Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------ZAT2                                                                                   <---------At4g35610                                                             <---------GLK1(2)     --------->ZAT2                                                             >>>>>>>>>ARR1         --------->At4g35610                                                             >>>>>>>>>ARR2        <---------AGP1                                                           <---------YAB1    <------MYB83                                                           ----------->ARR10 <------MYB46(1)         <---------YAB1                                    <---------TOE2(3)<---------AtMYB61    <---------At4g35610                            ---------->DOF2        --------->ARR14(2)    <---------ZAT2                           --------->ARR14(2)           <---------ARR14(2)     <---  --------->ZAT18--------->MYB52(1)          <---------ARR14(2)          <------ZmHOX2a(1)    ------- --GLK1(1)      ----------->HVH21        <-------TEIL--------->DAG2      --------->ATHB12<------ZmHOX2a(1)   cgagcgagcttatgagacctcacagaagtacaaggagggcaagttcatattcgaaaaggctaagattgtcaaggaggattggtagagctgaggaacatga  13841300                                                                      --------->ANAC46                                                                    --------->At4g35610                                                                  <---------ICU4      --------->ATHB12                                            --------->YAB1      --------->ATHB51               <---------AHL20(2)          <---------YAB1          --------->ATHB12      <---------ICU4                --------->AHL20(2)      --------->ANAC58        <---------ARR11(3)     --------->ICU4               >>>>>>>>>GATA-1           --------->ANAC46        --------->ARR14(2)     <---------YAB1         ------->TEIL                    --------->ANAC58        <---------ARR14(2) ------YAB1              ----------->GT1      <----------DOF2    --------->ICU4<-----------GT1 -->ICU4     <---------WOX13(1) ----------->GT1         <-----------GT1       <-----------GT1   tgaattcattattggattggctcaaaaatgtatatagataaaatttggctttgtgatttcacaagtcatcatcagccatttttccagttcttcattgtct  13841400                                                                                    <---------GLK1(2)                                                                                    <---------ANAC58                    <---------CCA1(2)                                      ----------->GT1                  <---------ANAC58                                        --------->ARR11(3)             <---------ICU4                                               <---------ARR11(3)            --------->ICU4                                            --------->YAB1<---------ANAC58     ------->TEIL <---------ANAC58                                    ---------->DOF2             <xx   ctctctgtatgttaattatgtcgtctcttgtgttcaaactatggatttgttcgaacaaggtttctctgttaataaagatgttaatagcttctcttgtgtt  13841500                      ----------->GT1              <----------DOF2           ------>MYB46(1)           ------>MYB83        <---------HSFB2a(1)        <---------HSFC1(2)                                                                     <-----        --------->HSFB2a(1)                              <---------ANAC58                --------->ARR11(3)        --------->HSFC1(2)                <----------DOF2<---------ANAC46                <---------ARR11(3)      <---------GLK1(2)         ------->TEIL             <---------ANAC58        ---------->DOF2 xxxxxxxxxxxxxxsmallRNA(i)   <---------YAB1     <----------DOF2  <---------ARR11(3)  ---------->DOF2   tcgcctcagaaccttcctttgtaagtgtaatatgaatctccatactttgtctttgagtagcttggaagataacttactagggaaaaagaaaggtctgccg  13841600                     <---------DAG2                     <----------DOF2               --------->ALFIN1             <---------ANAC55(2)                           <------NtERF2             <---------ANAC58                             ------------>CBF             --------->ANAC55(2)                        ---------->ID1                         ------             <---------ANAC46                 <---------MYB46(3)    <---------YAB1            *TSS        --------->ZAT6   <---------YAB1    <---------MYB46(3) <---------ATHB12           ----------->GT1 ----ANAC46  <---------ANAC58    ---------->DOF2---------->ID1--------->ICU4    <------ZmHOX2a(1)   tttaaaatttagactacgtgctgctttatgtttaccaaagctaagtggttgtcgttttggcgcaataaatgtgattaccagaggagagggagagagaaaa  13841700                                                        <---------ANAC46                                                      ------->GAMYB                                                     --------->DEAR3(1)                                                    >>>>>>>>>MYB2                                                 --------->At4g35610                                                 <---------At4g35610                                             <-----------HVH21                                            --------->ANAC58                                            --------->ANAC58                                            --------->bZIP60(2)                                     -                                            <------NtERF2     --------->ARR14(2)                    -                                           ------>NtERF2--------->DEAR3(1)                          <                                          <---------ANAC58    <---------ARR14(2)                    -                                          <---------ANAC58    --------->GLK1(2)                    <-                            <---------ARR14(2)  --------->ANAC58    --------->YAB1--------->LBD16 <--              ------->TEIL  --------->ARR14(2)  --------->ANAC58 --------->WOX13(1)              <---              <---------ARR14(2)          <---------ANAC46<------NtERF2 --------->GLK1(2)       <----              --------->ARR14(2)       --------->ALFIN1<---------LBD16 <---------GLK1(2)        <---- --->MYB52(1)<---------CCA1(2)         <---------DEAR3(1)--------->LBD16--------->ARR14(2)--------->GLK1(2)   cggagcgagagagatgtatctgaagagaccgatatggagcgatggcgcgtcagcaacgccggagaatccatcagaatcggagaccggagaagaatcagac  13841800   <------NtERF2  ------>NtERF2 --------->DEAR3(1) <---------ANAC46 <---------DEAR3(1) ----->NtERF2 -------->ATERF1(1)                                          ----------->HVH21                     -- ------NtERF2                                              <---------At4g35610                     <- -------->RAP2.3(1)                                        <---------ZAT2                         <-- --------ATERF1(1)                                         --------->ZAT2                     <------ -------DEAR3(1)                                           --------->At4g35610         --------->ANAC55(2) ------LBD16           ----------->GT1                 --------->ANAC46                <---------ANAC55(2) -----O2               --------->At4g35610        <---------ZAT14            <------ZmHOX2a(1)<------ -----TGA1a        --------->ARR11(3)            <----------DOF2--------->ZAT6         --------->ANAC46   gcggcgtcgatggtagtcgaagagctggtgacttctctcaatacacagagactttacagggagctgacactatccctcaggaccggtttacgcgatgctt  13841900                                    ------>ZmHOX2a(2)                                   <<<<<<<<<GATA-4                                   <---------GLK1(1)                                   <<<<<<<<<GATA-2                                   <------ZmHOX2a(2)                                   <<<<<<<<<GATA-3                                   <<<<<<<<<GATA-1                                  <---------ARR11(3)                                  <---------AGP1                                  --------->ARR11(3)                                 <---------CCA1(2)                        --------->LBD16                                        <---------ICU4           ------>ZmHOX2a(1)  --------------------->WRI1                       -------->ATHB1       <-----------GT1 <---------ANAC58                                        --------->ATHB12 ------->At4g35610     <---------ANAC58                                   <-------TEIL --------At4g35610  --------->ARR14(2)                        <---------At4g35610    <---------CCA1(2) -------ANAC46      <---------ARR14(2)                     <-----------HVH21--------->WOX13(1)     -- ---ANAC58 ===============================HOX2a_HOX2a     <-----------RAV1(1)  --------->YAB1      -- ---ANAC58 ================================HOX2a_HOX2a   <------------AtMYB77 <---------ATHB12 ------   gcgctgaattctccttccttcgcatccgtggtcttagatctcttctcaaaactctccgaactgtcgctgattcagattcaatcattcgtctcttctctca  13842000                              --------->ARR11(3)                              <---------ARR11(3)                             <---------CCA1(2)                      --------->TGA1a                                                             <--                      --------->O2                                                               <---                      ======================bZIP_DOF                                          -------                ==================================HOX2a_HOX2a                                 <------                ------>ZmHOX2a(2)          <---------YAB1                                     -------               --------->GLK1(1)           ------>ZmHOX2a(1)                                  <------              --------->ARR14(2)          --------->TOE2(3)                                   -------              <---------ARR14(2)       <-----------GT1                                        <------         <---------ARR14(2)  <---------GLK1(1)    <---------ANAC58                            <------ ------->ANAC58===================================HOX2a_HOX2a                         <---------YAB1 ------->ANAC58<------ZmHOX2a(2) <----------DOF2  <---------ANAC58               <---------At4g35610 --->YAB1--------->ARR14(2)  --------->GLK1(1)   ---------->ID1    <---------ANAC46   --------->ICU4   tacccaaaccatttccgatctccaacgtctgatatctttattttcctcattgtcgttctcaaatcgatgctgtgtaatgtgttatctgatgatggaagct  13842100      <---------ANAC58      <---------ANAC58      <---------ANAC46                                              <---------ZAT2              ----- -------ANAC46         <---------DAG2                            <---------ANAC58             <------NtERF2 ----TEIL              <----------DOF2                        ----------->HVH21             --------- -->HSFC1(2)         --------->ABI4(2)                     --------->DAG2                   --------- ---HSFB2a(1)      <---------MYB52(1)                     ---------->DOF2                --------->ALFIN1 -->HSFB2a(1)     --------->LBD16                     <---------YAB1--------->ZAT2      --------->ZAT14 ---HSFC1(2)    <---------LBD16                     ==============================HOX2a_HOX2a<------- -->At4g35610 <---------ARR14(2)        ---------->DOF2--------->YAB1                   <---------ZAT14 ---ZAT2    <---------MYB46(3)     --------->ATHB12 <------ZmHOX2a(1)      <------ZmHOX2a(2)<-------- ---At4g35610 --------->ARR14(2)  <-------TEIL--------->At4g35610<---------ANAC58      --------->ALFIN1   tcgtgatttcgtagtggttccggtgctttttcaacattcattgaaagaagcggaggatgataaagtgacgagcttggatcatatattcagtgtggagccg  13842200  Previous    Next  AGI:  At4g27745.1    Description:  Identical to Protein yippee-like At4g27745 [Arabidopsis Thaliana] (GB:Q9T096;GB:Q2V3E1); similar to yippee family protein [Arabidopsis thaliana] (TAIR:AT5G53940.1); similar to Yippee-like protein At4g27740, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA98518.1); similar to Os12g0484700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066778.1); contains domain PTHR13847 (PTHR13847) Range:  from: 13840370    to: 13841495    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g27750.1    Description:  ISI1 (IMPAIRED SUCROSE INDUCTION 1); binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO48616.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024) Range:  from: 13841694    to: 13843639    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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