcgtcctcgtttcttcgataatcctaagttcaatgattaccgtgttgatcctcccctctctgtgctagatcc  14017600                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   -- >ZmHOX2a(2)                                                                                      --- -->ZmHOX2a(1)                                                                                   <--- =HOX2a_HOX2a                                                                        --------->TOE1(3) ->AGP1                              <------MYB46(1)                                 --------->TOE2(3) --ARR11(3)                          <------MYB83                          ------>ZmHOX2a(2)     <--- --GLK1(2)                          <---------AtMYB61                     <------ZmHOX2a(2)      <--- ===HOX2a_HOX2a              <---------WRKY12          --------->ARR14(2)--------->ARR14(2)  -------- --ARR14(2)                  <---------WRKY38(1)  --------->ANAC55(2)  <------NtERF2--------->ANAC58< ->ARR11(3)                 --------->WRKY18(1)   --------->ANAC46    --------->RAP2.6(2)   --------- ->ARR14(2)                <-----------HVH21  <-----------HVH21      <---------LBD16--------->ANAC58- ->ARR10        --------->CCA1(2)<---------MYB46(3)    <---------ARR14(2)<---------ARR14(2) ---------   tcttctctcatgggcgagagacgctcactggtcaatgggtggtctcaacttcacgcgtctccgtctccaaggccggatcgaaggaaacgtcaacaagctc  14017700                                                          ------>ZmHOX2a(2)                                                          =======================HOX2a_HOX2a     --------->ZAT2                                       ==========================HOX2a_HOX2a     <---------ZAT2                                      ========================HOX2a_HOX2a -------->ZAT18                                          --------->CCA1(2) ---------ZAT18                                         <---------ARR11(3) -------->ZAT14                                         --------->ARR11(3) ------->AtLEC2                                         --------->AGP1 ------>LBD16                                           <---------AGP1 ------ANAC46                                           <---------ARR14(2) ------ANAC58                         <---------HSFB2a(2)<------ZmHOX2a(2) ------ANAC58                         --------->HSFB2a(2)===========================HOX2a_HOX2a ->ZAT2                            --------->GLK1(2)    --------->ARR14(2) ---------ZAT14    --------->ANAC46--------->ARR14(2)  <---------GLK1(1)         --------->At4g35610 >ANAC58     <---------GLK1(1)     <---------ARR14(2)  --------->GLK1(1)         <---------At4g35610 -------->REM1(2)<---------ALFIN1  ------->TEIL >>>>>>>>>TBF1                ------>ZmHOX2a(1)      - >ANAC58     --------->GLK1(1)    <---------CCA1(2)   ----------->ARR10   ------>ZmHOX2a(1) ---------   cgtgcacagcttgagaaatccacccctgtgaaactcgaatctggaaggaagaagaagagatctggttctgagtctcctccttctgctccgattgtggtga  14017800                  ----------->HVH21                 ------>ZmHOX2a(2)                =============================HOX2a_HOX2a                --------->CCA1(2)                <------ZmHOX2a(2)               --------->AGP1               <---------ARR14(2)               ------>ZmHOX2a(2)           <------ZmHOX2a(1)               <---------ARR11(3)              <------ZmHOX2a(2)           ----------->GT1               --------->ARR11(3)              --------->At4g35610       <-----------RAV1(2)               <---------AGP1<---------At4g35610===================================HOX2a_HOX2a               --------->ARR14(2)     =================HOX2a_HOX2a     --------->GLK1(2)              <---------CCA1(2)<---------YAB1  ====================================HOX2a_HOX2a             ----------->ARR10 --------->ICU4 <---------ARR14(2)<---------MYB46(3)     <---------------AtSPL8 <---------YAB1    --------->ARR14(2)----------->GT1    ===================HOX2a_HOX2a    ================HOX2a_HOX2a<-------GAMYB                   <---    <------ZmHOX2a(1)    --------->GLK1(2)    <---------AGP1   <---------AtMYB61             --------    ====================HOX2a_HOX2a   <------ZmHOX2a(1)<---------REM1(1) --------->YAB1    <---------YAB1 -------->TOE1(2)============================HOX2a_HOX2a     --------->ALFIN1            --------->YAB1 -->GT1  <-------TEIL   <---------GLK1(2)    <---------CCA1(2) --------->ALFIN1          <---------At4g35610   aacgaaggaggtacttagatctgaacgattctgatgatgaggaagtcggatctgaagatgaaggtgtggttagaatcaggagaaaactctctgatgattt  14017900  Previous    Next  AGI:  At4g28300.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G14540.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71577.1); contains InterPro domain Protein of unknown function DUF1421 (InterPro:IPR010820) Range:  from: 14014659    to: 14017074    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g28310.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69747.1) Range:  from: 14017414    to: 14018214    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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