Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------ARR11(3)                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)                                                                                  <-----------ARR10                                                                                  --------->ARR11(3)                                                                                  <---------ARR11(1)                                                                              <------NtERF2       ------>ZmHOX2a(2)                                              <-----------RAV1(1)   --------->KAN4(1)                                                <----------DOF2   <---------KAN4(1)                                             <---------ARR11(3)  <---------KAN4(2)                                              --------->ARR14(2) ----LBD16                                                       <---------ARR14(2)            <----- ---AtLEC2                                                       <---------ARR11(1)  <----------DOF2 ---->RAV1(2)                                       <---------At4g35610     --------->ETT(1)   <----- ---ANAC46                       <----------DOF2    --------->At4g35610    --------->RAP2.6(3) <----- ---ANAC58                <----------DOF2         <---------ZAT18<-----------ARR10--------->GLK1(2) ---ANAC58                <---------DAG2    <----------DOF2     <---------CCA1(2)<---------CCA1(2)   ggagaatgatccaaactgaaacttgctgcttttctcttttactctgcttttgtgagctctcgttccaaatctttgttgtcggcaaatctttgttgtgact  13882800                                                                       ------>ZmHOX2a(2)                                                                      <------ZmHOX2a(2)                                                                      --------->CCA1(2)                                                                     <---------ARR14(3)                                                                     --------->GLK1(2)                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)                                                                     <---------AGP1                                                                     --------->ARR14(3)                                                                     <-----------ARR10                                                             --------->ATHB12                                                             -------->HAHB4                                                            --------->ICU4                                                          -------->HAHB4                                                          --------->YAB1          --------->YAB1                                         --------->YAB1   <---------ICU4        --------->AHL20(2)                      <---------------AGL15              --------->ICU4--------------->AtSPL8    <---------ZAT14   --------------->AGL15            --------->YAB1--------->ARR11(3)          ----    --------->ZAT14  =================================MADS_MADS      <---------ARR11(3)          <--- ----ANAC58          ----------------->AGL3         --------->YAB1 ----------->ARR10      --------->AHL20(2) ----ANAC46        --------->ARR14(2) <---------------AGL15 <---------YAB1    <----------DOF2  <----- ----ANAC58---------->DOF2  --------->HSFB2a(2)--------->YAB1<---------ICU4  <---------ANAC46 <------   tgtgagtgtagaagaaagtcgtttccacttgtagaataaactaaaataagcataacataataatgatggaagatctgtgccttttaataagtttaaatca  13882900                                                                               <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                               <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                            <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         --------->MYB46(3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                     <---------MYB59                                                                 <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            >>>>>>>>>>>>>>>>>LFY                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                    --------->ARR14(2) --------->MYB52(1)                    --------->HSFC1(2)            <xxxxxxxxxxxxxxxxxxsmallRNA(si3)        <----------ID1  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxsmallRNA(se3) ----->ICU4         <---------HSFB2a(1)      <--------P   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------YAB1         <---------HSFC1(2)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----ICU4           --------->HSFB2a(1)      xxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---ATHB12    ---------->DOF2          <xxxxxxxxxxxxxxxxxsmallRNA(fl3)------>ZmHOX2a(1)       *TSS   tttttaaaaaatgacaaaaagaaggttctaccgagaattgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatagaaccatttga  13883000                                                                     <---------ANAC46                                                               --------->SPL7                                                               ------->TEIL                                                               <-------TEIL                                                             --------->TOE2(2)                                                             <---------SPL7                                                            <---------ANAC58                                                            <---------ANAC55(1)                                                            --------->ANAC55(2)                                                            <---------ANAC55(2)                                                           --------------->AtSPL3                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                 <---------------AtSPL8                                             <---------RAP2.6(3)     <---------ANAC58                                             --------->LBD16<---------ANAC46                                             --------->At5g28300--------->ANAC55(2)                                       <---------ANAC58  <---------MYB52(1)        <---------ATHB12                                       <---------ANAC58 <-------GAMYB<---------ANAC58      --------->YAB1                                     <---------YAB1 ------------>MYB.PH3(1)       ------>MYB46(1)                                  <---------AHL20(2)------------>AtMYB77          ------>MYB83                               --------->AHL20(2)<---------------AtSPL3        ------------>CBF                               --------->AHL20(1)--------------->AtSPL3        --------->MYB46(3)                              <---------ICU4<---------ANAC46<---------ANAC58 <-----------GT1                 ----------->GT1<---------YAB1  ---------->DOF2<---------TOE2(2) --------->WOX13(1)      ------>ZmHOX2a(1)      --------->ICU4----------------->AGL1  --------->MYB52(1)   --------->MYB52(1)   tgacagtcctgatataaactagtatatactaaatattatatgcttgccgtaaaagtacggttacgtacgtagcgggtttgaaccaatcactaatggtaat  13883100                               <---------MYB52(1)                              <-----------HVH21                             --------->ANAC46                             ------->GAMYB                            --------->MYB46(3)                                                 <-----                           <---------At5g28300    ---------->DOF2 <---------At4g35610  ------>ZmHOX2a(2)                          <-----------GT1    XXXXXXXXXXXXXXXXXXXX>MIR159C       <---------ARR14(2)                   <---------TOE2(3)         XXXXXXXXXXXXXXXXXXXX>MIR159A       --------->ARR14(2) <-                --------->ARR11(3)           XXXXXXXXXXXXXXXXXXXX>MIR159B   <-------TEIL<----------DOF2               <---------At4g35610--------->At4g35610             --------->At4g35610--------->ARR11(3)  <---------ARR14(2)----------->GT1  <-------TEIL<---------AHL20(2) ----------->HVH21<---------ARR11(3)   agccaatcccaattggcagataatgttataaccgtcagattcaaattcgaattaaagggagccttggcatctgaacggttcagatttgatctttcttctt  13883200                                                  ------>MYB46(1)             --------->GLK1(2)                                                  ------>MYB83                --------->ARR14(2)                                                 --------->MYB52(1)          <---------ARR14(2)                                                --------->AtMYB61    <----------DOF2        ---------                                                --------->TOE1(2) --------->DEAR3(1)  <---------YAB1                                        ---------->DOF2       <---------ABI4(2)    ----------->TGA1                                     <------ZmHOX2a(2)      --------->DAG2   <---------GLK1(2) -----DOF2                          <---------ARR11(3)     ---------->DOF2   --------->ARR14(2)   --- ----------GT1               *TSS  --------->GLK1(1)  ----------->GT1<---------DAG2----------->HVH21   ttctctctctctctctctctctctctctcagtttcagagatcaaaagagaccaacgaagaaaaaagcaccgcttttgcagaatcggtgacgatagaaaga  13883300                                                 --------->LBD16                                                 --------->HSFB2a(2)                                                 <---------HSFB2a(2)                                                --------->LBD16                                               <---------LBD16 <---------CCA1(1)                               <---------At4g35610            <---------ARR11(3)           <---------                             <-----------RAV1(2)<---------LBD16<---------RVE1(1)       ------>ZmHOX2a(1) ->DOF2                    <-----------HVH21   ----------->RAV1(2)                    --------->TOE2(3) ------->DOF2      <-------GAMYB        <---------AHL20(2)    --------->ARR11(3)  <----------DOF2 <--   gaaagacagagagagagggagggttagagagtcaggggctatttgattcccctggaaaatttcagatatttgtttcttcatcttctttccttatttctct  13883400                                                          <------MYB83                                                          <------MYB46(1)                                                        <--------P                                                  --------->DAG2                                                 ---------->DOF2                                               --------------->AGL15                                               <---------------AGL15                                              <-----------------AGL2                                              ----------------->AGL3                                              ----------------->AG                                              ----------------->AGL1                                              ----------------->AGL2                                              <-----------------AGL3                                             --------->ANAC58                                           --------->GLK1(1)                                           --------->CCA1(2)                                          --------->ARR14(2)               <---------ARR14(2)         <---------ARR11(3)                            <---------YAB1               <---------GLK1(2)          --------->ARR11(3)     ---------->DOF2     <----------DOF2  ---------->ID1      <---------SPL7      <---------ARR14(2)  --------->ANAC58      <---------ANAC58 --GT1   <-----------GT1     <---------ATHB12--------->ANAC58 --------->ANAC58      <---------ANAC58 --------DOF2  --------->ARR14(2)     ---------->DOF2--------->ALFIN1       <---------AHL20(2)   ----   ctttctcgtttttaccagatttgtcttacgaatcaattctcaaagatacccaaaagtggtagggaagcaaagtactgttttattttgcttttgattctat  13883500               ---------->DOF2          ---------->DOF2         ----------->HVH21        <---------YAB1        --------->At5g28300     --------->YAB1                              <---------AHL20(2)      <---------DEAR3(1)       <---------YAB1                             <---------RVE1(1)     --------->At4g35610    <---------AHL20(2)                           <---------GLK1(2)     <---------At4g35610<---------AHL20(2)       --------->GLK1(2)       --------->ARR11(3) ----->YAB1---------->DOF2  <---------YAB1      <---------GLK1(2)        <---------ARR11(3)   <------   caaaatcagcggtgaaagaaaggaattttttttattatcagagaaagagagattcttgataatcgaatagacctagatttttttttgaatttagggcttt  13883600                                                                        <-------TEIL                                                           <---------ANAC46       --------->YAB1    <                                                          <---------LBD16--------->WOX13(1)       ---                                                <---------ANAC58       <------ZmHOX2a(2)         <---                                                <---------ANAC58      <---------ARR11(3)        -----                    <---------TOE2(3)         --------->ALFIN1        --------->AGP1            -----                <---------ANAC58            <---------ANAC46          --------->ARR11(3)      -------                <---------ANAC58            <---------ANAC58         --------->GLK1(1)      ------>NtERF2 ----DOF2      --------->ATHB12             <---------ANAC58--------->LBD16 --------->YAB1 --------->RAP2.6(2)   tttgatttttgagaaattgattgtggtaatggagacagatagtatggagtgcgtctcatctacgggtaatgagatccatcagaatggtaatggccaccaa  13883700  Previous    Next  AGI:  At4g27870.1    Description:  integral membrane family protein. similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G27860.1); similar to Os06g0103800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056545.1); similar to integral membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67955.1); contains InterPro domain Protein of unknown function DUF125, transmembrane (InterPro:IPR008217) Range:  from: 13878929    to: 13882888    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g27875.1    Description:  pre-tRNA. tRNA-Gln (anticodon: CTG) Range:  from: 13882923    to: 13882994    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g27880.1    Description:  seven in absentia (SINA) family protein. Identical to E3 ubiquitin-protein ligase SINAT4 (SINAT4) [Arabidopsis Thaliana] (GB:Q9STN8); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT3G61790.1); similar to unknown [Populus trichocarpa] (GB:ABK94975.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain TRAF-typ Range:  from: 13883229    to: 13885058    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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