Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            ------>ZmHOX2a(2)                                                                                         --------->CCA1(2)                                                                   --------->TOE1(3)     <------ZmHOX2a(2)                                                         --------->At4g35610            --------->AGP1  ------>ZmHOX2a(1)                                      <---------ZAT2          <---------YAB1  ----  --------->HSFC1(1)                                     --------->ZAT2        --------->YAB1 -------  <---------HSFB2a(2)                                    <---------At4g35610 <---------TOE2(3)<------  <---------HSFC1(1)                            <---------MYB52(1)<---------ANAC55(2)   --------->ARR11(3)  --------->HSFB2a(2)                         <---------------AGL15<---------MYB59      <---------ARR11(3) --TEIL              <---------ZAT6           --------------->AGL15--------->TOE2(3)    <---------AGP1   attcctagaaaaatcacaaacaagtgttaccatgaagtatgcaaatttctgttattagcagctgaattacctaaaaatcaaggataattagatctaagct  13917000                                                                        <---------YAB1                                                                      <---------ICU4                                                                      --------->YAB1                                                                      <--------HAHB4                                                                  --------->MYB46(3)                                                               ------->GAMYB                                                              --------->DEAR3(1)               <-----                                                              --------->MYB46(3)               ------                                                              <---------MYB55(2)               ------                                                              <---------MYB52(2)               <-----                                                             ------>MYB83                      ------                                                    <------ZmHOX2a(2)<---------YAB1            ------                   <-----------HVH21               --------->ARR11(3)<---------ATHB12         -------      <------ZmHOX2a(2)                            <---------ARR11(3)--------->ICU4         <--------     <---------ARR11(3)                     ---------->DOF2  ------>MYB46(1)               --------->ICU4     --------->ARR11(3)                <---------At4g35610  --------->MYB52(1)             <---------YAB1 ----->MYB52(1)  <------------AtMYB77  --------->At4g35610 --------->TOE2(2)          <------ZmHOX2a(1) -->At4g35610    --------->MYB46(3)    --------->ZAT2      --------->TOE1(2)  --------->ANAC58<------ ---At4g35610    --------->DEAR3(2)    <---------ZAT2     --------->MYB46(3)  --------->ANAC58<------   aacgagagatcaatatcaaaccgtcgcacacataaaaaaccagctcaaaagaagatcaaaaccaacgacccatcattatccagcaagaggaacataatta  13917100                                                                        ------>ZmHOX2a(2)                                                                      <---------ARR14(2)                                                                      --------->ARR11(3)                                                                      --------->ARR14(2)                                                                      --------->AGP1                                                                      <---------GLK1(2)                                                                      <---------ARR11(3)                                                                     <---------At4g35610                                                                     <---------GLK1(1)                                                                  <---------At4g35610                                                              ================HOX2a_HOX2a                                                              =================HOX2a_HOX2a                                                            --------->HSFC1(2)                                                            =====================HOX2a_HOX2a                                                            <---------HSFC1(2)                                                            --------->HSFB2a(1)                                                            ------>ZmHOX2a(2)                                                            <---------HSFB2a(1)                                                           <------ZmHOX2a(2)                                                           ======================HOX2a_HOX2a    ---------->DOF2                                       <---------ARR14(2)   --------->YAB1                                         --------->ARR14(2) ----AHL20(2)                                             <---------ARR11(3) -->ATHB1                                                 --------->ARR11(3) --->ATHB51                                              <------ZmHOX2a(1)------>ZmHOX2a(1) ----ICU4                                                ======================HOX2a_HOX2a --->ATHB12                                           =============HOX2a_HOX2a -->HAHB4                                   --------->REM1(1) ------>ZmHOX2a(1) -->ICU4                            --------->TOE2(2) <------ZmHOX2a(1)<------ZmHOX2a(2) --------->GLK1(2) -ICU4                              --------->TOE1(2) =========================HOX2a_HOX2a    <------ ---YAB1 ----------->GT1           ----------->RAV1(2)========================HOX2a_HOX2a--------->ARR14(2) ---ATHB51             ---------->DOF2 --------->ANAC46  =====================HOX2a_HOX2a<---------ARR14(2)   ttgaatcaaagttgataaatcgactaaaagaataggtacctgcgctacatgaagtaggaggatccttctgcagatccttcaattccttcaaaatccgttt  13917200                                                                       <---------At4g35610                                                                   <-----------HVH21                                                                  --------->YAB1                                                           ------>MYB46(1)                                                           ------>MYB83--------->At4g35610                      <------ZmHOX2a(2)                   --------->WOX13(1)                     --------->ARR14(2)                  --------->AtMYB61            ----------->GT1 ------>NtERF2    <---------TOE1(2)                    >>>>>>>>>MYB2 <-----------RAV1(2)     -------- ---MYB52(1)    --------->TOE1(2)            --------->ZAT14     <---------ATHB12    >>>>>>>>>TBF1   cgatgccatttccaaaatcccacgatccaaattccaattgaagactctgcaatcgaaaaccaatccaatggtcagatgaattaagaagaagaaaaacata  13917300                                       <---------ICU4                                            ----                                       --------->YAB1                                            <---                               <------ZmHOX2a(2)                                                 <---                               --------->CCA1(2)                                                 <---               ---------->DOF2--------->ARR14(2)                                                -----              <---------AHL20(2)     <---------ARR11(3)--------->ANAC55(2)                      <----        <---------AHL20(2)    <---------ARR14(2)     <-----------GT1                            <---- --------->LBD16              --------->ARR11(3)  <---------ARR14(2)                      ---------->DOF2 ->YAB1 --------->AHL20(2)    <---------ARR11(3)  --------->ARR14(2)                <------ZmHOX2a(1)   acccagaaaattatatataaagacgggaagaagatccaaaatcataactccgaattcacgtttttggttttggttcttcgaatttaggagaagaaagggt  13917400                                                               ----------->GT1                                                             <---------ANAC46                                                             <---------ANAC58                                              ------------>CBF----------->GT1                   <----    --------->ANAC58                         --------->AtMYB61--------->LBD16                   -----    --------->ANAC58                       ------>NtERF2     <---------ANAC58                   <---- ------->GT1                            <------NtERF2       <---------LBD16                     ----- ---MYB83                          <---------AtMYB61       --------->ALFIN1              <---------ZAT14 ------MYB46(3)                  <---------ANAC58        <---------ANAC58                <---------ZAT18 ---MYB46(1)                     <-----------RAV1(1)     <---------ANAC58         --------->ATHB12 ---->ALFIN1                     <---------ANAC58  <---------AHL20(2)        --------->MYB52(2)<----- -----DEAR3(1)            *TSS   <---------ANAC46 --------->AHL20(2) --------->GLK1(2)   --------->ZAT18 -----AtMYB61  >>>>>>>>>TBF1   <---------ANAC46   ----------->TBP<--------P <-------TEIL --------->ZAT14   ggtgaaacggaagagaagaagaagttgaaaatgttgtgtggtcgcgaccacaataaatagggtgcgggtaaattctggttcgtttgattagtggactctg  13917500                                                               ---------->CDC5                                                      <---------TCP16(2)     --------->ANAC58        <----------DOF2   --------->AHL20(2)          ----------->TCP11(1)   --------->ANAC58       < <----------DOF2     --------->MYB52(2)             --------->ALFIN1         --------->ANAC46       - <---------DAG2     <---------TOE1(2)             <---------ANAC58          ------>MYB46(1)        <- -----ZAT2    --------->ARR14(2)                  <---------ANAC58          --------->SPL7        <-- ---->At4g35610    <---------MYB52(1)    <---------DAG2<---------PCF2       ------>MYB83       <----- -----At4g35610 <-------TEIL  <---------AHL20(2)  <---------ANAC46        --------->TOE2(2) --------- ---->ZAT2    <---------GLK1(2)<---------ICU4    <---------MYB46(3)       --------->TOE1(2) --------- ------RAV1(1)<---------ARR14(2)         <----------DOF2 <---------MYB59------->TEIL   --------->AHL20(2)   ctgctttattctttcagattcgttcgttttaaataatgtcaaacttttttttgggtgggcctaactcagcgttgtacctacggcacatataaaataacgc  13917600                        <------NtERF2                        --------->ATERF1(1)                        --------->RAP2.3(1)                      --------->DEAR3(1)                      <---------ANAC46                      <---------PCF2                      <---------DEAR3(1)                     --------->ATERF1(1)                     --------->RAP2.3(1)                    <---------ATERF1(1)                 <-----------RAV1(1)                                                         <-------                 <---------O2                         <------NtERF2                          --------      <---------CCA1(2)------>NtERF2                <---------DEAR3(1)                       <------- ---------MYB46(3) <-----------RAV1(1)              --------->DEAR3(1)                      ------>NtERF2 -------->MYB55(2) --------->ALFIN1             --------->HSFC1(2)                      ----------->HVH21 -------P      <---------ICU4                   <---------HSFB2a(1)                    ------>ZmHOX2a(2) -----GAMYB --------->YAB1                      --------->HSFB2a(1)                    --------->DEAR3(2) ----LBD16  <---------ICU4                <-----------HVH21                       <---------TOE1(2) >MYB52(1) <---------YAB1--------->DEAR3(1)     <---------HSFC1(2)                <---------TOE2(2) ->DOF2  --------->YAB1<---------RAP2.3(1)--------->LBD16                 ---------->DOF2  <---------DEAR3(1)   ggttgttcgtatcatcatcatgtggcgccgatgttttccaatcccgtcgaagcgtcgtcgtttaagtggtttagtcaaaagtcgtatgatccgacggctg  13917700                       --------->ANAC55(2)                       --------->bZIP60(1)                       <---------ANAC55(2)                       --------->ANAC46                                     <------ZmHOX2a(1)                      ---------->ID1                                   <---------REM1(1)                      <---------TOE2(3)                             <---------MYB46(3)      <---------HSFB2a(2)                                         <-------GAMYB      --------->HSFB2a(2)                                 <---------WRKY18(1)    <---------ANAC46----------->HVH21    <---------At5g28300  --------->MYB52(1)                   <- --At4g35610    <--------HAHB4          <-----------GT1 <---------WOX13(1)<---------TOE2(3)        <- ->At4g35610    --------->ATHB12     ------->TEIL    <---------YAB1<--------P                 ------- --ZAT2        <---------ATHB12 <---------AtLEC2<----------DOF2  <---------MYB46(3)           <------   agagttttgtagaacgaatcatttgacgtaatttgaatgaatttaccatgctttcaagattgaccagcggttgatgaaggatgttttttttcaaaaacgt  13917800           --------->ATHB51           -------->ATHB1           <---------ICU4          --------->AHL20(2)          <---------ATHB51          --------->ICU4          <---------AHL20(2)      <------ZmHOX2a(1)                                                ----------->GT1             -- --------->ALFIN1                                                ----------->HVH21              ----- --------bZIP60(2)                  <-----------HVH21   <-------TEIL ---------->DOF2           <----- --------ANAC46           <---------At5g28300         <---------ARR14(2)                       <----- -->ANAC55(2)            <-----------GT1    ----------->HVH21 <---------AtMYB61       <------ZmHOX2a(1) ---ANAC55(2) <-----------GT1<-----------HVH21        --------->ARR14(2)    ---------->DOF2   <------   gatgtgtaggaaattattacattgtttttactgtcatatgtcatatgtgacaagacgattcgttttggtgacaaagtataaagatggaggatgaattaac  13917900  Previous    Next  AGI:  At4g27960.1    Description:  UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase. Identical to SUMO-conjugating enzyme UBC9 (UBC9) [Arabidopsis Thaliana] (GB:P35132;GB:Q42014;GB:Q8RXQ0;GB:Q9FPH9); similar to UBC10 (UBIQUITIN-CONJUGATING ENZYME 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.2); similar to UBC10 (UBIQUITIN-CONJUGATING ENZYME 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.1); similar to unknown [Populus trichocarpa] (GB:ABK94176.1); similar to ubiquitin-conjugating enzyme 8 [Capsicum annuum] (GB:AAR83891.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains Inte Range:  from: 13915826    to: 13917426    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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