Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      ------->GAMYB                                   --------->AtMYB61                   <---------MYB52(1)   --------->TOE1(3)                  --------->At5g28300   --------->TOE2(3)                  <-------GAMYB    <---------MYB111(2)                  <---------RAP2.6(3)-------->P                       <------ZmHOX2a(1)                 <---------MYB46(3)<---------MYB111(1)               ----------->GT1               --                 ----------->GT1   --------->MYB46(3)           --------->YAB1        --------->TOE2(3)                <------NtERF2      <---------MYB52(2)          <---------ATHB12      <---------ANAC55(2)  <---------AHL20(2)       --------->GLK1(1)                 --------->WOX13(1)    --------->AHL20(2) ------MYB52(1)------>NtERF2       <---------MYB55(2)     --------->YAB1       <------ZmHOX2a(1)----- >P  <-----------GT1       <---------GLK1(1)          --------->MYB46(3)     <---------TOE2(3)  <----   ttatttttttcgataggggccgttaatcgatatcccaacaacccttaatgaacacaacaatcgcaatcagaaggagaataaggaattacataaatccgag  13788000                                                ----------------->AGL3                                               --------->ANAC58        <---------ARR11(3)                     --------->ANAC58        --------->ARR11(3)                  --------->HSFC1(2)        <---------GLK1(2)                   --------->MYB46(3)              <----------DOF2     ----- --------->GT1                             --------->ANAC58            <------ZmHOX2a(1)        <---- ---->ZAT2                                 --------->ANAC58   ----------->GT1                  ------ -----ZAT2            --------->YAB1   <---------------------WRI1  ---------->DOF2    --------->TOE2(3)   ctcgaaaatagattttccgacgaatcaaaaatcagtgagcgagcgaagcacccaaaaacagggagagtataaaggactctttaaaaaacctcatagacag  13788100                                                                                        --------->ZAT2                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                        <---------ZAT2                                                                                   ------>ZmHOX2a(1)                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                              <------MYB46(1)                                                                              <------MYB83                                                                              <---------MYB46(3)                                                                             <---------AtMYB61                                       ----------->GT1                       --------->ALFIN1      --         <----------DOF2           --------->ANAC58                        <---------ANAC58      ---- ---->At4g35610                    --------->ANAC58                        <---------ANAC58  -------- -----At4g35610                  --------->LBD16       <----------DOF2    --------->MYB55(2) -------- ----->RAV1(1)           <-----------GT1        <-----------GT1           <---------MYB46(3) <-------   cagaaaatgggcattagggctccatagtttccctcccgagccagaaaatttctcccgcttgagtttcaatgtttgatgggtggtccttgcagcttcgaga  13788200                                      <---------ARR14(2)                                      --------->ARR14(2)                                      <---------GLK1(2)                                    ----------->ARR10                                  --------->REM1(2)                                --------->LBD16                               --------->ANAC55(2)                               <---------ANAC58                               <---------ANAC58                                      <------ZmHOX2a(1)                               <---------ANAC46                     --------->At5g28300                               <---------ANAC55(1)           --------->CCA1(2) --------->LBD16 --------->GT1                 <---------ANAC55(2)        <---------YAB1      --------->LBD16 ----->GLK1(2)              --------->GLK1(2)        ------>NtERF2 ----------->GT1 --------->ALFIN1 ->HSFC1(1)                 <---------ARR14(2)      ----------->HVH21         <---------LBD16     --- ->HSFB2a(2)                --------->ARR14(2)      --------->DEAR3(1)      <---------LBD16    ------ --HSFB2a(2)             <---------YAB1       <---------GLK1(2)<---------YAB1<---------LBD16   ------   atcgaaaaaaatcgctgagagagaaatacgattccgtgaagaatcgcagagtctccgacgatgatatgactgtaaaacccccggggaggagagagagaag  13788300                                   ------------>AtMYB77                                   <---------ALFIN1                                  ----------->HVH21                                <------NtERF2<---------ZAT2                                --------->ATERF1(1)                               <---------ATERF1(1)                               <---------RAP2.3(1)                               ------>NtERF2 --------->At4g35610                              --------->DEAR3(1)                              <---------DEAR3(1)                             <------NtERF2   <---------At4g35610                             --------->ATERF1(1)                             --------->RAP2.3(1)                                                   --                            <---------ATERF1(1)                                        <---------AHL20(2)                            <---------RRTF1(1)                                    <---------AHL20(2)                            <---------DEAR4(2)                                    --------->AHL20(2)                            <---------ORA47(2)          *TSS             <---------MYB52(1) ---------     <---------ANAC46       <---------RAP2.3(1)     <---------MYB46(3)  --------->At5g28300 <--------  --------->ALFIN1         <---------RAP2.3(3)     <---------MYB52(1)  ----------->GT1 --------->AHL20(2) ------->DOF2              <---------RAP2.3(2)    <-------GAMYB        <---------ZAT6<---------YAB1-- --->ANAC58                <---------DEAR3(1)--------->ZAT2       >>>>>>>>>>>>>>>>>LFY--------->YAB1 --->ANAC58              --------->CCA1(2)<---------At5g28300<-----------GT1  <---------AHL20(2)   --   caaagtggaggggaagaggttgaagagagacggcgcctcacagttacagctccgttgttgttttttccttccactgttaattcatttattaaaataaaat  13788400              --------->ANAC46              <---------TGA1a              --------->bZIP60(2)              =================================MYC_MYB              --------->TGA1a              --------->ANAC58              <---------O2              --------->O2            ------->GAMYB         --------->WOX13(1)        <---------WRKY12      <-----------HVH21     --------->ANAC46    <-------MYC2    ------->MYC2    ------->MYC3    <-------MYC3   --------->ANAC58   --------->ANAC46   --------->ANAC58  ------->TEIL--------->ANAC58                      <---------At4g35610 <---------ALFIN1        ----------->HVH21          --------->ZAT2 ------->ANAC58<-------PIF5            <-------GAMYB<---------ZAT2                                <-- >AHL20(2)  <---------ALFIN1          --------->MYB55(2)          <-----------GT1     <-----------GT1 -AHL20(2) --------->MYB46(3)         <---------MYB46(3)  <---------TOE1(2)         <----------DOF2 ------->ANAC46------->PIF5    ----------->HVH21    --------->At4g35610 <----------DOF2 <---------YAB1 ------->ANAC58<-----------HVH21     --------->ALFIN1     <---------TOE2(2) <----------DOF2       ---   cacgcacgcgtcaaccacgtcccatggatgacgctcacggtggttaacaaactcagctcatatgtttttttcttctttcttttcttctttacgatttcaa  13788500                                                                                          <---------YAB1               <---------AHL20(2)                            <-------MYC3              <---------YAB1              --------->AHL20(1)                             ------->MYC3          <---------MYB52(1)              <---------AHL20(2)                 --------->ARR11(3)               <-------GAMYB              --------->AHL20(2)             ----------->HVH21                   <-----------RAV1(1) -------AHL20(2)                        ------->TEIL<----------DOF2          <----------DOF2       <- ------>AHL20(2)                 <---------YAB1  <---------ARR11(3)          <---------DAG2 <--------   ttttttagtaatgaaatttaatagataatttgagtatgaatgaacatttgacatctttatccatgtgtaaatgtttgcactttctgttgattattttttt  13788600                                                                                           ------>ZmHOX2a(1)                    <---------At4g35610                                               <------MYB46(1)         --------->ANAC46                                                             <------MYB83      <---------AHL20(2)                                                             --------->MYB59  <---------------AGL15                                                       <---------AHL20(2)  --------------->AGL15       <---------YAB1                                 <---------AHL20(2) ----------GT1      --------->At4g35610    <----------DOF2                   --------->AHL20(2)   --- -AHL20(2)      --------->MYB52(1)<-------TEIL  ---------->ID1----------->HVH21  <---------AHL20(2)   ttttctattttaagtcactaccagctaatgtgatgatacatttttcttttgtcttcttcactatgtgacaactacaaaattaaatatttggtccttcctt  13788700                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                               <-----                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                 -------->P                 ---------                                                      <---------AHL20(2)                    ---------                                                      <---------AHL20(1)           ------>ZmHOX2a(1)               ------>ZmHOX2a(1)                      --------->AHL20(2)          --------->TOE1(3) -        <-----------GT1       ----------->RAV1(2)     --------->AHL20(1)          --------->TOE2(3) -  <---------TOE2(3)  ------->TEIL                    --------->AHL20(2)       <----------DOF2<------- ------>HSFB2a(2) <---------YAB1 --------->MYB52(1)  <---------AHL20(2) <----------DOF2     ---------   ctctaacgattttcttccttatgaatatcaaaacctgactgaaataagtgccaaattaaattttagcaacccttctttctctttccttaagaacaagtaa  13788800       ----------->GT1     <---------ANAC46     <---------ANAC58     <---------ANAC58  <----------DOF2 ---->GAMYB ----->MYB46(3) ---------MYB.PH3(2) ------GT1                                                                               --------->ZAT14 >ANAC46                                                                               --------->ANAC46 -ANAC55(2)                                                                            --------->bZIP60(2) >ANAC58                                                                          <---------ARR14(2) >ANAC55(2)                                                                       --------->ARR14(2) >ANAC55(1)                                           <---------ARR11(3)          <---------ARR11(3) ----->MYB83                   <-----------GT1        --------->ARR11(3)          --------->ARR11(3) ----->MYB46(1)        ------->GAMYB                --------->ANAC46             --------->GLK1(1) --MYB52(2)          --------->At4g35610            --------->ANAC58            <---------KAN4(2)---- >ANAC58             <---------At4g35610            --------->ANAC58            ---------->TaMYB80   ccaactttcttgtaaaaaacttcaactgcaattctacaatttaagccttgagacacgatattgtatgagtttgcaactttcgaatatccacttcaccaag  13788900  Previous    Next  AGI:  At4g27610.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27620.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62123.1) Range:  from: 13785438    to: 13788356    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g27620.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27610.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27610.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27610.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62123.1) Range:  from: 13788867    to: 13790924    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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