Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------ATHB12      <------ZmHOX2a(2)  --------->MYB46(3)  --------->DEAR3(2)                  --------->At4g35610 ------->TEIL                         <---------At4g35610    <---------DAG2 -------->MYB52(1)            ---------->CDC5           ------>ZmHOX2a(1) ----->GAMYB               --------->At4g35610     --------->At4g35610--------->ANAC58 ------>MYB46(3)           <---------At4g35610     <---------At4g35610--------->ANAC46        ------- -------MYB52(2)         <---------ZAT18          ----------->ARR10   --------->ANAC58 <---------ATHB12 ->ALFIN1                --------->ZAT18    ------>ZmHOX2a(1)<----------DOF2         --------->WOX13(1)   acgaaccgatcattttgccaacgagagtgagctcatcgctagcttcctcgatgagctcctcgactttaccacaagcaagtcgcttctcaatcactcccca  13930000                                       --------->At4g35610                                       <---------At4g35610                                      ------->TEIL                                   <---------GLK1(2)                               <---------ANAC46                                      <---------ARR11(3)                               <---------ANAC58                                      <---------ARR14(2)                              --------->RAP2.3(1)                                    --------->ARR14(2)               <---------ALFIN1<---------ANAC58                                     <------ZmHOX2a(1)             <---------ALFIN1 --------->ATERF1(1)                             --------->AtMYB61            --------->ARR14(2)<------NtERF2                                  --------->MYB46(3)          --------->LBD16    <---------ATERF1(1)                             <---------MYB55(2)         <---------HSFB2a(2) ------>NtERF2               <---------MYB52(1)<---------ARR14(2)        <---------LBD16     --------->ALFIN1            --------->LBD16   <------ZmHOX2a(1)      <---    <<<<<<<<<TBF1        <---------DEAR3(1)  <---------ALFIN1<---------ZAT6--------->ARR14(2)    <--- -->LBD16--------->HSFB2a(2)<---------DEAR3(1)     <----------DOF2     <---------LBD16      <--------   gtcttcttcttccggacacaccttgagacggtggcgcatgaagctccccactgctttccgctagtcttcatattcaggaaccaccaggattttcctttag  13930100                                                                             <-----------HVH21                                                                        <---------SPL7                                                                 <---------ICU4                                                                 --------->ATHB51                                                                 <--------ATHB1                                                                 <------------ATHB5               ---                                                                --------->ICU4<------ZmHOX2a(2)   ---                                                    <---------ALFIN1    ------>NtERF2            ----                                    <------ZmHOX2a(2)           <---------ATHB12   --------->ANAC58 <                            --------->TOE2(3)     <----------DOF2--------->YAB1    --------->ANAC58 -                        ----------->HVH21       --------->At4g35610    --------->ETT(2)         <---- ------ANAC58       --------->At4g35610      <---------At4g35610<---------ATHB51   --------->ANAC46-- ------ANAC58     --------->YAB1  ------->GAMYB <---------At4g35610    ----------->HVH21    <-------- --DOF2        --------->WOX13(1)--------->MYB46(3) --------->REM1(1)  --------->DEAR3(1)   ---------   cgttttgctatcgaggtctatcagcactgacctcaacgatcccagtcgtctgcttcaccttcgccaataatggccgaccgatcacacgctggaacatctc  13930200            --------->CCA1(2)         ----------->ARR10       <---------MYB52(1)      ------>NtERF2     --------->RAP2.3(2)     --------->DEAR3(1)    --------->RAP2.3(1)    <------NtERF2   <---------ATERF1(1)   ------>NtERF2   <------NtERF2  <---------ATERF1(1)  --------->ANAC58  --------->ANAC46  --------->ANAC58  <---------ALFIN1       ------>NtERF2 --------->MYB46(3)     <---------DEAR3(1)                                                          - ------>LBD16 --------->ANAC58                                                                      < --->NtERF2--------->ARR11(1)                                                                  ------ ----->ANAC46<-------TEIL--------->LBD16                                                       <----- ---------ATERF1(1)    <---------LBD16                                                         ------ -------->SPL7--------->ANAC58                                          ---------->ID1         <----- -----LBD16<---------GLK1(2)                <----------DOF2    <-----------------AGL1          ------ ---->NtERF2--------->ARR14(1)             <---------DAG2    --------->WRKY38(1)               <----- -ARR11(3) <---------ARR14(2)         <---------ICU4      <---------ANAC58               <---------MYB59 >ARR11(3) --------->ARR14(2)        <---------ATHB51     <---------ANAC58    <---------ATHB12-------   cggcccgccgctagatacgcttctctccggcgaaatcaaattatgccttttcagattaatgcgttgtctattttggcccattcaatatgggcctaaatat  13930300                                                                                                    <       <----------DOF2                                                                              <   ------->GAMYB                                                                                    < -------->MYB52(1)              --------->At4g35610                                    --------->GLK1(2) -----------GT1         -------->P                                      --------->ARR11(3)          < --->AHL20(1)           ------>MYB46(1)                                 --------->GLK1(2)           - ----AHL20(1)           ------>MYB83                                    <---------ARR14(2)          - --->AHL20(2)          <---------ALFIN1                                 <---------ARR11(3)         -- ----AHL20(2)         ------->GAMYB                              *TSS   --------->ARR14(2)         -- --->ARR11(3)         --------->MYB46(3)                   --------->TOE1(3)          <---------ARR11(3) ----ARR11(3)     <---------GLK1(1)    ---------->DOF2     --------->TOE2(3)          --------->ARR11(3) -->AHL20(2)<----------DOF2     <---------At4g35610        <---------MYB59      --------->CCA1(2)<---   attaacgggctttactttggataacccacccctaagcagagcaaagagtctaatcggaaaacctaaattctgaaaatctccgatatgagattttggacat  13930400            ----------->ARR10         ========================MYC_MYB         <----------CDC5        --------->At4g35610        ------>NtERF2        <---------At4g35610       --------->DEAR3(1)       --------->RAP2.3(2)      --------->DEAR4(2)      --------->RAP2.3(1)      <------NtERF2      --------->ATERF1(1)     <---------At4g35610     --------->DREB2C(1)     <------NtERF2     ------>NtERF2     <---------ATERF1(1)     <---------DREB2C(1)    --------->ATERF1(2)    --------->RAP2.6(2)    <---------ATERF1(1)    --------->RAP2.3(2)    --------->DEAR3(1)    <---------ATERF1(2)    <---------DEAR3(1)   --------->RAP2.3(1)   --------->ERF1   --------->ATERF1(1)   --------->SPL7  <------NtERF2  <---------DREB2C(1)  --------->DREB2C(1)  --------->ATERF1(1)  <---------At4g35610  ------>NtERF2  --------->At4g35610  <---------ATERF1(1) <---------SPL7                   --------->ANAC58 <---------ATERF1(1)              --------->ANAC55(2)           <---------ZAT18 <---------ERF1        <---------ANAC46                         --------->ZAT18 <---------RAP2.3(1)   --------->bZIP60(1)                      <---------ZAT14 ------>NtERF2<---------GLK1(2)   <---------ANAC55(2)        <---------ANAC46 ---------RAP2.3(2)    --------->TGA1a                     <---------TGA1a ---------DEAR3(1)     --------->O2            <---------ARR11(3) ---------RAP2.6(2)    <---------O2            --------->ARR11(3) ---------ATERF1(2)    <---------TGA1a     ==========================bZIP_DOF -------->DEAR3(1)     ===============================bZIP_DOF  --------->ZAT14 -------->ATERF1(2)  ------>NtERF2--------->ANAC46         --------->TGA1a ------->At4g35610  ----------->HVH21      ---------->DOF2 --------->O2 ------->ATERF1(1)  --------->DEAR3(1) <---------ZAT6      <---------O2 ------DEAR3(1)--------->GLK1(2)  --------->ANAC58    ------->TEIL            --------->DOF5.7(2)   cggcggccgccgctgagattctccgacgtgatgagcacgtagtgagaaagctcttgaaccctcgtgtgtactccaaactcgttaatgcattctctgaaac  13930500                                       <---------ZAT2                                       --------->ZAT2                                       <---------At4g35610                                       --------->At4g35610                                    ------>ZmHOX2a(1)                               <--------P                                   --------->TOE2(3)                               <---------MYB52(1)              ------>ZmHOX2a(2) --------->ARR14(2)                              <---------LBD16              ==================HOX2a_HOX2a                                 <---------ATERF1(1)              =============================HOX2a_HOX2a                     --------->ZAT14             ===================HOX2a_HOX2a                          --------->ANAC58           <----             <------ZmHOX2a(2)  <---------ARR14(2)                   --------->ANAC46          <-----             ==============================HOX2a_HOX2a               --------->ANAC58 --------->At4g35610     ------>MYB83         --------->ARR14(2)                       --------->MYB46(3) <---------At4g35610     ------>MYB46(1)      <---------ARR14(2)                       ---------->DOF2--------->LBD16  ----------------->AGL3 <------ZmHOX2a(1)           <---------ARR14(2)    <---------ZAT18     <-----   tgaaaccaaattgagatcgctatgtgaggattcaaatcctcagctcaagaatgcggtttcagttttccaacaagcagtcgactccggtagctctcttgct  13930600                                   --------->HSFC1(1)                                   --------->HSFB2a(2)                                   <---------HSFB2a(2)                              --------->ANAC58                             <---------ANAC58                              --------->ANAC58                             <---------ANAC58    <------NtERF2            --------->SPL7                              <---------YAB1   --------->LBD16           <---------ZAT18                       --------->LBD16  --------->LBD16          <---------SPL7   --------->ANAC58      --------->ANAC46 <---------LBD16         <---------------AtSPL3                  <---------LBD16 ------DOF2              <---------------AtSPL8                 <---------At5g28300 ----ANAC58            <---------ZAT2       --------->ANAC58   <-----------GT1 ----ANAC58         ---------->DOF2<---------HSFC1(1)    <---------YAB1 <---------ARR11(3)  ---------   ttcgccggaaataatctcatggcaaagctggtacgctctagaaaccacgaactagcattttcattttaccgcaagatgcttgagactgatactttcatca  13930700                <---------ANAC58                <---------ANAC58                <-------GAMYB               <------MYB46(1)               <------MYB83           <---------ANAC46        <----------CDC5       --------->At4g35610    <-----------HVH21                                                                            <---   <-----------RAV1(1)                              --------->ARR14(2)                          <---- --------->ANAC55(2)                              --------->LBD16                     --------->ALFIN1 <---------ANAC46    <----------DOF2        --------->SPL7<---------SPL7              <---------ANAC58 <---------ANAC58   <---------ANAC58     --------->ANAC55(2) <---------LBD16          <---------ANAC58 <---------ANAC55(1)<---------ANAC58     <---------ANAC58<---------ANAC58             <---------ANAC46 <---------ANAC55(2)<---------ANAC46     <---------ANAC58<---------ANAC58        <---------REM1(1) <---------ANAC58<--------P              <---------ANAC55(2)--------->SPL7   <---------TOE2(3)  <---- >YAB1 <---------At4g35610     <---------ANAC46 <---------LBD16         <---------ANAC46--------->ALFIN1   atttcgtgtcgctgagtgggttgcttgaatgttatgtgcaaatgcgtaagaccgggtttgcgttcggggttctcgcgttgatgttgaagcgtgggtttgc  13930800                   --------->ARR11(3)                     ---------->DOF2                       <----                   <---------ARR14(2)                  ----------->GT1           --------->CCA1(2)      --------->ZAT18  ------>ZmHOX2a(1)    <---------ARR14(2)        --------->ZAT14        --------    --------------->AtSPL8                  --------->GLK1(2)         <---------ZAT14   --------->ANAC58 -------DOF2       <---------ARR11(3)       --------->ARR14(2)     --------->MYB52(2)   --------->ANAC58 -----ANAC58       --------->ARR14(2)      <---------GLK1(2)     <---------MYB52(1)  <----------ID1 -----ANAC58 --------->YAB1---------->DOF2<------ZmHOX2a(1)--------->DAG2    XXXXXXXXXXXXXXXXXXXX>MIR1886.1   tttcaatgtgtacaatcacaatatcctcttaaagggtttatgtaggaatctggaatgtggtaaagctgttagtttactgagagaaatgagacgaaattct  13930900  Previous    Next  AGI:  At4g28005.1    Description:  similar to NADH-ubiquinone oxidoreductase-related [Arabidopsis thaliana] (TAIR:AT5G52840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49517.1); contains domain NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT (PTHR12653) Range:  from: 13929661    to: 13930197    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g28010.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16865.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 13930365    to: 13933276    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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