Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->ANAC58    --------->ANAC58  ---------->DOF2                <----------DOF2 ---->TOE2(3)          --------->ARR11(3)                                                     <------ --->YAB1  --------->ANAC58      <---------DAG2                                     --------->TOE2(3) ----ICU4--------->MYB46(3)     <---------DAG2                                --------->TOE1(3) --->ATHB12--------->ANAC58  <-----------GT1                                  <---------MYB59 ------- -->ICU4-------->P    <---------CCA1(2)       <---------ANAC58                --------->TOE2(3)     - ---ATHB12------->GAMYB<---------ARR11(1)     <---------ANAC58               <---------ANAC55(2) <---   ttaacaaagcaaccagcaaatttcaaatcttttacctttttcattcttccatgcctcttctgtttacaaaactcgagatacctaaaccacaaattgatat  13990100                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                   --------->DEAR3(1)                           <----                                                  --------->DEAR3(2)                            -----                                                 --------->MYB52(1)                             <----        --------->TOE2(3)                  --------->ANAC46                                     -----       --------->ANAC46                   ------>ZmHOX2a(1)                  <----------DOF2   ------     <-----------GT1                   <<<<<<<<<ARR1           <---------GLK1(2)               ------ <----------DOF2      <---------ATHB12 <<<<<<<<<ARR2           --------->ARR11(3)              ------ ---GLK1(1)          --------->GLK1(2) <<<<<<<<<ARR1           <---------ARR14(2)            <------- -->bZIP60(1)       --------->WOX13(1) <<<<<<<<<ARR2--------->LBD16    XXXXXXXXXXXXXXXXXXXXX>MIR831<- -------->TOE2(3) <------NtERF2     --------->MYB46(3)         --------->ARR14(2)<---------------AGL15 --------GT1     ------>NtERF2 --------->TOE2(3)<---------ALFIN1      --------->GLK1(1)  <-----------HVH21   cacctttatacctcatcgtcgccaatctataaatctcaacaatcctagccacaccggcgaaatcagatactgatttcttctttctcttcttagtcacacg  13990200      --------->GLK1(1)      <---------GLK1(1)  <------NtERF2 ------>NtERF2 -------->DEAR3(1) ---------ALFIN1 ------->ATERF1(1) -----NtERF2 -------ATERF1(1) --->NtERF2               --------->GLK1(1) ----->ANAC58             --------->At4g35610 ----->ANAC58             <---------ZAT2 ----->ANAC46             <---------At4g35610                                     <---------ANAC58 ---MYC2            --------->MYB52(1)                                            <---------ANAC58 -->MYC2           ----------->TGA1                                            --------->ZAT18 ---MYC3           ----------->HVH21                                           <---------ZAT18 -->MYC3         --------->At4g35610                                        <---------ANAC58 --->ANAC46      <---------ZAT2                                             <---------ANAC46 --->ANAC58      --------->ZAT2                                             <---------ANAC58 --->ANAC58   --------->LBD16                                           <----------DOF2 --ALFIN1  ------>ZmHOX2a(1)              --------->TOE2(3)       --------->ARR11(3) --------ABI4(2) <---------At4g35610   <-----------GT1            <---------ARR11(3)               <-   cgccaccgatttcctccgtagctgacggagctcatcgagcttaacctcatagtcaatataggctatgaaatcttctttgagtgggcttggacgcttgagc  13990300                           <---------ARR11(3)                           <-----------ARR10                --------->At4g35610                                    <---------ARR11(3)                ------>NtERF2     <XXXXXXXXXXXXXXXXXXXXMIR869.2        --------->ARR11(3)                <---------At4g35610       --------->ZAT2            --------->HSFC1(1)               <---------DEAR3(1)--------->ZAT2                     <---------HSFC1(1)               --------->DEAR3(1)--------->At4g35610                --------->HSFB2a(2)       -------            --------->ANAC58     <---------At4g35610   --------->GLK1(1)                   ------>MYB46(1)            --------->ANAC58 ------>ZmHOX2a(2)         <---------GLK1(1)                   ------>MYB83            --------->ANAC46<------ZmHOX2a(2)         <---------ARR11(3)                 ------->GAMYB  --------->ANAC58         --------->ARR11(3)         --------->ARR11(3)<------ZmHOX2a(2)--------->AtMYB61  --------->ANAC58   <----------DOF2      <---------ZAT2            <---------HSFB2a(2) --------->MYB46(3) --------MYB52(1)  --------->At4g35610    --------->At4g35610       >>>>>>>ZML2    <-----------HVH21   cggtactcaaacttacgccgctgcttcacgatctcagctatctcagcacgagtgaagatttctcttcgttctagatcatcaagctcgtcaaccatccgct  13990400                                                  --------->ATERF1(1)                                                  <------NtERF2                                                 <---------ATERF1(1)                                                 ------>NtERF2                                                 --------->LBD16                                                 <---------MYB46(3)                                               <------NtERF2                             <---------ZAT2  <---------DEAR3(1)                             --------->At4g35610<---------ANAC46  <------MYB46(1)                             <---------At4g35610<---------DEAR3(1)<------MYB83                             --------->ZAT2 <---------LBD16     --------->ALFIN1                           <---------RAP2.6(2) <---------LBD16  <--------P                    <------NtERF2       <---------GLK1(2)  --------->MYB52(1)                   ------>NtERF2<---------At4g35610 ------>NtERF2--------->SPL7    <------NtERF2 <---------DEAR3(1) --------->HSFB2a(2)*TSS  ------->GAMYB                 <-------- -->At4g35610   <-----------HVH21    <---------HSFB2a(2)--------->YAB1                 <<<<<<<<<TBF1   cgaggcggtattgaactacgtcggccatggctgctgcttctcgattctcggcggggactgataacggtagggcaaacgcttaatgcttcttcttctttct  13990500                                                                    --------->TOE2(3)                                                                    --------->YAB1                                                                   ----------->GT1                                                               ------------>CBF                                                              >>>>>>>>>>>>>>>>>LFY                                                            --------->DEAR3(1)                  <---------RAP2.6(3)                      --------->ANAC46      <---------AHL20(2)                                   --------->ANAC58     --------->AHL20(2)                                    --------->ANAC58    <---------YAB1<---------SPL7                         <-----------GT1 <---------MYB52(1)                                  <---------AHL20(2) --DOF2  <---------AHL20(2)       <------------CBF  --------->AHL20(2)                       <-------   tcagttattatataatgggccgtaagagtaagaagctattgggcctacgtctaattttatcacggcccaatgttaaaactcttgctatgagctatttgtt  13990600                                                                                                   --                                                                                        --------->LBD16                                                                                        ------>NtERF2                                                                                        <---------RAP2.6(3)           ---------->DOF2                                                             --------->RAP2.3(2)     <---------LBD16                                                                <-----------RAV1(1)    <---------HSFB2a(2)                         --------->At4g35610               <---------At4g35610    <---------ANAC46                            <---------At4g35610               --------->At4g35610    --------->HSFB2a(2)                    <----------DOF2                        ----------->RAV1(2)   <---------LBD16     *TSS          ----------->HVH21                    ------>ZmHOX2a(1)        <- ----RAV1(1)    <----------DOF2      ----------->TGA1  <------------------------ANAC81 --------->RAP2.6(2)   gttgttctgggggaaaagctttagaagttgaagacgacgatgacgcttttagctctctcttcttctctgtcttctccttccttcttctgccgcaattctc  13990700                                                                                       <------NtERF2                                                                                      ------>NtERF2                                                                                    <------NtERF2                                                                                    --------->ATERF1(1)                                                                                   <---------RRTF1(1)                                                                                   <---------ATERF1(1)                                                                                   <---------DEAR4(2)                                                                                   ------>NtERF2                                                                                   --------->LBD16                                                                                   <---------ERF1                                                                                   <---------RAP2.3(1)                                                                                   <---------ORA47(2)                        <---------CCA1(2)                                         --------->ATERF1(2)                    <---------ANAC58                                              <---------DEAR3(1)                    <---------ANAC58                                              <---------RRTF1(2)                    <---------ANAC46                                              <---------RRTF1(3)                    --------->ANAC55(2)                           ----------->RAV1(1)<---------ANAC46                <-----------HVH21                                 <---------ALFIN1<---------ATERF1(2)               --------->ALFIN1                  --------->At4g35610       --------->AHL20(2)               ----------->HVH21            --------->YAB1      ------>NtERF2     <---------RAP2.3(2)               <-----------RAV1(1)         <---------YAB1       --------->LBD16   <---------DREB2C(2)             ------>ZmHOX2a(1)        ----------->GT1          --------->ANAC46   <---------RAP2.3(3)           ----------->RAV1(2) <---------------AGL15           --------->ANAC58  --------->RAP2.6(3)           ================RAV --------------->AGL15           --------->ANAC58  <---------LBD16 <--- ------->ARR14(2)   <---------ANAC55(2) <---------YAB1        <---------LBD16   --------->MYB52(1)  < --------ARR14(2) <---------ANAC46    --------->YAB1     <---------GLK1(2) <---------AHL20(2)   -----   gtattcgtttctctcctgtgtcgcgtatttcttctcttaatggtgataataagcttacaaattctccgccacagtttttaaatgccggcgcgagtctccg  13990800                  --------->HSFC1(2)                  --------->HSFB2a(1)            --------->LBD16            <---------LBD16                                                                      <---           <---------LBD16                                                                      -----          <---------LBD16                                                                      ------          --------->ATERF1(1)                                                 --------->ALFIN1 ======          <------NtERF2                                                  ============================        --------->ARR14(2)                                ---------->DOF2---------->DOF2       <-----        <---------PCF2                                 <---------HSFB2a(2) --------->DAG2     <------        <---------ARR14(2)                           <-------TEIL      --------->MYB46(3)    <-------   <-----------RAV1(1)                              --------->ALFIN1  --------->ANAC58       <------- ------MYB52(1)   <---------HSFB2a(1)             --------->ZAT2      --------->ANAC58    ----------- ---------MYB52(1)<---------HSFC1(2)             --------->ALFIN1     --------->ANAC46    ----------- ---->LBD16<---------ANAC46--------->ALFIN1 ----------->HVH21        ------->TEIL       <---------At4g35610   tcgttttgtggctccggggaagtttccaagtgtgagacttagggttttgacgaggtgcgagaaagaaaatgcacccaaaggtgggattgaagatgacgcg  13990900                                                                                                    <                                                                                                    - ---NtERF2                                                                                      <---- ---->LBD16                                    >>>>>>>>>>WRKY38                              <------MYB83 --->ALFIN1                                    >>>>>>>>>>WRKY26                             <-------- =====================MYC_MYB             <---------CCA1(1)                <---------AHL20(2)<------MYB46(1) =====================bZIP_DOF            <---------RVE1(1)               --------->AHL20(2)--------- -----CDC5         --------->ZAT18       --------->ARR11(3)               <---------AHL20(2)<-------- ---LBD16   <---------TGA1a          <-------TEIL        --------->At4g35610              <-------GAMYB --ANAC46   <---------O2        <---------WOX13(1) ---------->DOF2        --------->YAB1 --------->MYB55(2) --bZIP60(2)==================================================bZIP_DOF   <---------ATHB12--------->MYB111(2) >HVH21<---------ANAC58      ----------->HVH21 >>>>>>>>>>WRKY43 --------->ARR14(2)       <---------MYB46(3) >TGA1 <---------ANAC58   ------>NtERF2  <---------ARR11(3)     <---------ARR14(2)       --------->MYB52(2)   gagcgatttgcgagacgagagagcacgatgcctgatagattcagatatttgaccaaagaagctccagatagtccaattatatggccatggtttgttggta  13991000  Previous    Next  AGI:  At4g28200.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO21222.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949) Range:  from: 13987608    to: 13990456    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g28210.1    Description:  EMB1923 (EMBRYO DEFECTIVE 1923). similar to unnamed protein product [Vitis vinifera] (GB:CAO41230.1) Range:  from: 13990623    to: 13992084    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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