Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->ALFIN1                                                                                       <---------DEAR3(2)                                                                                      <---------DEAR3(1)                                                                                      <---------ATERF1(2)                                                                                     <------NtERF2                                                                                     --------->ATERF1(1)                                                                                    <---------RAP2.3(1)                                                                                   <---------DEAR3(1)                                                                                   --------->DEAR3(1)                                                                                  --------->ATERF1(1)                                                                                --------->TGA1a                                                                                --------->bZIP60(1)                                                                                <---------O2                                                                                --------->O2                                                                                <---------TGA1a -----                                                                                --------->bZIP60(2)                                                                      ---------->DOF2<---------LBD16           <---------ARR14(2)                                       <------NtERF2<-----------HVH21           --------->ARR14(2)                                   <-----------HVH21<---------ATERF1(1)          <------NtERF2                                 --------->LBD16  --------->At4g35610    <----         --------->LBD16                              <---------LBD16 ====================bZIP_DOF         <------NtERF2                            ========================================bZIP_DOF        --------->RAP2.6(2)               --------->TOE2(3)  ------>ZmHOX2a(1)  <---------bZIP60(1)       <---------LBD16        ----------->GT1     <----------DOF2 <---------DEAR3(1)------>NtERF2 --------------AGL1   <----------DOF2   <---------TOE2(3)<---------MYB52(1)     <---------bZIP60(2)   ctggttttggccggaaacagagggcttttgaaccgtagaatcaacgttgattcttttccggtccttcgtcggagaagcagagacgtcgccggtggaagag  13910500                                                                                                    <                                                                                                   <-                                                                                                  <--                                                                                                 ----                                       --------->TGA1a                                          <----                                       --------->ANAC55(2)                                <------NtERF2                                       --------->ANAC55(1)                               <-----------TGA1                                       <---------ANAC55(2)                               <-----------HVH21                                       =============================================bZIP_DOF   ------                                       --------->bZIP60(2)                        --------->ATHB12---                                       --------->O2                     <---------ANAC46<---------bZIP60(1)                           --------->WOX13(1)                           <---------ANAC58<---------TGA2(1)                         <---------ATHB12                               <---------ANAC58--------->bZIP60(1)                       --------->WOX13(1)                           <-----------HVH21   --------->TGA2(1)                     <---------MYB52(1)<---------O2                --------->ANAC46     <---------ANAC58                    --------->TOE2(3)  <---------TGA1a             --------->O2 ------->TEIL   <-----                   ----------->GT1     --------->ANAC58           =================================== ---->At4g35610  ------>ZmHOX2a(2)     --------->ANAC58           ------>ZmHOX2a(1)     <---------ANAC46 -----At4g35610--------->ARR11(3) ----------->HVH21     <---------GLK1(2)<----------DOF2<---------ANAC58   ctgctaggctcgactctgatctcgttaatcaatctcttgacacgtcttcgagggaacagaaactcttcctcgtcgcttgatgaatcagtggcgtcacgat  13910600                                <---------MYB52(2)                          <------NtERF2 --------->ATHB12  ----------->RAV1(2) ---------MYB52(1) --------->ZAT2                                         <----------DOF2           - ----------HVH21  -------->P<-----------HVH21                           ------->TEIL                < -------ANAC55(2) ------>MYB46(1)                                     --------->ZAT18               < -->ZmHOX2a(2)  <---------MYB59 --------->ANAC58                      <---------ZAT18            <--- --ZmHOX2a(2)   --------->AtMYB61                                     --------->ZAT14  xxxxxxxxxxxxxx --->ARR14(2)  --------->MYB46(3)                                     <---------ZAT14------->GAMYB--- ------>ANAC55(2) ------>MYB83  --------->ANAC58              <---------DAG2   --------->YAB1-------- ----ARR14(2)  --------->DEAR3(2)               ------>ZmHOX2a(1)   --------------->AtSPL8   <------- ==HOX2a_HOX2a <---------MYB55(2)   --------->ZAT6            <----------DOF2 <---------YAB1 --------   ccgtcattgagacccgaaccaacctggccgagtcacgaacactggtcttcctctccatagacgactttttagtgtactttctgataacagtcttgtgctc  13910700     --------->ZAT14     <---------ZAT14  ------->TEIL -------->ZAT14                                 <---------YAB1 ---------ZAT14    <------ZmHOX2a(2)        --------->ANAC55(2) ---------ZAT18   <---------ARR11(3)        <---------ANAC55(2) ------ANAC46     --------->ARR11(3)   --------->YAB1 xxxxxx>smallRNA(se3)                  <---------ICU4                         ---------->DOF2 ------------>AtSPL8<-------TEIL      <---------YAB1              <---------ARR14(2)          ------- ->ZAT14          --------->AGP1 --------->WOX13(1)               --------->GLK1(2)       --------->GLK1(2) --ZAT14          --------->ARR14(2)--------->YAB1 <---------YAB1<---------GLK1(2)        <---------ARR14(2) ->ZAT18          <---------ARR14(2)<---------ICU4<---------AHL20(2)  ----------->GT1    <---------GLK1(2)   tgtgtacttcactggtctaagatccataaactcatccatcatcatcacctattattttaaacagagagattctggtgaaaaaaagaacagagattctggt  13910800                                         <---------AHL20(2)                                 ----------->GT1                                                -----                                <---------------AtSPL8             <---------TOE1(3) <-------TEIL                               --------->DAG2                    *TSS   ---------->DOF2         <----                              --------->DAG2                    <---------MYB52(1) --------->ARR14(2)                           <------ZmHOX2a(1)        ---------->DOF2<---------TOE2(3)--------->CCA1(2)                   ---------->DOF2      --------->AHL20(2)     <-------GAMYB       <---------ARR14(2) ---->GT1   --------->CCA1(2)---------->DOF2  ---------->DOF2 <---------ZAT6     ----------->ARR10   gaaaattttcagagatttggagaaagagaggaaaagggtatataaaatgaaagagaaagagagactgttaagtttaaagtgagaagattcagaagtcact  13910900                                  <---------------AGL15                                 ----------------->AG                                 ----------------->AGL1                                 <-----------------AGL3                                 ----------------->AGL3                                 <-----------------AGL1                                 <-----------------AG                                 <-----------------AGL2                    <----------DOF2                   <---------HSFB2a(1)              ----------->GT1                   ------>ZmHOX2a(2)               --------->DAG2                  <------ZmHOX2a(2)               ---------->DOF2          <---------AHL20(2)                 <-----------ARR10--------------->AGL15                 <---------AHL20(1)                 --------->ARR14(2)              <---------AHL20(2)     --------->ARR11(3)                 --------->ARR11(3)            ----------->TBP          --------->AHL20(1)                 <---------ARR14(2)      ----------->GT1              --------->AHL20(1)          ---         <----------DOF2    <----------DOF2  <-----------TBP          <---------AHL20(1)        <----         <---------DAG2<---------ANAC58  <------MYB83                 <---------AHL20(2) <----------DOF2      ===================HOX2a_HOX2a     <------MYB46(1)           --------->AHL20(2)   <---------ANAC58      ------>ZmHOX2a(1)<---------ANAC58 --------->MYB59            <---------AHL20(2)   <---------ANAC58      ====================HOX2a_HOX2a--------->ARR14(2)   <---------AHL20(2)        <----------DOF2 < ------>GT1      <---------ARR11(3)  <---------ARR14(2)  --------->AHL20(2)--------->AHL20(2)   <---- -----ZAT6      <------ZmHOX2a(1)----------------->AGL2  --------->ICU4 <---------ARR11(3)  <--------   gttaaatcctactttataggatctttcgggctttagccatatttggtatatataaagtaataaatagaataaaatatttttatattctttgcttttattt  13911000                                         <-----------HVH21                                      <---------ANAC58                                      <---------ANAC58                                    <---------At5g28300                          --------->ARR11(3)                          <---------ARR14(2)                          <---------ARR11(3)                                        ----------->HVH21   <-----------GT1        --------->ARR14(2)                                     ------>NtERF2 ------>ANAC55(2)        --------->CCA1(1)                                      --------->DEAR3(1) -----AHL20(2)   <----------DOF2   <-----------GT1   <-----------GT1         --------->ANAC46 ---------ICU4<-----------GT1   <----------DOF2     --------->ARR11(3)       <-----------GT1 -------GT1 <-----------GT1   ------>ZmHOX2a(1)     --------->AHL20(1)     <-----------GT1     ------ ----------------ANAC81  --------->RVE1(1)   <---------ANAC55(2)   <-----------GT1 <---------MYB46(2)   acttatttccattttttcacttttgaaatatcctcttttaccgtgtcacataaatatactgtatcagttttacatttttacaccgcctaacacattttaa  13911100                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                 <---                                                                                     <---------CCA1(1)                                                                                --------->ANAC55(2)--                                                                              <-----------GT1    ----                   <----------ID1                                        --------->ICU4         -----      --------->YAB1----------->RAV1(1)                             ----------->GT1  <---------RVE1(1)      --------->AHL20(2)  ---------->DOF2                          --------->DAG2   <---------ARR11(3) ---->DOF2  ----------->GT1                    <---------AHL20(2) ---------->DOF2   --------->ARR11(3)   agtgacaataaaaaatgtaaaacaacaaaaaagtctttgtaaaaactatattatttgtgaaacatataaaaagtaaaaatttacatgatattttggtagt  13911200        <---------TOE2(3)    --------->YAB1 ---------ICU4 -------->ATHB51 -------->ATHB12 --------YAB1                  <---------AHL20(2)                                   --------->TOE2(3) ------ICU4                <---------AHL20(2)            <------------------------ANAC81 ------->ICU4             <---------ARR11(3)            <------------------------ANAC81 ----->YAB1               --------->AHL20(1)          <----------DOF2         <-----------GT1 ---->ICU4                <---------AHL20(1)          <---------DAG2         <-----------GT1---------   cattattgataacgataagtagaaactatatattttaaaaattgttaagttatctacttttttttttttttttggtttttaaacattctcaattcgtcaa  13911300                                                                  --------->YAB1                                                                 <-------TEIL                                                             <------NtERF2                                                             ------>NtERF2                                                             --------->LBD16                                                            --------->DEAR3(1)                                                            --------->RAP2.3(2)                                                           --------->RAP2.3(1)                                                           <------NtERF2                                                           --------->ATERF1(1)                                                          ------>NtERF2                                                          <---------ATERF1(1)                                                         <---------DEAR3(1)                                                         --------->ANAC58             <---------bZIP60(1)                                                         --------->ANAC58             --------->bZIP60(1)                                                    --------->ANAC46                <---------ICU4                         <---------YAB1           --------->MYB52(1)    --------->ANAC58        --------->AHL20(2)                   <-----------GT1--------->RAP2.6(2)    --------->ICU4        --------->AHL20(1)            <---------ANAC46  --------->SPL7  --------->ANAC46        <---------AHL20(1)            ----------->GT1  <---------ATERF1(1)        <---------TOE1(2) >TOE2(3)       ----------->RAV1(1)  <------ZmHOX2a(1)----------->HVH21 --------->ANAC58   ----------   ttcgcagtgatatattagccacaaattttgatacagagaggagtgaattactaaacgggacgccgcattcatataagcaaatcgcatgatgacacctgta  13911400  Previous    Next  AGI:  At4g27950.1    Description:  CRF4 (CYTOKININ RESPONSE FACTOR 4); DNA binding / transcription factor. Identical to Ethylene-responsive transcription factor CYTOKININ RESPONSE FACTOR 4 (CRF4) [Arabidopsis Thaliana] (GB:Q9SUE3); similar to CRF3 (CYTOKININ RESPONSE FACTOR 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G53290.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74147.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471) Range:  from: 13909575    to: 13910865    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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