Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    -                                                                                                  <--                  --------->ATHB12                                                                ---                 --------->ICU4                                                       <---------GLK1(1)            --------->ANAC58             --------->ARR11(3)                           --------->GLK1(1)            --------->ANAC46             <---------ARR11(3)                  --------->DAG2    <-----            --------->ANAC58         <---------AHL20(2)                     ---------->DOF2    <----- <---------------AGL15              --------->AHL20(2)      <----------DOF2 ========================= --------------->AGL15     --------->ALFIN1             <-----------GT1     =========================   atgctcatttgagcaagcaatgtttggaagtgggactatttaatatcatgtatgagttttatcttttgttataagaaaaaaagttgggatttcattttcg  13847200         ------->MYC3         <-------MYC3        --------->ANAC46        <---------ANAC55(2)        <---------ANAC46        <---------O2        <---------TGA1a        --------->ANAC55(2)        --------->TGA1a        --------->O2    <-----------HVH21   --------->O2   --------->TGA1a                                                             <---------SPL7   --------->bZIP60(2)                                                        <---------ANAC58   --------->ANAC46                                                           <---------ANAC46 <---------ALFIN1                                                             <---------ANAC58 ---------ZAT18                                                             <-----------HVH21      -- -------->ZAT18                                                          <---------ANAC46          <- -------ZAT18                                                            <---------ANAC55(1)      <-- ------>PCF2                                                             <---------ANAC58--------->ANAC58 ----ANAC58  ------->TEIL                <---------MYB59                 <---------ANAC55(2)    ----- ----ANAC58 <---------CCA1(2)            <---------DAG2                  --------->ANAC55(2) <------- ============bZIP_DOF                    --------->TOE2(3)             <-----------GT1--------->WRKY18(1) =================bZIP_DOF           --------->ETT(2)       <-------TEIL <---------ANAC58--------->ANAC58   tgcccacttcacgtgaatctaatgccttcaagtttgtggtctaccttattttctcttatggatacatgtcaatttacgtgtcgtatgagtcaagccttta  13847300                                                                                           <---------ANAC58                                                                                           --------->ANAC55(2)                          <---------GLK1(2)                                                <---------ANAC55(1)                       <---------HSFB2a(2)                                                 <---------ANAC46       <---------ALFIN1--------->HSFB2a(2)                                                 <---------ANAC55(2) ------->YAB1   --------->ANAC46                                                           <---------ANAC58 --------ICU4   --------->ANAC58                                                         <-----------GT1 -------ATHB12  --------->ANAC58                  ----------->RAV1(1)               <---------DAG2 ---->YAB1     ------->TEIL                       --------->AtMYB61           --------->TOE2(3) ---DOF2    --------->AtLEC2                     --------->ANAC46  <---------YAB1   <----------DOF2--   atcatcccaacaccatgcacgtcttctagatttgttttcgaccacgattccaccacaaaatttgacattgttattgaattcattaacttttttacgtgtt  13847400                                                                                                 <---                                                                                                 <---                                                                                                -----                        <------MYB46(1)                  <---------O2                           -----              <---------AHL20(2)                         --------->O2                           <----             --------->AHL20(2)                          --------->ANAC46                       -----          --------->AHL20(2)                        --------->REM1(1)                           <----          <---------AHL20(2)---------->DOF2        <-------TEIL                                 <----      --------->ICU4<-----------RAV1(1)            --------->SPL7                           ------>ZmHOX2a(2)      --------->AHL20(2)<------MYB83           <---------------AtSPL8  ------------>CBF    --------->At4g35610 --------->GT1--------->AHL20(2)       ---------->DOF2 <---------ALFIN1--------->LBD16     <---------At4g35610   attgtgaaatatttatttaattttgttggtaaaaggagcaaaaaagattagggtacaacacgtcgacttcttccccaattagacccatatgtgatctgtc  13847500        <------NtERF2       ------>NtERF2   --------->O2   <---------O2   ======================================bZIP_DOF   <---------TGA1a   --------->TGA1a --------TGA1 --------HVH21                                          ---------->DOF2                             < ---->ETT(2)                                           *TSS                   ---------->DOF2       < ---->bZIP60(1)               <----------DOF2        --------->AHL20(2)     ------->GAMYB          -- -----ETT(2)              <---------ANAC58         --------->TOE2(3)  --------->ANAC46     <--------- ---->TGA2(1)             <---------ANAC58       --------->AHL20(2)  --------->RAP2.3(3)   <---------DAG2 -----TGA2(1)             <---------ANAC46  ------>ZmHOX2a(2)      ------->GAMYB   --------->ARR14(2) -----bZIP60(1)          ---------->ID1     ------------>CBF    ---------->DOF2--------->DAG2      <-   gtcactcgtcgccaagtttttttatgtgtcgtcttttaaactttgatccaattcattaaaaagtcttaacgcccacaacgaaaaggaacttctctttttg  13847600                                                              <---------ANAC58                                                              <---------ANAC58                                                       ------>ZmHOX2a(2)                                                       ===================================HOX2a_HOX2a                                      <---------DAG2  <------ZmHOX2a(2) ------MYB46(1)                       <----------DOF2 ====================================HOX2a_HOX2a ------MYB83                      ---------->ID1     <---------ARR14(2)                       ------- ------->MYB46(2)               <---------MYB46(3)   <---------ARR11(3)   <<<<<<<<<TBF1--------->O2 -DOF2                         --------------->AtSPL8--------->ARR14(2)<<<<<<<<<TBF1  ------>ZmHOX2a(1) --------MYB46(3)     ----------->RAV1(1)   ---------->ID1<---------MYB52(1)       ------>ZmHOX2a(1)   tttggtgactgaatcggtggaaaacaacacaagtttgttcctttttgtctctccagatcccttggcttccttcttcttcttcatcctcctcgtgagactc  13847700                                   <------MYB46(1)                                   <---------MYB46(3)                                  <---------AtMYB61                                 <---------MYB52(1)                                <-------GAMYB                               <---------DEAR3(1)                          --------->MYB52(1)                         <---------ICU4                                             <---------WOX13(1)                         --------->ATHB51                                 --------->ICU4                         -------->HAHB4                             <---------HSFB2a(2)                        --------->ICU4                              --------->HSFB2a(2)                     --------->AHL20(2)  ---------->ID1       <---------ANAC58    --------->ATHB12                     <---------AHL20(2) <-----------GT1       <---------ANAC58    <---------MYB46(3) -->GLK1(2)          <---------YAB1<------MYB83      --------->GLK1(2)    <---------ATHB51   tgtgttgaaatttctctagggttttaattatcggcgttggtttttcgtttttgagaatttgatttcgtttttagaaataatgggtgattgggctcaactt  13847800                                                                ----------->GT1                                                            <-----------TGA1                                                            <-----------HVH21              <---------TOE2(2)                         ------>ZmHOX2a(2)                     <------              <---------TOE1(2)                   ------>ZmHOX2a(2)            --------->GLK1(2)             ------>ZmHOX2a(1)                  --------->ARR11(3)   ---------->DOF2          <------            --------->TOE2(2)               <---------At4g35610 <---------ANAC55(2)          --------            --------->TOE1(2)               <---------ZAT2<---------------------WRI1         --------           ------>ZmHOX2a(2)                --------->At4g35610 <---------ANAC46---------------------   gctcagtctgtgatcctaggtttgattttctcttaccttctcgctaagctgatctcgatcgtcgtcacgtttaaagaagacaatctctctcttactcgtc  13847900                                               --------->bZIP60(1)                                               <---------TGA1a                                     <-                                               --------->TGA1a                              <--------                                               <---------O2                  <---------MYB46(3)    <-                                               --------->O2                 --------->ALFIN1<--------                                               <---------bZIP60(2)    <---------ARR14(2)--------->ARR14(1)                                               <---------bZIP60(1)  --------->ABI4(2)  <---------ARR14(2)                                               --------->bZIP60(2)  --------->MYB55(2) --------->ARR14(2)     <------ZmHOX2a(1)               --------->WRKY12               <---------MYB46(3) <---------GLK1(2) --------->LBD16                     --------->WRKY38(1)           <---------AtMYB61  <------NtERF2<- -----HVH21                        --------->At4g35610             --------->ALFIN1 <---------ANAC46- -----TGA1                       <------ZmHOX2a(1)     --------->ARR14(2)   <---------DEAR3(1)======= ->bZIP60(2)                --------->LBD16 ----------->HVH21   <---------ANAC46   <---------LBD16 <- ->ANAC46                 <---------LBD16 --------->ANAC58     <---------LBD16    <---------ANAC46<-- -->TaNAC69(2)        --------->AHL20(2)  --------->ANAC58 ------>ZmHOX2a(1)<---------AtMYB61 <------   acccagaggagtctcaattggaaattaaaccggaaggagttgactcgcgacgtctcgattcctcttgcggtggtttcggtggtgaggcggattcgcttgt  13848000                                       <---------ETT(2)                                       --------->ETT(2)                                       --------->TGA2(1)           --------->ZAT2              <---------bZIP60(1)           <---------ZAT2              --------->bZIP60(1)                         <---------ARR14(2)           <---------At4g35610      ----------->TGA1                            --------->ANAC58    <-----------RAV1(2)             ----------->HVH21                           --------->ANAC55(2)   --------->ZAT2                <---------DREB2C(2)                            <---------ANAC55(2)   <---------ZAT2                --------->ATERF1(2)                            --------->ANAC46 <------NtERF2                   <---------DEAR3(1)                             --------->ANAC55(1) --------->ATERF1(1)             <---------ATERF1(2)                            --------->ANAC58 --------DEAR3(1)               <---------ANAC58                             --------->ZAT14 -ANAC58   --------->At4g35610  <---------LBD16                      <---------DEAR3(1) --------ANAC58                 <---------ANAC46                     <---------ANAC46 -ANAC58 <--------P        <---------ANAC58                         ---------------------->TaNAC69(1) --------ANAC46            <---------ANAC58                 <---------WOX13(1) <---------LBD16 -------->LBD16      ----------->HVH21 <---------TGA2(1)  --------->ATHB12   --------->ZAT18 ===============RAV  <---------ZAT6<-----------HVH21     <---------YAB1      <---------ZAT14 --------ANAC58 --------->LBD16 <---------ANAC58    <---------At4g35610  --------->HSFB2a(2)    <---- -------LBD16  --------->HSFB2a(2)--------->LBD16<------ZmHOX2a(1) ----------------------->TaNAC69(2) -----RAV1(1)  <---------HSFB2a(2)<---------At4g35610    --------->ICU4<------NtERF2--------->GLK1(1)   ggcggagcagggtagctcccgaagtgatagcgttgccggtgacgacagtgaggaagatgatgattgggaaggcgtcgagagcacggaactcgatgaggct  13848100  Previous    Next  AGI:  At4g27765.1    Description:  MIR828a; miRNA Range:  from: 13846977    to: 13847167    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g27780.1    Description:  ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2). similar to ACBP1 (ACYL-COA BINDING PROTEIN) [Arabidopsis thaliana] (TAIR:AT5G53470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48627.1); contains InterPro domain FERM/acyl-CoA-binding protein, 3-helical bundle; (InterPro:IPR014352); contains InterPro domain Acyl-CoA-binding protein, ACBP; (InterPro:IPR000582); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 13847555    to: 13849893    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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