Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------DAG2                             <----------DOF2                          <-----------GT1                         <---------ATHB12                       ------>MYB83                                                             -----                       ------>MYB46(1)                                     --------->ANAC58    ------                     <---------MYB59                                 ---------->DOF2          -------                  <---------WRKY18(1)        <----------DOF2--------->ANAC55(2)        <---------TOE2(3) -DOF2           ----------->HVH21     ----------->HVH21  <-----------GT1  --------->ANAC58  --------   aagttgaagttacgaagacttgacctaatcactttctgtttccgacgctttgctctgttttcacttaatcccaaagcacgttattgtttaagaaaaaaag  14008600       ---------->DOF2      --------->AHL20(2)      <---------AHL20(2)     <---------YAB1   <---------ICU4  --------->AHL20(2)   <--------P  --------->ICU4     ----------->GT1                  <----------DOF2  <---------ATHB51   <---------MYB46(3)               ------>ZmHOX2a(1)                         <----  <---------AHL20(2)--------->ALFIN1                ------>ZmHOX2a(2)                           <---- ------>GT1         <---------AtMYB61             --------->ARR11(3)                            <---- ------------------>ANAC81                        <---------ARR11(3)               --------->WOX13(1) -->DAG2     ---------->DOF2--------->AHL20(2)  <---------YAB1       ----------->GT1  --------->YAB1 -->DOF2 <----------ID1<---------WOX13(1)     --------->YAB1      <---------bZIP60(2)<---------ATHB12   ctaaataattaaagacaaaggagtggttgattaaacaaacaagtgatattatgatcctttaaaaaatgacatggtatatcgaaaacaatcatcttcttgc  14008700                      ------>ZmHOX2a(2)                             --------->YAB1                     <------ZmHOX2a(2)                             <---------AHL20(2)                    --------->ARR11(3)                            --------->AHL20(2)                    <-----------ARR10                           --------->AHL20(1)                    <---------AGP1                              <---------AHL20(1)                    <---------ARR11(3)                          <---------ARR11(3)                    --------->ARR14(2)                 --------->ANAC58                    ----------                    --------->AGP1                     <---------ANAC55(2)            --------->LBD16                    <---------ARR14(2)                 --------->ANAC55(2)           --------->HSFB2a(2)                   <---------CCA1(2)                   --------->ANAC46              <---------HSFC1(1)          --------->MYB52(1)                           --------->ANAC55(1)      <---------ICU4 -----ANAC58    <---------ZAT14                        --------->ANAC58        --------->ICU4    ---- -----ANAC58    --------->ZAT14          <----------DOF2  ----------->RAV1(1)  <---------YAB1    ---- -----ANAC46   --------->ALFIN1       ------>NtERF2  <---------ALFIN1  --------->YAB1<---------HSFB2a(2)   gtagcaactcaaaaacggtgcagatctactactaattcgatgcctttagatagacacacgcaacaatatataataagagtgatgattccagaaaaaagaa  14008800                                 ------>ZmHOX2a(2)                                --------->GLK1(1)                                <---------GLK1(1)                                               -----                               <---------ARR11(3)                                 --------->TOE1(2)                ----------->GT1--------->ARR11(3)                               <-------TEIL    <---- >DOF2      --------->ICU4     <---------AGP1                        <---------ANAC58 <<<<<<<<<<<<<<< ----------->AtSPL3            ------->TEIL                          <---------ANAC58 ----------->RAV1(1) ----------->AtSPL8    --------->MYB52(1)  <----------DOF2         --------->ARR11(3)----------->HVH21   acgtactctttggaaagattgtaagtaccgatggatctcttctgtctttaagcctttggaaacttgagagagcttgtacaggttcatgcgacaatggcag  14008900                                                                         <------ZmHOX2a(1)                                                                      <-----------RAV1(2)                                                               <---------ZAT18                                                               --------->ZAT18                                                              <---------ANAC46                <---------AHL20(2)                          <------MYB46(1)       <---------YAB1            --------->ATHB12                                <------MYB83--------->At4g35610   ----------->GT1                                          <---------MYB46(3) --------->ICU4       < ---->At4g35610--------->AHL20(2)     <--------P           --------->ALFIN1 <---------ARR11(3)      - -----At4g35610<---------AHL20(2)   ----------->GT1        <---------AtMYB61--------->ARR11(3) ------ <<LFY     --------->ICU4           <---------ANAC46       <---------DEAR3(1) <---------MYB59 <------   aagaacagagaaaatgatttatttgggttaagagaatggggtaagaatgtttagatcgagggtggtgcagaagcaggagaccttattatacacacataca  14009000         <---------YAB1     <---------AHL20(2)   <---------YAB1 <--------HAHB4 <---------ICU4                                       <---------YAB1 <---------AHL20(2)                              --------->ANAC58                         --------->YAB1 --------->AHL20(2)                              --------->ANAC58                     <---------AHL20(2) -------->ATHB1                             --------->LBD16                        ------>MYB83 --------->ATHB51                    <---------AHL20(2)                            ------>MYB46(1) --------->YAB1          *TSS        --------->AHL20(2)                          <---------MYB46(2) ---------ATHB51       <---------TOE1(3)--------->ARR14(2)                       <---------MYB59 -------->ICU4   <---------AHL20(2) --------->AHL20(2)--------->ICU4             <---------MYB111(1) --->ANAC46 <---------YAB1--------->ALFIN1<---------LBD16          <------ZmHOX2a(1)  --------->AHL20(2) -TEIL<---------YAB1   <---------TOE2(3)<---------ARR14(2)   ---------->DOF2     --------->TOE2(3)   caattatttttattcttattttcttaaggtgtgcaaaattaaaatccggacaagttatgattttaaagaggaagaaacgtctacctaattaaaaataagt  14009100                                                                    --------->MYB52(1)             --------->ANAC46                                     <---------At4g35610             --------->ANAC58                                     --------->At4g35610             --------->ANAC58                                    --------->ANAC58        --------->ANAC58                                         --------->ANAC58        --------->ANAC58                                    --------->DAG2      --------->MYB52(1)                                  ---------->DOF2                    --------  --------->DAG2        <----------DOF2                --------->AtLEC2                     --------- ---------->DOF2    --------->YAB1            <----------DOF2 <-----------HVH21            ----------   agataaagtaacgaaacgccattcatcttttttttcttacatgtctgtctttatttcatgaaaaggtcagcaacggatagcatcgttttaaaaaaaagta  14009200                   <-----------GT1                 <---------AHL20(2)             --------->ATHB51             --------->AHL20(2)             <---------ICU4             <---------AHL20(2)                 --------->AHL20(1)            --------->ICU4                      <---------ARR11(3)            <---------YAB1                      --------->ARR11(3)          --------->YAB1                 <---------HSFB2a(2)         <---------AHL20(2)              --------->HSFB2a(2)         <---------YAB1            <---------------AGL15         --------->AHL20(2)        <---------AHL20(2)        --------->AHL20(2)        <---------AHL20(1)     --------->AHL20(2)           --------->AHL20(1)   <---------YAB1   <---------ARR11(3)           --------->AHL20(1)   --------->AHL20(2)   --------->ARR11(3)--------->ANAC46  <---------AHL20(2)            <---------AHL20(2)            -- --->GT1<---------AHL20(2)      <---------AHL20(1)   <---------AHL20(2)         ----------->GT1   --- >DAG2  --------->AHL20(1)     --------->AHL20(2)--------->AHL20(2) <---------AHL20(2)  --------->DAG2 >DOF2  <---------AHL20(1) --------->AHL20(2)   <---------AHL20(1)  --------->AHL20(2) ---------->DOF2   aacaagataatataattatttatacacaactaaatatatatttatagaaaaatatttattttagtttgaataaaattgtatgttgaaaaaaaagtatgaa  14009300           --------->ICU4        ----------------->AGL1                                                              <--------   ---------->TaMYB80                                                                      --------->ARR11(3)   --------->ARR14(2)                                                           <---------DAG2     --   <---------ARR14(2)                     ----------->GT1    ----------->GT1    <----------DOF2   <-- --------->GT1                            <---------------------WRI1        <---------CCA1(2)-------- -------->GT1 <---------ATHB12    <----------DOF2     --------->ANAC46   --------->LBD16   <---------ARR11(3)   ttggaaatatgccctaatgagtccatgagaccatgacttttgtaggggaaatatacacagaaattgcaaaattcccccataactttatcccaatatcata  14009400                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                ----------->RAV1(1)               <--                                                            <---------HSFB2a(2)                  ----                                                      <---------------AGL15                      ----                                                      --------------->AGL15              <---------ZAT2                                                     <-----------------AGL2              --------->ZAT2                                                     <-----------------AGL3             ------>MYB46(1) -YAB1--------->CCA1(2)                            --------->GLK1(2)         --------->ARR14(2) <---- ------->YAB1                       --------->CCA1(2)<-----------------AGL1  --------->ARR11(3)------ -----TEIL                <----------ID1 --------->GLK1(2)  --------->HSFB2a(2)         ------>MYB83- ->YAB1    --------->GLK1(2)   ---------->DOF2    <---------ARR14(2)         <---------ARR14(2)------   ttcataagataagaatttggctctgaaaaaaacaaaagataagaatttggcagtttctgtttctggcaacacaatagtagatactgaaccaagctcgatg  14009500  Previous    Next  AGI:  At4g28270.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.2); similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.1); similar to ring domain containing protein [Capsicum annuum] (GB:AAR99376.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 14007545    to: 14009025    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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