Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->ANAC55(2)                                                                         <---------LBD16                                                               ----------->HVH21                                                              <------NtERF2                                                 <-----------RAV1(2)    <---------ANAC46                                <---------HSFB2a(1)           --------->LBD16                        <---------ZAT2           <---------LBD16  <---------DEAR3(1)   --------->ANAC55(2)                        --------->ZAT2          ------>ZmHOX2a(1)--------->SPL7       --------->MYB59                     <---------At5g28300   <---------GLK1(1) <---------LBD16          <---------TOE2(3)                    <-----------GT1  <---------ANAC46        <------NtERF2<---------ANAC55(2)      --          <---------GLK1(2)     --------->HSFB2a(1)         <---------LBD16--------->LBD16         --          <---------ARR14(2)    <---------HSFC1(2)  <------ZmHOX2a(1)--------->ALFIN1 <---------TOE1(3)   atctctgttttggattctgaatttacagcttggagggttctgtagaactcctcaggaagaggcccgggacggtgatgcggaacatgtttaggtatcggtg  13929800                <-------MYC2                <-------MYC3                                   --------->GLK1(2)        --------->GLK1(2)                               --------->ARR11(3)                          -       <---------GLK1(2)                          --------->ANAC58                                 --   <------ZmHOX2a(2)   <---------ICU4   --------->TOE2(3)<------ZmHOX2a(2)                        <-- ------->ANAC58 ------->MYC3            <----------DOF2 <---------ARR11(3)  --------->MYB52(1)    --- ------->ANAC58 ------->MYC2         ------->TEIL --------->ANAC58    <------ZmHOX2a(2)      --------   caaggatcaaattctgcatatgcaaacattgcaatattgcatctttaacaacaagtaagatcaagaatatggatcacaaaacagaacagaacagggtgta  13929900      <------ZmHOX2a(2)      <---------ATHB12  --------->DEAR3(2)  --------->MYB46(3)                  --------->At4g35610 ------->TEIL                         <---------At4g35610    <---------DAG2 -------->MYB52(1)            ---------->CDC5           ------>ZmHOX2a(1) ----->GAMYB               <---------At4g35610     --------->At4g35610--------->ANAC46 -------MYB52(2)           --------->At4g35610     <---------At4g35610--------->ANAC58        ------- ------>MYB46(3)         <---------ZAT18          ----------->ARR10   --------->ANAC58 <---------ATHB12 ->ALFIN1                --------->ZAT18    ------>ZmHOX2a(1)<----------DOF2         --------->WOX13(1)   acgaaccgatcattttgccaacgagagtgagctcatcgctagcttcctcgatgagctcctcgactttaccacaagcaagtcgcttctcaatcactcccca  13930000                                       <---------At4g35610                                       --------->At4g35610                                      ------->TEIL                                   <---------ARR11(3)                               <---------ANAC58                                      --------->ARR14(2)                               <---------ANAC46                                      <---------ARR14(2)                              --------->ATERF1(1)                                    <---------GLK1(2)               <---------ALFIN1<---------ANAC58                                     <------ZmHOX2a(1)             <---------ALFIN1 <------NtERF2                                   --------->AtMYB61            --------->ARR14(2)--------->RAP2.3(1)                            --------->MYB46(3)          --------->LBD16    <---------ATERF1(1)                             <---------MYB55(2)         --------->HSFB2a(2) ------>NtERF2               <---------MYB52(1)<---------ARR14(2)        <---------LBD16     <---------DEAR3(1)          --------->LBD16   <------ZmHOX2a(1)      <---    <<<<<<<<<TBF1        <---------DEAR3(1)        <----------DOF2     <---------LBD16      <-------- -->LBD16<---------HSFB2a(2)--------->ALFIN1 <---------ALFIN1<---------ZAT6--------->ARR14(2)    <---   gtcttcttcttccggacacaccttgagacggtggcgcatgaagctccccactgctttccgctagtcttcatattcaggaaccaccaggattttcctttag  13930100                                                                             <-----------HVH21                                                                        <---------SPL7                                                                 <--------ATHB1                                                                 --------->ATHB51                                                                 <---------ICU4                                                                 --------->YAB1                   ---                                                                <---------ATHB51   --------->ANAC58 <                                                    --------->REM1(1)   ------>NtERF2             ---                                    <------ZmHOX2a(2)           <---------ATHB12   --------->ANAC58 -                            --------->TOE2(3)     <----------DOF2<------------ATHB5--------->ANAC46--                        ----------->HVH21       <---------At4g35610    ----------->HVH21         ---- ------ANAC58       --------->At4g35610      <---------At4g35610--------->ICU4<------ZmHOX2a(2) <---- --DOF2           --------->YAB1  ------->GAMYB --------->At4g35610    --------->DEAR3(1)   <-------- ------ANAC58  --------->WOX13(1)--------->MYB46(3) <---------ALFIN1   --------->ETT(2)     ---------   cgttttgctatcgaggtctatcagcactgacctcaacgatcccagtcgtctgcttcaccttcgccaataatggccgaccgatcacacgctggaacatctc  13930200            --------->CCA1(2)         ----------->ARR10       <---------MYB52(1)      ------>NtERF2     --------->DEAR3(1)     --------->RAP2.3(2)    --------->RAP2.3(1)    <------NtERF2   <------NtERF2   ------>NtERF2   <---------ATERF1(1)  --------->ANAC46  --------->ANAC58  <---------ALFIN1  <---------ATERF1(1)  --------->ANAC58       --------->LBD16 --------->MYB46(3)     <---------DEAR3(1)                                                          < --->NtERF2<---------GLK1(2)                                                                        - ---------ATERF1(1)    <---------LBD16                                                         ------ ------>LBD16 --------->ANAC58                                                                 <----- -------->SPL7--------->ANAC58                                                                 ------ ---->NtERF2--------->ARR14(1)                                          ---------->ID1         ------ ----->ANAC46<-------TEIL------>NtERF2      <----------DOF2    <-----------------AGL1          <----- -----LBD16--------->ARR11(1)              <---------DAG2    --------->WRKY38(1)               <----- -ARR11(3) --------->ARR14(2)         <---------ICU4      <---------ANAC58               <---------MYB59 >ARR11(3) <---------ARR14(2)        <---------ATHB51     <---------ANAC58    <---------ATHB12-------   cggcccgccgctagatacgcttctctccggcgaaatcaaattatgccttttcagattaatgcgttgtctattttggcccattcaatatgggcctaaatat  13930300                                                                                                    -       <----------DOF2                                                                              <   ------->GAMYB                                                                                    < -----------GT1                 <---------At4g35610                                    --------->GLK1(2) -------->MYB52(1)      ------>MYB46(1)                                 <---------ARR11(3)          < --->ARR11(3)           ------>MYB83                                    <---------ARR14(2)          < ----AHL20(2)           -------->P                                      --------->ARR14(2)          - --->AHL20(2)          <---------ALFIN1                                 --------->ARR11(3)         -- --->AHL20(1)         ------->GAMYB                              *TSS   --------->GLK1(2)          -- ----AHL20(1)         --------->MYB46(3)                   --------->TOE2(3)          <---------ARR11(3) ----ARR11(3)     <---------GLK1(1)    ---------->DOF2     <---------MYB59            --------->ARR11(3) -->AHL20(2)<----------DOF2     --------->At4g35610        --------->TOE1(3)    --------->CCA1(2)<---   attaacgggctttactttggataacccacccctaagcagagcaaagagtctaatcggaaaacctaaattctgaaaatctccgatatgagattttggacat  13930400            ----------->ARR10         ========================MYC_MYB         <----------CDC5        ------>NtERF2        --------->At4g35610        <---------At4g35610       --------->RAP2.3(2)       --------->DEAR3(1)      --------->DEAR4(2)      --------->RAP2.3(1)      <------NtERF2      --------->ATERF1(1)     --------->DREB2C(1)     <---------DREB2C(1)     <---------At4g35610     ------>NtERF2     <------NtERF2     <---------ATERF1(1)    --------->RAP2.3(2)    --------->RAP2.6(2)    <---------ATERF1(1)    <---------ATERF1(2)    --------->ATERF1(2)    <---------DEAR3(1)    --------->DEAR3(1)   --------->RAP2.3(1)   --------->SPL7   --------->ATERF1(1)   --------->ERF1  --------->ATERF1(1)  --------->At4g35610  ------>NtERF2  <------NtERF2  <---------At4g35610  <---------ATERF1(1)  <---------DREB2C(1)  --------->DREB2C(1) ------>NtERF2<---------GLK1(2)   --------->ANAC58 <---------ATERF1(1)              --------->ANAC58              --------->ZAT14 <---------SPL7                   <---------ANAC55(2)           <---------ZAT14 <---------ERF1        --------->TGA1a                          <---------ZAT18 <---------RAP2.3(1)   <---------O2                          <---------ANAC46 -------->ATERF1(2)    --------->O2                        --------->TGA1a ---------RAP2.6(2)    <---------ANAC46        <---------ARR11(3) ---------ATERF1(2)    --------->bZIP60(1)     --------->ARR11(3) ---------RAP2.3(2)    ===============================bZIP_DOF  --------->ZAT18 ---------DEAR3(1)     <---------TGA1a     ---------->DOF2 <---------O2 -------->DEAR3(1)   ------>NtERF2--------->ANAC46         --------->O2 ------->ATERF1(1)  --------->DEAR3(1)     ==========================bZIP_DOF ------->At4g35610  ----------->HVH21  <---------ZAT6      <---------TGA1a ------DEAR3(1)--------->GLK1(2)  --------->ANAC55(2) ------->TEIL            --------->DOF5.7(2)   cggcggccgccgctgagattctccgacgtgatgagcacgtagtgagaaagctcttgaaccctcgtgtgtactccaaactcgttaatgcattctctgaaac  13930500                                       <---------At4g35610                                       <---------ZAT2                                       --------->ZAT2                                       --------->At4g35610                                    ------>ZmHOX2a(1)                               <--------P                                   --------->TOE2(3)                               <---------MYB52(1)              =============================HOX2a_HOX2a                          <---------LBD16              ------>ZmHOX2a(2) <---------ARR14(2)                          <---------ATERF1(1)              ==================HOX2a_HOX2a                                --------->ZAT14             ==============================HOX2a_HOX2a               --------->ANAC58           <----             <------ZmHOX2a(2)  --------->ARR14(2)                   --------->ANAC46          <-----             ===================HOX2a_HOX2a                          --------->ANAC58 <---------At4g35610     ------>MYB46(1)      --------->ARR14(2)                       ---------->DOF2--------->LBD16     ------>MYB83         <---------ARR14(2)                       --------->MYB46(3) --------->At4g35610  ----------------->AGL3 <------ZmHOX2a(1)           <---------ARR14(2)    <---------ZAT18     <-----   tgaaaccaaattgagatcgctatgtgaggattcaaatcctcagctcaagaatgcggtttcagttttccaacaagcagtcgactccggtagctctcttgct  13930600                                   --------->HSFB2a(2)                                   <---------HSFC1(1)                                   <---------HSFB2a(2)                              --------->ANAC58                             <---------ANAC58                              --------->ANAC58                             <---------ANAC58    <------NtERF2            --------->SPL7                              <---------YAB1   --------->LBD16           <---------ZAT18                       --------->LBD16  --------->LBD16          <---------SPL7   --------->ANAC58      --------->ANAC46 <---------LBD16         <---------------AtSPL3                  <---------LBD16 ------DOF2              <---------------AtSPL8                 <---------At5g28300 ----ANAC58            <---------ZAT2       --------->ANAC58   <-----------GT1 ----ANAC58         ---------->DOF2--------->HSFC1(1)    <---------YAB1 <---------ARR11(3)  ---------   ttcgccggaaataatctcatggcaaagctggtacgctctagaaaccacgaactagcattttcattttaccgcaagatgcttgagactgatactttcatca  13930700  Previous    Next  AGI:  At4g28005.1    Description:  similar to NADH-ubiquinone oxidoreductase-related [Arabidopsis thaliana] (TAIR:AT5G52840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49517.1); contains domain NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT (PTHR12653) Range:  from: 13929661    to: 13930197    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g28010.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16865.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 13930365    to: 13933276    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version